Clone Sequence Records
BO09035.3prime Sequence
842 bp (804 high quality bases) assembled on 2006-01-10
> BO09035.3prime
ATGGTCTAGAAAGCTTGCGTGGGTCTGATTGCCGGGCACTGCGTTGACAA
CCGCCTGCGTCACGGCTTTCAGAGCAGCCGGAGCAGCAGGTGCAGCTGGT
GTCGGAGCAACTGGATCCAGCGACGGGACTGTGGGATTGTGAAAGAAATA
GAGCAGAAATCCGGCGGCCAGCACCACATGTGCACTCAGGATTCCAACGA
TGAGGAACAGCGAGAATTGCGAGTTGCGCAGCGCTGGCGTTAGCACCGCA
ATCAAAACCGTGCCCGAAAGCAAGGCGGCGGTGATCACCAGGAGCCACTG
CAGCAGAGAGATATTGATCACCCAGAGAATGGAGACTGGTATATAAATGG
CCAAACTGTATCCATAGATGCACATCAGCGACAAGAGGCTCGGCATGTAG
CTGGCGCTGTCCGTTTCCACGGCATCAGCGGAGTCCACAGGCTTCAGGCT
GTACTTGAAGAGGGCCCACAGAACGGCTGGCAAGATATTGGCATACAAGA
AGATGGACGTAGCCGCATAGGAGACCAGATGGAAGTTGTAGTGCCATTTG
TACGCATCAGTGGCTTGCTGCAAATAGCTGGCAATATTACCACTTATTGC
TATGGAAAAGATCAGGGTGACGGTTATCCAGAAGGGTCCATATAGATCCG
GATTCTCGCCGATGTTCATGCGCAGATAGTTGCCAGAGGCCCGTTTGGGT
ATCATGGAGTTGGCGATTCGCTCGAGCACCATATAGGTGTCCACGTTGAA
GAACTGCTGGTAGTACTCGATCGTAAACAGTGATAGTTTCGCACCACCGC
CTCCACCGCCGGCGGATCCGTCCAGCGATGAGTTCTGCGGCT
BO09035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-PA | 1083 | CG4645-RA | 257..1080 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1415 | CG4645-RB | 401..1224 | 842..19 | 4120 | 100 | Minus |
CG4645-RC | 1588 | CG4645-RC | 401..1224 | 842..19 | 4120 | 100 | Minus |
CG4645-RA | 1521 | CG4645-RA | 507..1330 | 842..19 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12911413..12911706 | 312..19 | 1470 | 100 | Minus |
X | 23542271 | X | 12910459..12910688 | 842..613 | 1150 | 100 | Minus |
X | 23542271 | X | 12910752..12910960 | 613..405 | 1045 | 100 | Minus |
X | 23542271 | X | 12911024..12911116 | 405..313 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:37:03 has no hits.
BO09035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:59 Download gff for
BO09035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 257..1083 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:40 Download gff for
BO09035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 257..1083 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:51 Download gff for
BO09035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 507..1330 | 19..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:59 Download gff for
BO09035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 507..1330 | 19..842 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:59 Download gff for
BO09035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12910459..12910688 | 613..842 | 100 | -> | Minus |
X | 12910753..12910959 | 406..612 | 100 | -> | Minus |
X | 12911024..12911116 | 313..405 | 100 | -> | Minus |
X | 12911413..12911706 | 19..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:51 Download gff for
BO09035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12804492..12804721 | 613..842 | 100 | -> | Minus |
arm_X | 12804786..12804992 | 406..612 | 100 | -> | Minus |
arm_X | 12805057..12805149 | 313..405 | 100 | -> | Minus |
arm_X | 12805446..12805739 | 19..312 | 100 | | Minus |
BO09035.5prime Sequence
848 bp (790 high quality bases) assembled on 2006-01-10
> BO09035.5prime
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTT
BO09035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-PA | 1083 | CG4645-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1415 | CG4645-RB | 145..976 | 17..848 | 4160 | 100 | Plus |
CG4645-RC | 1588 | CG4645-RC | 145..976 | 17..848 | 4160 | 100 | Plus |
CG4645-RA | 1521 | CG4645-RA | 251..1082 | 17..848 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12910203..12910688 | 17..502 | 2430 | 100 | Plus |
X | 23542271 | X | 12910752..12910960 | 502..710 | 1045 | 100 | Plus |
X | 23542271 | X | 12911024..12911116 | 710..802 | 465 | 100 | Plus |
X | 23542271 | X | 12911413..12911458 | 803..848 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:54:13 has no hits.
