Clone Sequence Records
BO09034.3prime Sequence
954 bp (864 high quality bases) assembled on 2006-01-10
> BO09034.3prime
ATGGTCTAGAAAGCTTGCGGCCTCGATGGTTACGGTGGAGGCCGTATTGG
AGGGACTATCGAAGTGGCCAGCTACCACCTCCTCCAGCGATAAATCGAAC
TTGAAGATGGGACGGAGATCGTTGTTGAGTCGGCAGACGACTCCGGCGGA
GGCGATGTTCCAGTTCCAGCAGATCATGGCGCAGTTCAGTGCCTCCAAAT
CGCCCTTCATCGAGACAATATTCATAGCCACTGTATAGTCAATGGAGTTG
ATCTCCTCGCCCTTGATAACCACCAACTGGGTCTCGCCATTCTGGTTGTT
CAGGAAGCGCACCACCTTCTCCTTGAGATACTCAGCCGATGCATAGTCCA
GCTTTTGCTTCACATCCACCACGCTAACTTCGTGACCATTGATCTTCTCC
AGTTTGATGTCTACATGTGGACGTGCACTGCTATATAGAATGTATACCAT
GTTGGCACCGATGCCACACAGTATTCCGTACTCCAGACTCCAGAACATGC
AGGTGAGTACAGTGACCACAAAGGGAAACAGATCCTTCTTCTTAGATTTC
CACATGTCCTTAATCTTGTGCAGCTCCACTAGCGATATCATCGCCGCTAT
AATAATTGCAGCCAGCGTGCATTTGGGTATAAAGTAGAAAGTTTGGGTAA
GGAATGCCAGTGCCATGAGCACCAGGGCACCGGTGACAGCTCCACCCAGT
GGTGTCTTCACCCCACTGGCATTATTCACAGCCGTGCGGGTAAAGGATCC
CGTTACGGGCATGGAGAGCACAAAGCTGCCCATGATGTTGCACATTCCCA
GTGCCACCATCTCCTGCGATGCGTCTACAATTTTTCCCTTAGAAATGCCT
TCGATATGGCTACTATTTCCAGGATCGAAATCAAGGGGATGGAACCCNAN
GATGCGCCGACAGTGCTGATCATCTCGCCAAAAGGAACGTACTCTCCATC
TACG
BO09034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-PA | 1788 | CG5002-RA | 959..1785 | 845..19 | 4135 | 100 | Minus |
CG5002-PA | 1788 | CG5002-RA | 849..960 | 954..843 | 472 | 96.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1998 | CG5002-RA | 991..1927 | 954..19 | 4608 | 99.5 | Minus |
CG7912-RA | 1992 | CG7912-RA | 1118..1324 | 851..646 | 260 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17752134..17752436 | 842..540 | 1515 | 100 | Minus |
2R | 25286936 | 2R | 17752939..17753143 | 223..19 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 17752705..17752877 | 395..223 | 865 | 100 | Minus |
2R | 25286936 | 2R | 17752499..17752644 | 539..394 | 730 | 100 | Minus |
2R | 25286936 | 2R | 17751962..17752073 | 954..843 | 508 | 96.4 | Minus |
3R | 32079331 | 3R | 30006891..30007085 | 646..840 | 255 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:13:37 has no hits.
BO09034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:57 Download gff for
BO09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 849..1788 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:37 Download gff for
BO09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 849..1788 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:13:00 Download gff for
BO09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 991..1932 | 14..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:34:16 Download gff for
BO09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 991..1932 | 14..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:34:16 Download gff for
BO09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17751962..17752074 | 843..954 | 95 | -> | Minus |
2R | 17752134..17752436 | 540..842 | 100 | -> | Minus |
2R | 17752499..17752644 | 394..539 | 100 | -> | Minus |
2R | 17752707..17752877 | 223..393 | 100 | -> | Minus |
2R | 17752940..17753148 | 14..222 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:13:00 Download gff for
BO09034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13639467..13639579 | 843..954 | 95 | -> | Minus |
arm_2R | 13639639..13639941 | 540..842 | 100 | -> | Minus |
arm_2R | 13640004..13640149 | 394..539 | 100 | -> | Minus |
arm_2R | 13640212..13640382 | 223..393 | 100 | -> | Minus |
arm_2R | 13640445..13640653 | 14..222 | 99 | | Minus |
BO09034.5prime Sequence
920 bp (897 high quality bases) assembled on 2006-01-10
> BO09034.5prime
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGACCAGTCCTTCGAATGATTTACTGCCCGCCTGGAAGAATTTCTTCAC
CCACTTGACGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTC
TGGTGTTCCTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAAT
CGTATATTCTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGAT
CTTTGGCACCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCT
TCCGTGTCACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCG
CCCTTTAGCACCACCGTAGATGGAGAGTACGTTTCCTTTGGCGAGATGAT
CAGCACTGTCCGCGCATCCT
BO09034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-PA | 1788 | CG5002-RA | 1..904 | 17..920 | 4495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1998 | CG5002-RA | 143..1046 | 17..920 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17750771..17751071 | 32..332 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 17751770..17752017 | 673..920 | 1225 | 99.6 | Plus |
2R | 25286936 | 2R | 17751130..17751357 | 332..559 | 1140 | 100 | Plus |
2R | 25286936 | 2R | 17751430..17751545 | 558..673 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:16:53 has no hits.
