Clone Sequence Records
BO09032.3prime Sequence
902 bp (829 high quality bases) assembled on 2006-01-10
> BO09032.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCAGCGGAAATGGAGGCACCCAGCCGC
CAAAAGTGCGCTCCAGTTCCTCGGCAACCGCCAGGCAAAGGCGATCGTTG
TTCGGATTGGCCACCACTTGGATGCCCAGCGGCATGCCCTTGGAGTCCAG
ACCCATGGGCACCTGGGTGGCCGGCAAGTGGAGCACATTGAAGAGGCTGA
AGTACGCGAAGTCATTGAACTTGACCAGAGGATAGTAGTGGAATGGTGCA
GTCCTGGGAGAACTGTGAAAGAACAGCACACCATCGTCGCCGAGCAAGTC
CTGGACGGACTTCTTGCACTTGGCCGTGGCTTCCCTCATCAGCTTCTCCT
TTTCCTTGGGCAGCACACTGTCGATCAGACCATAAATGGCCGCCATGCTG
TAGTCACTTTGCCCCAGTATCTTCTTGAAGAGCTCCACAAATGGATTGAG
CTCGGCGCCATTGCCCAACAGCAGATTGAAGTTGGCCGGTTCCTGGGTCA
TCCAATAGCGCCACATCTTTCCGGTCAGCTTGGTATAGGGCAAGTCAGCG
TGCCGCACGTCCTTTCCACTCACTGCCTCGAAATGTTTGCGAATCTTGTA
CATAACCCGTTCGGTTTCCCGGTTAATAGGATTGCACTGAGCCATGCCAT
TGGAGGACACATAGAAGTAACGCAGCCGCTTCAGATCCACCTTCTGATCC
AGTTTTAGCTTGGCTTTCAACGATGGCTCCACCAGAACCTGCATCATGGG
CAGTAGATCCCGCGCAGAACGACTCATTGGACCGGCACATACCATCGTAT
CCTTTTCCTTGCCCGTTCTGAACGTACATCCGGNCATATTGACCGCACCG
GAAGTGGGTTTGTGCCCGAAGATGCCGCCATTGAAGGCCGGTATGCGTAT
GG
BO09032.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-PA | 1572 | CG5112-RA | 686..1569 | 902..19 | 4376 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1803 | CG5112-RA | 784..1667 | 902..19 | 4394 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25492243..25493126 | 902..19 | 4394 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:41:59 has no hits.
BO09032.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:52 Download gff for
BO09032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 686..1572 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:32 Download gff for
BO09032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 686..1572 | 18..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:39 Download gff for
BO09032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 784..1667 | 19..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:35 Download gff for
BO09032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 784..1667 | 19..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:35 Download gff for
BO09032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25492243..25493126 | 19..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:39 Download gff for
BO09032.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21317965..21318848 | 19..902 | 99 | | Minus |
BO09032.5prime Sequence
819 bp (815 high quality bases) assembled on 2006-01-10
> BO09032.5prime
GAAGTTATCAGTCGACATGTCATTTTGGAGCCACGTACTTGATGCCCTGC
TGGCACTGGTCCACATCCTGAGCGATCGCCTGCTGGAGTTCGTACTGGAC
TGGTATTTGGGCGAGCACAAGCGGGTATCGGGTCCACCGAGCCTGGAACA
GCAGACGACGATTACGAAGAGCGCTGTGGAGTTGGCGCAACAGATACGGG
AACGCAGGCAGCGCAGTTACGACATAGTCAAGGCCTACTGTGAGCGAATC
GAGAGCGTTAATCGGGATCTCAATGCGGTGGTCGATGGCCCGTTTCCGGA
GGCCTTGGACCAGGCACGCGAAATCGATCGCAAGTTGGACGAAAAGGAGT
ACAGCGATGAGGATCTGCGGCGCCTGCCCTTCCTAGGCGTACCCTTCTCC
ACCAAGGATAGCACCGCTGTGGCTGGGAGGCTACACACACTGGGCCTGCT
