Clone BO09035 Report

Search the DGRC for BO09035

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG4645-RA
Protein status:BO09035.pep: validated full length
Sequenced Size:1114

Clone Sequence Records

BO09035.3prime Sequence

842 bp (804 high quality bases) assembled on 2006-01-10

> BO09035.3prime
ATGGTCTAGAAAGCTTGCGTGGGTCTGATTGCCGGGCACTGCGTTGACAA
CCGCCTGCGTCACGGCTTTCAGAGCAGCCGGAGCAGCAGGTGCAGCTGGT
GTCGGAGCAACTGGATCCAGCGACGGGACTGTGGGATTGTGAAAGAAATA
GAGCAGAAATCCGGCGGCCAGCACCACATGTGCACTCAGGATTCCAACGA
TGAGGAACAGCGAGAATTGCGAGTTGCGCAGCGCTGGCGTTAGCACCGCA
ATCAAAACCGTGCCCGAAAGCAAGGCGGCGGTGATCACCAGGAGCCACTG
CAGCAGAGAGATATTGATCACCCAGAGAATGGAGACTGGTATATAAATGG
CCAAACTGTATCCATAGATGCACATCAGCGACAAGAGGCTCGGCATGTAG
CTGGCGCTGTCCGTTTCCACGGCATCAGCGGAGTCCACAGGCTTCAGGCT
GTACTTGAAGAGGGCCCACAGAACGGCTGGCAAGATATTGGCATACAAGA
AGATGGACGTAGCCGCATAGGAGACCAGATGGAAGTTGTAGTGCCATTTG
TACGCATCAGTGGCTTGCTGCAAATAGCTGGCAATATTACCACTTATTGC
TATGGAAAAGATCAGGGTGACGGTTATCCAGAAGGGTCCATATAGATCCG
GATTCTCGCCGATGTTCATGCGCAGATAGTTGCCAGAGGCCCGTTTGGGT
ATCATGGAGTTGGCGATTCGCTCGAGCACCATATAGGTGTCCACGTTGAA
GAACTGCTGGTAGTACTCGATCGTAAACAGTGATAGTTTCGCACCACCGC
CTCCACCGCCGGCGGATCCGTCCAGCGATGAGTTCTGCGGCT

BO09035.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-PA 1083 CG4645-RA 257..1080 842..19 4120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1415 CG4645-RB 401..1224 842..19 4120 100 Minus
CG4645-RC 1588 CG4645-RC 401..1224 842..19 4120 100 Minus
CG4645-RA 1521 CG4645-RA 507..1330 842..19 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12911413..12911706 312..19 1470 100 Minus
X 23542271 X 12910459..12910688 842..613 1150 100 Minus
X 23542271 X 12910752..12910960 613..405 1045 100 Minus
X 23542271 X 12911024..12911116 405..313 465 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:37:03 has no hits.

BO09035.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:59 Download gff for BO09035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 257..1083 18..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:40 Download gff for BO09035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 257..1083 18..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:51 Download gff for BO09035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 507..1330 19..842 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:59 Download gff for BO09035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 507..1330 19..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:59 Download gff for BO09035.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12910459..12910688 613..842 100 -> Minus
X 12910753..12910959 406..612 100 -> Minus
X 12911024..12911116 313..405 100 -> Minus
X 12911413..12911706 19..312 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:51 Download gff for BO09035.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12804492..12804721 613..842 100 -> Minus
arm_X 12804786..12804992 406..612 100 -> Minus
arm_X 12805057..12805149 313..405 100 -> Minus
arm_X 12805446..12805739 19..312 100   Minus

BO09035.5prime Sequence

848 bp (790 high quality bases) assembled on 2006-01-10

> BO09035.5prime
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTT

BO09035.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-PA 1083 CG4645-RA 1..832 17..848 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1415 CG4645-RB 145..976 17..848 4160 100 Plus
CG4645-RC 1588 CG4645-RC 145..976 17..848 4160 100 Plus
CG4645-RA 1521 CG4645-RA 251..1082 17..848 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12910203..12910688 17..502 2430 100 Plus
X 23542271 X 12910752..12910960 502..710 1045 100 Plus
X 23542271 X 12911024..12911116 710..802 465 100 Plus
X 23542271 X 12911413..12911458 803..848 230 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:54:13 has no hits.