BO09034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:58 Download gff for
BO09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:38 Download gff for
BO09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:22 Download gff for
BO09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 139..1046 | 13..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:21 Download gff for
BO09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 139..1046 | 13..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:21 Download gff for
BO09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17750772..17751071 | 33..332 | 100 | -> | Plus |
2R | 17751131..17751355 | 333..557 | 100 | -> | Plus |
2R | 17751430..17751545 | 558..673 | 100 | -> | Plus |
2R | 17751771..17752017 | 674..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:22 Download gff for
BO09034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13638277..13638576 | 33..332 | 100 | -> | Plus |
arm_2R | 13638636..13638860 | 333..557 | 100 | -> | Plus |
arm_2R | 13638935..13639050 | 558..673 | 100 | -> | Plus |
arm_2R | 13639276..13639522 | 674..920 | 99 | | Plus |
BO09034.complete Sequence
1819 bp (1819 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631359
> BO09034.complete
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGACCAGTCCTTCGAATGATTTACTGCCCGCCTGGAAGAATTTCTTCAC
CCACTTGACGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTC
TGGTGTTCCTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAAT
CGTATATTCTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGAT
CTTTGGCACCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCT
TCCGTGTCACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCG
CCCTTTAGCACCACCGTAGATGGAGAGTACGTTTCCTTTGGCGAGATGAT
CAGCACTGTCGGCGCATCCTTGGGTTCCATCCCCTTGATTTCGATCCTGG
AAATAGTAGCCATATCGAAGGCATTTTCTAAGGGAAAAATTGTAGACGCA
TCGCAGGAGATGGTGGCACTGGGAATGTGCAACATCATGGGCAGCTTTGT
GCTCTCCATGCCCGTAACGGGATCCTTTACCCGCACGGCTGTGAATAATG
CCAGTGGGGTGAAGACACCACTGGGTGGAGCTGTCACCGGTGCCCTGGTG
CTCATGGCACTGGCATTCCTTACCCAAACTTTCTACTTTATACCCAAATG
CACGCTGGCTGCAATTATTATAGCGGCGATGATATCGCTAGTGGAGCTGC
ACAAGATTAAGGACATGTGGAAATCTAAGAAGAAGGATCTGTTTCCCTTT
GTGGTCACTGTACTCACCTGCATGTTCTGGAGTCTGGAGTACGGAATACT
GTGTGGCATCGGTGCCAACATGGTATACATTCTATATAGCAGTGCACGTC
CACATGTAGACATCAAACTGGAGAAGATCAATGGTCACGAAGTTAGCGTG
GTGGATGTGAAGCAAAAGCTGGACTATGCATCGGCTGAGTATCTCAAGGA
GAAGGTGGTGCGCTTCCTGAACAACCAGAATGGCGAGACCCAGTTGGTGG
TTATCAAGGGCGAGGAGATCAACTCCATTGACTATACAGTGGCTATGAAT
ATTGTCTCGATGAAGGGCGATTTGGAGGCACTGAACTGCGCCATGATCTG
CTGGAACTGGAACATCGCCTCCGCCGGAGTCGTCTGCCGACTCAACAACG
ATCTCCGTCCCATCTTCAAGTTCGATTTATCGCTGGAGGAGGTGGTAGCT
GGCCACTTCGATAGTCCCTCCAATACGGCCTCCACCGTAACCATCGAGGC
CGCAAGCTTTCTAGACCAT
BO09034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1788 | CG5002-PA | 1..1785 | 17..1801 | 8925 | 100 | Plus |
CG7912-RA | 1809 | CG7912-PA | 958..1164 | 968..1174 | 270 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-RA | 1998 | CG5002-RA | 143..1927 | 17..1801 | 8925 | 100 | Plus |
CG7912-RA | 1992 | CG7912-RA | 1118..1324 | 968..1174 | 270 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17751770..17752079 | 673..982 | 1535 | 99.7 | Plus |
2R | 25286936 | 2R | 17752134..17752436 | 978..1280 | 1515 | 100 | Plus |
2R | 25286936 | 2R | 17750771..17751071 | 32..332 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 17751130..17751357 | 332..559 | 1140 | 100 | Plus |
2R | 25286936 | 2R | 17752939..17753143 | 1597..1801 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 17752705..17752877 | 1425..1597 | 865 | 100 | Plus |
2R | 25286936 | 2R | 17752499..17752644 | 1281..1426 | 730 | 100 | Plus |
2R | 25286936 | 2R | 17751430..17751545 | 558..673 | 580 | 100 | Plus |
3R | 32079331 | 3R | 30006891..30007085 | 1174..980 | 255 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:41:50 has no hits.