AGCAAGGAAATCGGAACGTTCGACCACGGATGCGGAATGCGTGCGCCTGA
TGAAGGAAAGTGGCGCCATTATCATCGCCACCAGCAATGTGCCGGAGGTG
AACAAGTGGATTGAGTCGAGGAACATGCTAATCGGCTGCACCAACAATCC
CTACGATCTGCGGCGTTCCGTCGGCGGTTCTTCGGGTGGTGAAGCCGCTC
TGATCGCTGCCTGCTGCACGGGTTTTGGTTTGGGAACAGACATTGGTGGT
TCCATACGCATACCGGCCTTCAATTGCGGCATCTTCGGGCACAAACCCAC
TTCCGGTGCGGTCAATATGGCCGGATGTACGTTCAGAACGGGCAAGGAAA
AGGATACGATGGTATGTGC
BO09032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-PA | 1572 | CG5112-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1803 | CG5112-RA | 98..901 | 16..819 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25491557..25492360 | 16..819 | 4020 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 18:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker | 7256 | Stalker STALKER 7256bp | 460..522 | 606..668 | 108 | 63.5 | Plus |
BO09032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:53 Download gff for
BO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:33 Download gff for
BO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:56 Download gff for
BO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 93..901 | 11..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:37 Download gff for
BO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 93..901 | 11..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:37 Download gff for
BO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25491552..25492360 | 11..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:56 Download gff for
BO09032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21317274..21318082 | 11..819 | 99 | | Plus |
BO09032.complete Sequence
1603 bp (1603 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631358
> BO09032.complete
GAAGTTATCAGTCGACATGTCATTTTGGAGCCACGTACTTGATGCCCTGC
TGGCACTGGTCCACATCCTGAGCGATCGCCTGCTGGAGTTCGTACTGGAC
TGGTATTTGGGCGAGCACAAGCGGGTATCGGGTCCACCGAGCCTGGAACA
GCAGACGACGATTACGAAGAGCGCTGTGGAGTTGGCGCAACAGATACGGG
AACGCAGGCAGCGCAGTTACGACATAGTCAAGGCCTACTGTGAGCGAATC
GAGAGCGTTAATCGGGATCTCAATGCGGTGGTCGATGGCCCGTTTCCGGA
GGCCTTGGACCAGGCACGCGAAATCGATCGCAAGTTGGACGAAAAGGAGT
ACAGCGATGAGGATCTGCGGCGCCTGCCCTTCCTAGGCGTACCCTTCTCC
ACCAAGGATAGCACCGCTGTGGCTGGGAGGCTACACACACTGGGCCTGCT
AGCAAGGAAATCGGAACGTTCGACCACGGATGCGGAATGCGTGCGCCTGA
TGAAGGAAAGTGGCGCCATTATCATCGCCACCAGCAATGTGCCGGAGGTG
AACAAGTGGATTGAGTCGAGGAACATGCTAATCGGCTGCACCAACAATCC
CTACGATCTGCGGCGTTCCGTCGGCGGTTCTTCGGGTGGTGAAGCCGCTC
TGATCGCTGCCTGCTGCACGGGTTTTGGTTTGGGAACAGACATTGGTGGT
TCCATACGCATACCGGCCTTCAATTGCGGCATCTTCGGGCACAAACCCAC
TTCCGGTGCGGTCAATATGGCCGGATGTACGTTCAGAACGGGCAAGGAAA
AGGATACGATGGTATGTGCCGGTCCAATGAGTCGTTCTGCGCGGGATCTA
CTGCCCATGATGCAGGTTCTGGTGGAGCCATCGTTGAAAGCCAAGCTAAA
ACTGGATCAGAAGGTGGATCTGAAGCGGCTGCGTTACTTCTATGTGTCCT
CCAATGGCATGGCTCAGTGCAATCCTATTAACCGGGAAACCGAACGGGTT
ATGTACAAGATTCGCAAACATTTCGAGGCAGTGAGTGGAAAGGACGTGCG
GCACGCTGACTTGCCCTATACCAAGCTGACCGGAAAGATGTGGCGCTATT
GGATGACCCAGGAACCGGCCAACTTCAATCTGCTGTTGGGCAATGGCGCC
