Clone BO09034 Report

Search the DGRC for BO09034

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG5002-RA
Protein status:BO09034.pep: validated full length
Sequenced Size:1819

Clone Sequence Records

BO09034.3prime Sequence

954 bp (864 high quality bases) assembled on 2006-01-10

> BO09034.3prime
ATGGTCTAGAAAGCTTGCGGCCTCGATGGTTACGGTGGAGGCCGTATTGG
AGGGACTATCGAAGTGGCCAGCTACCACCTCCTCCAGCGATAAATCGAAC
TTGAAGATGGGACGGAGATCGTTGTTGAGTCGGCAGACGACTCCGGCGGA
GGCGATGTTCCAGTTCCAGCAGATCATGGCGCAGTTCAGTGCCTCCAAAT
CGCCCTTCATCGAGACAATATTCATAGCCACTGTATAGTCAATGGAGTTG
ATCTCCTCGCCCTTGATAACCACCAACTGGGTCTCGCCATTCTGGTTGTT
CAGGAAGCGCACCACCTTCTCCTTGAGATACTCAGCCGATGCATAGTCCA
GCTTTTGCTTCACATCCACCACGCTAACTTCGTGACCATTGATCTTCTCC
AGTTTGATGTCTACATGTGGACGTGCACTGCTATATAGAATGTATACCAT
GTTGGCACCGATGCCACACAGTATTCCGTACTCCAGACTCCAGAACATGC
AGGTGAGTACAGTGACCACAAAGGGAAACAGATCCTTCTTCTTAGATTTC
CACATGTCCTTAATCTTGTGCAGCTCCACTAGCGATATCATCGCCGCTAT
AATAATTGCAGCCAGCGTGCATTTGGGTATAAAGTAGAAAGTTTGGGTAA
GGAATGCCAGTGCCATGAGCACCAGGGCACCGGTGACAGCTCCACCCAGT
GGTGTCTTCACCCCACTGGCATTATTCACAGCCGTGCGGGTAAAGGATCC
CGTTACGGGCATGGAGAGCACAAAGCTGCCCATGATGTTGCACATTCCCA
GTGCCACCATCTCCTGCGATGCGTCTACAATTTTTCCCTTAGAAATGCCT
TCGATATGGCTACTATTTCCAGGATCGAAATCAAGGGGATGGAACCCNAN
GATGCGCCGACAGTGCTGATCATCTCGCCAAAAGGAACGTACTCTCCATC
TACG

BO09034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-PA 1788 CG5002-RA 959..1785 845..19 4135 100 Minus
CG5002-PA 1788 CG5002-RA 849..960 954..843 472 96.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1998 CG5002-RA 991..1927 954..19 4608 99.5 Minus
CG7912-RA 1992 CG7912-RA 1118..1324 851..646 260 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17752134..17752436 842..540 1515 100 Minus
2R 25286936 2R 17752939..17753143 223..19 1025 100 Minus
2R 25286936 2R 17752705..17752877 395..223 865 100 Minus
2R 25286936 2R 17752499..17752644 539..394 730 100 Minus
2R 25286936 2R 17751962..17752073 954..843 508 96.4 Minus
3R 32079331 3R 30006891..30007085 646..840 255 75.4 Plus
Blast to na_te.dros performed on 2015-01-31 15:13:37 has no hits.

BO09034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:57 Download gff for BO09034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 849..1788 16..954 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:37 Download gff for BO09034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 849..1788 16..954 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:13:00 Download gff for BO09034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 991..1932 14..954 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:34:16 Download gff for BO09034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 991..1932 14..954 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:34:16 Download gff for BO09034.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17751962..17752074 843..954 95 -> Minus
2R 17752134..17752436 540..842 100 -> Minus
2R 17752499..17752644 394..539 100 -> Minus
2R 17752707..17752877 223..393 100 -> Minus
2R 17752940..17753148 14..222 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:13:00 Download gff for BO09034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13639467..13639579 843..954 95 -> Minus
arm_2R 13639639..13639941 540..842 100 -> Minus
arm_2R 13640004..13640149 394..539 100 -> Minus
arm_2R 13640212..13640382 223..393 100 -> Minus
arm_2R 13640445..13640653 14..222 99   Minus