BO09035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:00 Download gff for
BO09035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:41 Download gff for
BO09035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-PA | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:29 Download gff for
BO09035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1082 | 12..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:41 Download gff for
BO09035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1082 | 12..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:41 Download gff for
BO09035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12910198..12910688 | 12..502 | 99 | -> | Plus |
X | 12910753..12910959 | 503..709 | 100 | -> | Plus |
X | 12911024..12911116 | 710..802 | 100 | -> | Plus |
X | 12911413..12911458 | 803..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:29 Download gff for
BO09035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12804231..12804721 | 12..502 | 99 | -> | Plus |
arm_X | 12804786..12804992 | 503..709 | 100 | -> | Plus |
arm_X | 12805057..12805149 | 710..802 | 100 | -> | Plus |
arm_X | 12805446..12805491 | 803..848 | 100 | | Plus |
BO09035.complete Sequence
1114 bp (1114 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631360
> BO09035.complete
GAAGTTATCAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGT
TCCGCGACTACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCT
ACGCACGGCGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGG
CTCCGTTGGCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGC
TGGCGGATCTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGA
GCTGCATCCTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATC
CGCCGGCGGTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGT
ACTACCAGCAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATC
GCCAACTCCATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAA
CATCGGCGAGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCC
TGATCTTTTCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAA
GCCACTGATGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGC
GGCTACGTCCATCTTCTTGTATGCCAATATCTTGCCAGCCGTTCTGTGGG
CCCTCTTCAAGTACAGCCTGAAGCCTGTGGACTCCGCTGATGCCGTGGAA
ACGGACAGCGCCAGCTACATGCCGAGCCTCTTGTCGCTGATGTGCATCTA
TGGATACAGTTTGGCCATTTATATACCAGTCTCCATTCTCTGGGTGATCA
ATATCTCTCTGCTGCAGTGGCTCCTGGTGATCACCGCCGCCTTGCTTTCG
GGCACGGTTTTGATTGCGGTGCTAACGCCAGCGCTGCGCAACTCGCAATT
CTCGCTGTTCCTCATCGTTGGAATCCTGAGTGCACATGTGGTGCTGGCCG
CCGGATTTCTGCTCTATTTCTTTCACAATCCCACAGTCCCGTCGCTGGAT
CCAGTTGCTCCGACACCAGCTGCACCTGCTGCTCCGGCTGCTCTGAAAGC
CGTGACGCAGGCGGTTGTCAACGCAGTGCCCGGCAATCAGACCCACGCAA
GCTTTCTAGACCAT
BO09035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1083 | CG4645-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG4645-RC | 1083 | CG4645-PC | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG4645-RA | 1083 | CG4645-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-RB | 1415 | CG4645-RB | 145..1224 | 17..1096 | 5400 | 100 | Plus |
CG4645-RC | 1588 | CG4645-RC | 145..1224 | 17..1096 | 5400 | 100 | Plus |
CG4645-RA | 1521 | CG4645-RA | 251..1330 | 17..1096 | 5400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12910203..12910688 | 17..502 | 2430 | 100 | Plus |
X | 23542271 | X | 12911413..12911706 | 803..1096 | 1470 | 100 | Plus |
X | 23542271 | X | 12910752..12910960 | 502..710 | 1045 | 100 | Plus |
X | 23542271 | X | 12911024..12911116 | 710..802 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:05:47 has no hits.
BO09035.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:40 Download gff for
BO09035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 1..1083 | 17..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:33 Download gff for
BO09035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1330 | 12..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:48 Download gff for
BO09035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 251..1330 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:40 Download gff for
BO09035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 246..1330 | 12..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:22 Download gff for
BO09035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4645-RA | 251..1330 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:22 Download gff for
BO09035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12910203..12910688 | 17..502 | 100 | -> | Plus |
X | 12910753..12910959 | 503..709 | 100 | -> | Plus |
X | 12911024..12911116 | 710..802 | 100 | -> | Plus |
X | 12911413..12911706 | 803..1098 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:48 Download gff for
BO09035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12804236..12804721 | 17..502 | 100 | -> | Plus |
arm_X | 12804786..12804992 | 503..709 | 100 | -> | Plus |
arm_X | 12805057..12805149 | 710..802 | 100 | -> | Plus |
arm_X | 12805446..12805739 | 803..1098 | 99 | | Plus |
BO09035.pep Sequence
Translation from 16 to 1114
> BO09035.pep
METPMADDLLQFRDYSGGAPAQINVNSPTHGGSGGSGGGSAGSGGSVGGG
GANAQRQRGDPLADLIYDMTSSAQGFSGAASSGGSQPQNSSLDGSAGGGG
GGAKLSLFTIEYYQQFFNVDTYMVLERIANSMIPKRASGNYLRMNIGENP
DLYGPFWITVTLIFSIAISGNIASYLQQATDAYKWHYNFHLVSYAATSIF
LYANILPAVLWALFKYSLKPVDSADAVETDSASYMPSLLSLMCIYGYSLA
IYIPVSILWVINISLLQWLLVITAALLSGTVLIAVLTPALRNSQFSLFLI
VGILSAHVVLAAGFLLYFFHNPTVPSLDPVAPTPAAPAAPAALKAVTQAV
VNAVPGNQTHASFLDH
BO09035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4645-PB | 360 | CG4645-PB | 1..360 | 1..360 | 1845 | 100 | Plus |
CG4645-PC | 360 | CG4645-PC | 1..360 | 1..360 | 1845 | 100 | Plus |
CG4645-PA | 360 | CG4645-PA | 1..360 | 1..360 | 1845 | 100 | Plus |