GAGCTCAATCCATTTGTGGAGCTCTTCAAGAAGATACTGGGGCAAAGTGA
CTACAGCATGGCGGCCATTTATGGTCTGATCGACAGTGTGCTGCCCAAGG
AAAAGGAGAAGCTGATGAGGGAAGCCACGGCCAAGTGCAAGAAGTCCGTC
CAGGACTTGCTCGGCGACGATGGTGTGCTGTTCTTTCACAGTTCTCCCAG
GACTGCACCATTCCACTACTATCCTCTGGTCAAGTTCAATGACTTCGCGT
ACTTCAGCCTCTTCAATGTGCTCCACTTGCCGGCCACCCAGGTGCCCATG
GGTCTGGACTCCAAGGGCATGCCGCTGGGCATCCAAGTGGTGGCCAATCC
GAACAACGATCGCCTTTGCCTGGCGGTTGCCGAGGAACTGGAGCGCACTT
TTGGCGGCTGGGTGCCTCCATTTCCGCTGAAGAACGCAAGCTTTCTAGAC
CAT
BO09032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1572 | CG5112-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-RA | 1803 | CG5112-RA | 98..1667 | 16..1585 | 7850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25491557..25493126 | 16..1585 | 7850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:08:32 has no hits.
BO09032.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:53 Download gff for
BO09032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 1..1572 | 17..1586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:50 Download gff for
BO09032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 63..1637 | 11..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:45 Download gff for
BO09032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 99..1667 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:53 Download gff for
BO09032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 63..1637 | 11..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:19 Download gff for
BO09032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5112-RA | 99..1667 | 17..1587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:19 Download gff for
BO09032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25491558..25493126 | 17..1587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:45 Download gff for
BO09032.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21317280..21318848 | 17..1587 | 99 | | Plus |
BO09032.pep Sequence
Translation from 16 to 1603
> BO09032.pep
MSFWSHVLDALLALVHILSDRLLEFVLDWYLGEHKRVSGPPSLEQQTTIT
KSAVELAQQIRERRQRSYDIVKAYCERIESVNRDLNAVVDGPFPEALDQA
REIDRKLDEKEYSDEDLRRLPFLGVPFSTKDSTAVAGRLHTLGLLARKSE
RSTTDAECVRLMKESGAIIIATSNVPEVNKWIESRNMLIGCTNNPYDLRR
SVGGSSGGEAALIAACCTGFGLGTDIGGSIRIPAFNCGIFGHKPTSGAVN
MAGCTFRTGKEKDTMVCAGPMSRSARDLLPMMQVLVEPSLKAKLKLDQKV
DLKRLRYFYVSSNGMAQCNPINRETERVMYKIRKHFEAVSGKDVRHADLP
YTKLTGKMWRYWMTQEPANFNLLLGNGAELNPFVELFKKILGQSDYSMAA
IYGLIDSVLPKEKEKLMREATAKCKKSVQDLLGDDGVLFFHSSPRTAPFH
YYPLVKFNDFAYFSLFNVLHLPATQVPMGLDSKGMPLGIQVVANPNNDRL
CLAVAEELERTFGGWVPPFPLKNASFLDH
BO09032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5112-PA | 523 | CG5112-PA | 1..523 | 1..523 | 2733 | 100 | Plus |
| CG8839-PE | 529 | CG8839-PE | 23..525 | 23..518 | 873 | 40.2 | Plus |
| CG8839-PA | 529 | CG8839-PA | 23..525 | 23..518 | 873 | 40.2 | Plus |
| CG8839-PC | 529 | CG8839-PC | 23..525 | 23..518 | 873 | 40.2 | Plus |
| CG8839-PD | 529 | CG8839-PD | 23..525 | 23..518 | 873 | 40.2 | Plus |