BO09034.5prime Sequence

920 bp (897 high quality bases) assembled on 2006-01-10

> BO09034.5prime
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGACCAGTCCTTCGAATGATTTACTGCCCGCCTGGAAGAATTTCTTCAC
CCACTTGACGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTC
TGGTGTTCCTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAAT
CGTATATTCTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGAT
CTTTGGCACCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCT
TCCGTGTCACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCG
CCCTTTAGCACCACCGTAGATGGAGAGTACGTTTCCTTTGGCGAGATGAT
CAGCACTGTCCGCGCATCCT

BO09034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-PA 1788 CG5002-RA 1..904 17..920 4495 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1998 CG5002-RA 143..1046 17..920 4505 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17750771..17751071 32..332 1505 100 Plus
2R 25286936 2R 17751770..17752017 673..920 1225 99.6 Plus
2R 25286936 2R 17751130..17751357 332..559 1140 100 Plus
2R 25286936 2R 17751430..17751545 558..673 580 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:16:53 has no hits.

BO09034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:58 Download gff for BO09034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:38 Download gff for BO09034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:22 Download gff for BO09034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 139..1046 13..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:21 Download gff for BO09034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 139..1046 13..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:21 Download gff for BO09034.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17750772..17751071 33..332 100 -> Plus
2R 17751131..17751355 333..557 100 -> Plus
2R 17751430..17751545 558..673 100 -> Plus
2R 17751771..17752017 674..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:22 Download gff for BO09034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13638277..13638576 33..332 100 -> Plus
arm_2R 13638636..13638860 333..557 100 -> Plus
arm_2R 13638935..13639050 558..673 100 -> Plus
arm_2R 13639276..13639522 674..920 99   Plus

BO09034.complete Sequence

1819 bp (1819 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631359

> BO09034.complete
GAAGTTATCAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGC
AACTGCCCAATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGC
CGTCCGTCCACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCG
TTACCGATTGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGG
GATTAACGACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTG
GAGCCGCAGTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACAT
CGTGTTTGGTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGG
CTCTAATGGTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTG
GTGTGTTTCCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACAT
GGGTGTACTGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCA
TGGCGGCGGCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGT
CTGACCAGTCCTTCGAATGATTTACTGCCCGCCTGGAAGAATTTCTTCAC
CCACTTGACGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTC
TGGTGTTCCTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAAT
CGTATATTCTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGAT
CTTTGGCACCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCT
TCCGTGTCACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCG
CCCTTTAGCACCACCGTAGATGGAGAGTACGTTTCCTTTGGCGAGATGAT
CAGCACTGTCGGCGCATCCTTGGGTTCCATCCCCTTGATTTCGATCCTGG
AAATAGTAGCCATATCGAAGGCATTTTCTAAGGGAAAAATTGTAGACGCA
TCGCAGGAGATGGTGGCACTGGGAATGTGCAACATCATGGGCAGCTTTGT
GCTCTCCATGCCCGTAACGGGATCCTTTACCCGCACGGCTGTGAATAATG
CCAGTGGGGTGAAGACACCACTGGGTGGAGCTGTCACCGGTGCCCTGGTG
CTCATGGCACTGGCATTCCTTACCCAAACTTTCTACTTTATACCCAAATG
CACGCTGGCTGCAATTATTATAGCGGCGATGATATCGCTAGTGGAGCTGC
ACAAGATTAAGGACATGTGGAAATCTAAGAAGAAGGATCTGTTTCCCTTT
GTGGTCACTGTACTCACCTGCATGTTCTGGAGTCTGGAGTACGGAATACT
GTGTGGCATCGGTGCCAACATGGTATACATTCTATATAGCAGTGCACGTC
CACATGTAGACATCAAACTGGAGAAGATCAATGGTCACGAAGTTAGCGTG
GTGGATGTGAAGCAAAAGCTGGACTATGCATCGGCTGAGTATCTCAAGGA
GAAGGTGGTGCGCTTCCTGAACAACCAGAATGGCGAGACCCAGTTGGTGG
TTATCAAGGGCGAGGAGATCAACTCCATTGACTATACAGTGGCTATGAAT
ATTGTCTCGATGAAGGGCGATTTGGAGGCACTGAACTGCGCCATGATCTG
CTGGAACTGGAACATCGCCTCCGCCGGAGTCGTCTGCCGACTCAACAACG
ATCTCCGTCCCATCTTCAAGTTCGATTTATCGCTGGAGGAGGTGGTAGCT
GGCCACTTCGATAGTCCCTCCAATACGGCCTCCACCGTAACCATCGAGGC
CGCAAGCTTTCTAGACCAT