BO09035.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:00 Download gff for BO09035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 1..832 17..848 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:41 Download gff for BO09035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-PA 1..832 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:29 Download gff for BO09035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1082 12..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:41 Download gff for BO09035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1082 12..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:41 Download gff for BO09035.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12910198..12910688 12..502 99 -> Plus
X 12910753..12910959 503..709 100 -> Plus
X 12911024..12911116 710..802 100 -> Plus
X 12911413..12911458 803..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:29 Download gff for BO09035.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12804231..12804721 12..502 99 -> Plus
arm_X 12804786..12804992 503..709 100 -> Plus
arm_X 12805057..12805149 710..802 100 -> Plus
arm_X 12805446..12805491 803..848 100   Plus

BO09035.complete Sequence

1114 bp (1114 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631360

> BO09035.complete
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTTCG
GGCACGGTTTTGATTGCGGTGCTAACGCCAGCGCTGCGCAACTCGCAATT
CTCGCTGTTCCTCATCGTTGGAATCCTGAGTGCACATGTGGTGCTGGCCG
CCGGATTTCTGCTCTATTTCTTTCACAATCCCACAGTCCCGTCGCTGGAT
CCAGTTGCTCCGACACCAGCTGCACCTGCTGCTCCGGCTGCTCTGAAAGC
CGTGACGCAGGCGGTTGTCAACGCAGTGCCCGGCAATCAGACCCACGCAA
GCTTTCTAGACCAT

BO09035.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1083 CG4645-PB 1..1080 17..1096 5400 100 Plus
CG4645-RC 1083 CG4645-PC 1..1080 17..1096 5400 100 Plus
CG4645-RA 1083 CG4645-PA 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-RB 1415 CG4645-RB 145..1224 17..1096 5400 100 Plus
CG4645-RC 1588 CG4645-RC 145..1224 17..1096 5400 100 Plus
CG4645-RA 1521 CG4645-RA 251..1330 17..1096 5400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12910203..12910688 17..502 2430 100 Plus
X 23542271 X 12911413..12911706 803..1096 1470 100 Plus
X 23542271 X 12910752..12910960 502..710 1045 100 Plus
X 23542271 X 12911024..12911116 710..802 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:05:47 has no hits.

BO09035.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:40 Download gff for BO09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 1..1083 17..1097 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:33 Download gff for BO09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1330 12..1096 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:48 Download gff for BO09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 251..1330 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:40 Download gff for BO09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 246..1330 12..1096 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:22 Download gff for BO09035.complete
Subject Subject Range Query Range Percent Splice Strand
CG4645-RA 251..1330 17..1098 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:22 Download gff for BO09035.complete
Subject Subject Range Query Range Percent Splice Strand
X 12910203..12910688 17..502 100 -> Plus
X 12910753..12910959 503..709 100 -> Plus
X 12911024..12911116 710..802 100 -> Plus
X 12911413..12911706 803..1098 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:48 Download gff for BO09035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12804236..12804721 17..502 100 -> Plus
arm_X 12804786..12804992 503..709 100 -> Plus
arm_X 12805057..12805149 710..802 100 -> Plus
arm_X 12805446..12805739 803..1098 99   Plus

BO09035.pep Sequence

Translation from 16 to 1114

> BO09035.pep
METPMADDLLQFRDYSGGAPAQINVNSPTHGGSGGSGGGSAGSGGSVGGG
GANAQRQRGDPLADLIYDMTSSAQGFSGAASSGGSQPQNSSLDGSAGGGG
GGAKLSLFTIEYYQQFFNVDTYMVLERIANSMIPKRASGNYLRMNIGENP
DLYGPFWITVTLIFSIAISGNIASYLQQATDAYKWHYNFHLVSYAATSIF
LYANILPAVLWALFKYSLKPVDSADAVETDSASYMPSLLSLMCIYGYSLA
IYIPVSILWVINISLLQWLLVITAALLSGTVLIAVLTPALRNSQFSLFLI
VGILSAHVVLAAGFLLYFFHNPTVPSLDPVAPTPAAPAAPAALKAVTQAV
VNAVPGNQTHASFLDH

BO09035.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4645-PB 360 CG4645-PB 1..360 1..360 1845 100 Plus
CG4645-PC 360 CG4645-PC 1..360 1..360 1845 100 Plus
CG4645-PA 360 CG4645-PA 1..360 1..360 1845 100 Plus