BO09034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:50 Download gff for
BO09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 1..1788 | 17..1804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:00 Download gff for
BO09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 134..1927 | 13..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:56 Download gff for
BO09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 143..1927 | 17..1803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:51 Download gff for
BO09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 134..1927 | 13..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:37 Download gff for
BO09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5002-RA | 143..1927 | 17..1803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:37 Download gff for
BO09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17751771..17752074 | 674..977 | 100 | -> | Plus |
2R | 17752940..17753143 | 1598..1803 | 99 | | Plus |
2R | 17751430..17751545 | 558..673 | 100 | -> | Plus |
2R | 17752134..17752436 | 978..1280 | 100 | -> | Plus |
2R | 17752499..17752644 | 1281..1426 | 100 | -> | Plus |
2R | 17752707..17752877 | 1427..1597 | 100 | -> | Plus |
2R | 17750435..17750450 | 17..32 | 100 | -> | Plus |
2R | 17750772..17751071 | 33..332 | 100 | -> | Plus |
2R | 17751131..17751355 | 333..557 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:56 Download gff for
BO09034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13637940..13637955 | 17..32 | 100 | -> | Plus |
arm_2R | 13638277..13638576 | 33..332 | 100 | -> | Plus |
arm_2R | 13638636..13638860 | 333..557 | 100 | -> | Plus |
arm_2R | 13638935..13639050 | 558..673 | 100 | -> | Plus |
arm_2R | 13639276..13639579 | 674..977 | 100 | -> | Plus |
arm_2R | 13639639..13639941 | 978..1280 | 100 | -> | Plus |
arm_2R | 13640004..13640149 | 1281..1426 | 100 | -> | Plus |
arm_2R | 13640212..13640382 | 1427..1597 | 100 | -> | Plus |
arm_2R | 13640445..13640648 | 1598..1803 | 99 | | Plus |
BO09034.pep Sequence
Translation from 16 to 1819
> BO09034.pep
MRADEDNLYREQLPNVSTLIRDGGRKLCRPSTVTNKFPILKWLPRYRLEY
IMQDFIAGFTVGLTTIPQAIAYGVVAGLEPQYGLYSAFMGCFTYIVFGSC
KDVTIATTAIMALMVNQYATISPDYAVLVCFLAGCIVLLLGLLNMGVLVR
FISIPVITGFTMAAATTIGSAQINNIVGLTSPSNDLLPAWKNFFTHLTSI
RLWDALLGVSSLVFLLLMTRVKDIKWGNRIFWKYLGLSRNALAVIFGTFL
AYILSRDGNQPFRVTGNITAGVPPFRLPPFSTTVDGEYVSFGEMISTVGA
SLGSIPLISILEIVAISKAFSKGKIVDASQEMVALGMCNIMGSFVLSMPV
TGSFTRTAVNNASGVKTPLGGAVTGALVLMALAFLTQTFYFIPKCTLAAI
IIAAMISLVELHKIKDMWKSKKKDLFPFVVTVLTCMFWSLEYGILCGIGA
NMVYILYSSARPHVDIKLEKINGHEVSVVDVKQKLDYASAEYLKEKVVRF
LNNQNGETQLVVIKGEEINSIDYTVAMNIVSMKGDLEALNCAMICWNWNI
ASAGVVCRLNNDLRPIFKFDLSLEEVVAGHFDSPSNTASTVTIEAASFLD
H
BO09034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5002-PA | 595 | CG5002-PA | 1..595 | 1..595 | 3043 | 100 | Plus |
CG7912-PA | 602 | CG7912-PA | 1..583 | 1..577 | 1747 | 57.1 | Plus |
Esp-PB | 654 | CG7005-PB | 56..611 | 14..547 | 1039 | 41.1 | Plus |
Esp-PA | 654 | CG7005-PA | 56..611 | 14..547 | 1039 | 41.1 | Plus |
CG9702-PB | 676 | CG9702-PB | 66..667 | 25..593 | 935 | 36.5 | Plus |