BO09034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1788 CG5002-PA 1..1785 17..1801 8925 100 Plus
CG7912-RA 1809 CG7912-PA 958..1164 968..1174 270 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-RA 1998 CG5002-RA 143..1927 17..1801 8925 100 Plus
CG7912-RA 1992 CG7912-RA 1118..1324 968..1174 270 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17751770..17752079 673..982 1535 99.7 Plus
2R 25286936 2R 17752134..17752436 978..1280 1515 100 Plus
2R 25286936 2R 17750771..17751071 32..332 1505 100 Plus
2R 25286936 2R 17751130..17751357 332..559 1140 100 Plus
2R 25286936 2R 17752939..17753143 1597..1801 1025 100 Plus
2R 25286936 2R 17752705..17752877 1425..1597 865 100 Plus
2R 25286936 2R 17752499..17752644 1281..1426 730 100 Plus
2R 25286936 2R 17751430..17751545 558..673 580 100 Plus
3R 32079331 3R 30006891..30007085 1174..980 255 75.4 Minus
Blast to na_te.dros performed on 2014-11-27 16:41:50 has no hits.

BO09034.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:50 Download gff for BO09034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 1..1788 17..1804 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:00 Download gff for BO09034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 134..1927 13..1806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:56 Download gff for BO09034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 143..1927 17..1803 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:51 Download gff for BO09034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 134..1927 13..1806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:37 Download gff for BO09034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5002-RA 143..1927 17..1803 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:37 Download gff for BO09034.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17751771..17752074 674..977 100 -> Plus
2R 17752940..17753143 1598..1803 99   Plus
2R 17751430..17751545 558..673 100 -> Plus
2R 17752134..17752436 978..1280 100 -> Plus
2R 17752499..17752644 1281..1426 100 -> Plus
2R 17752707..17752877 1427..1597 100 -> Plus
2R 17750435..17750450 17..32 100 -> Plus
2R 17750772..17751071 33..332 100 -> Plus
2R 17751131..17751355 333..557 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:56 Download gff for BO09034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13637940..13637955 17..32 100 -> Plus
arm_2R 13638277..13638576 33..332 100 -> Plus
arm_2R 13638636..13638860 333..557 100 -> Plus
arm_2R 13638935..13639050 558..673 100 -> Plus
arm_2R 13639276..13639579 674..977 100 -> Plus
arm_2R 13639639..13639941 978..1280 100 -> Plus
arm_2R 13640004..13640149 1281..1426 100 -> Plus
arm_2R 13640212..13640382 1427..1597 100 -> Plus
arm_2R 13640445..13640648 1598..1803 99   Plus

BO09034.pep Sequence

Translation from 16 to 1819

> BO09034.pep
MRADEDNLYREQLPNVSTLIRDGGRKLCRPSTVTNKFPILKWLPRYRLEY
IMQDFIAGFTVGLTTIPQAIAYGVVAGLEPQYGLYSAFMGCFTYIVFGSC
KDVTIATTAIMALMVNQYATISPDYAVLVCFLAGCIVLLLGLLNMGVLVR
FISIPVITGFTMAAATTIGSAQINNIVGLTSPSNDLLPAWKNFFTHLTSI
RLWDALLGVSSLVFLLLMTRVKDIKWGNRIFWKYLGLSRNALAVIFGTFL
AYILSRDGNQPFRVTGNITAGVPPFRLPPFSTTVDGEYVSFGEMISTVGA
SLGSIPLISILEIVAISKAFSKGKIVDASQEMVALGMCNIMGSFVLSMPV
TGSFTRTAVNNASGVKTPLGGAVTGALVLMALAFLTQTFYFIPKCTLAAI
IIAAMISLVELHKIKDMWKSKKKDLFPFVVTVLTCMFWSLEYGILCGIGA
NMVYILYSSARPHVDIKLEKINGHEVSVVDVKQKLDYASAEYLKEKVVRF
LNNQNGETQLVVIKGEEINSIDYTVAMNIVSMKGDLEALNCAMICWNWNI
ASAGVVCRLNNDLRPIFKFDLSLEEVVAGHFDSPSNTASTVTIEAASFLD
H

BO09034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5002-PA 595 CG5002-PA 1..595 1..595 3043 100 Plus
CG7912-PA 602 CG7912-PA 1..583 1..577 1747 57.1 Plus
Esp-PB 654 CG7005-PB 56..611 14..547 1039 41.1 Plus
Esp-PA 654 CG7005-PA 56..611 14..547 1039 41.1 Plus
CG9702-PB 676 CG9702-PB 66..667 25..593 935 36.5 Plus