Clone Sequence Records
BO09040.3prime Sequence
925 bp (848 high quality bases) assembled on 2006-01-10
> BO09040.3prime
ATGGTCTAGAAAGCTTGCATGATCCGTGCTGAGCCCATCCTCCACGTTGC
TGTCCCAGTTGAATTCCGTGACGCCCTGCTTGAAGTAGATGTTGCCCAGA
TTGGCGTAGCGCTGCTCAAAGTTTGTGTCCTTTGCCTTCAGATGTTCGAA
ACGCTGAAAGAGCAAAGTCTTGGCAAAGGCATACAGCTCAATGTCCAGAC
TGTTTAGCTTCTCGATGCGACGCTTCTGGTCGGGTCGAAGATTCTGGACA
GCAGTCGCCGAGATTGTGGTGTTGTGCTGCTCGAAGGGAATGGCGAAACG
CAGGTTGAAAGTCTCCTCGAAAATGTACTGGGACATCTTTTGATATTCAG
TCAGTCCAAAGTAGGCCATGGCGGCCAGATTGCGCTTTGCGCTGGCCAGC
ATCACGCGATCCCGCTCATGAGCGGGCATCGAAGACTTGTTGTAGCAGCC
GACGAGGGCGAGATCGGCCAGCATGCGGGTCTGGCGGTTAGCCGCCAGAT
TGGACTCGCAGCCGGCGAACTGGTCAAGATCCACGTCCAGCCAGTCCTTG
CCCTTGTAGCAAGCGGGCAGCTCGGCGGCGGTGGCCTGGCGGCCCAGGCA
CCAATGGCGTGATCCCTTCCAGGTGGCGCCCCGCCGCACATGCCGATACT
CGGACATGTAGCGAGCAATGGGTTGTCGCAGCAGAGAAATGTAAAAGTAC
CGCCGCTTGGCCGTCTCCCCTTCGTTCTTGTCGAGCTCCACGTCCACGCA
GCTGGTCAGCTCGGTCCAGTCGGCATGGAGGCCGCATTTCCAGCCCGTCG
AGTAGCGCGAAAAGAGCCAGTTCTCATTGCGATGCGGTCGGAAGCAGTAG
CAACGCTTCCTTTGCCGCTGGCACTCACAGGGACGCTTTAAATCCAGATC
CCTGACCAAATGGCGGCCAAACGAG
BO09040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4451-PA | 1389 | Hs6st-RA | 480..1386 | 925..19 | 4535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs6st-RB | 3100 | CG4451-RB | 1071..1977 | 925..19 | 4535 | 100 | Minus |
| Hs6st-RA | 2657 | CG4451-RA | 1071..1977 | 925..19 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19937502..19938052 | 337..887 | 2755 | 100 | Plus |
| 3R | 32079331 | 3R | 19937254..19937440 | 152..338 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 19930400..19930533 | 19..152 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 19938124..19938163 | 886..925 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:09:15 has no hits.
BO09040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:08 Download gff for
BO09040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-PA | 480..1389 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:51 Download gff for
BO09040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4451-PA | 480..1389 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:51 Download gff for
BO09040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 1071..1983 | 12..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:26:42 Download gff for
BO09040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 1071..1983 | 12..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:26:42 Download gff for
BO09040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19930394..19930532 | 12..151 | 97 | <- | Plus |
| 3R | 19937254..19937438 | 152..336 | 100 | <- | Plus |
| 3R | 19937502..19938050 | 337..885 | 100 | <- | Plus |
| 3R | 19938124..19938163 | 886..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:51 Download gff for
BO09040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15756116..15756254 | 12..151 | 97 | <- | Plus |
| arm_3R | 15762976..15763160 | 152..336 | 100 | <- | Plus |
| arm_3R | 15763224..15763772 | 337..885 | 100 | <- | Plus |
| arm_3R | 15763846..15763885 | 886..925 | 100 | | Plus |
BO09040.5prime Sequence
896 bp (800 high quality bases) assembled on 2006-01-10
> BO09040.5prime
GAAGTTATCAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTC
AAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATC
AAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCT
CTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATC
AGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATC
CTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAA
TGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGG
CCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGG
TTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGG
CCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGT
TTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGC
CAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAGAA
CTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCG
ACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACGAA
GGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACC
CATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCT
GGAANGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCGCCGAG
CTGCCCGCTTTGCTACAGGGCAAGGACTGGCTGGACGTGGATCTTG
BO09040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4451-PA | 1389 | Hs6st-RA | 1..844 | 17..860 | 4201 | 99.8 | Plus |
| CG4451-PA | 1389 | Hs6st-RA | 851..880 | 867..896 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs6st-RB | 3100 | CG4451-RB | 590..1471 | 15..896 | 4354 | 99.7 | Plus |
| Hs6st-RA | 2657 | CG4451-RA | 590..1471 | 15..896 | 4354 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19937690..19938052 | 896..534 | 1714 | 98.1 | Minus |
| 3R | 32079331 | 3R | 19938124..19938459 | 535..200 | 1680 | 100 | Minus |
| 3R | 32079331 | 3R | 20006232..20006422 | 205..15 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:44:17 has no hits.
BO09040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:09 Download gff for
BO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:53 Download gff for
BO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4451-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:28 Download gff for
BO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 590..1471 | 15..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:44 Download gff for
BO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 590..1471 | 15..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:44 Download gff for
BO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19937690..19938050 | 536..896 | 99 | <- | Minus |
| 3R | 19938124..19938456 | 203..535 | 100 | <- | Minus |
| 3R | 20006235..20006422 | 15..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:28 Download gff for
BO09040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15763412..15763772 | 536..896 | 99 | <- | Minus |
| arm_3R | 15763846..15764178 | 203..535 | 100 | <- | Minus |
| arm_3R | 15831957..15832144 | 15..202 | 100 | | Minus |
BO09040.complete Sequence
1420 bp (1420 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631361
> BO09040.complete
GAAGTTATCAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTC
AAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATC
AAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCT
CTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATC
AGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATC
CTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAA
TGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGG
CCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGG
TTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGG
CCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGT
TTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGC
CAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAGAA
CTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCG
ACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACGAA
GGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACC
CATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCT
GGAAGGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCGCCGAG
CTGCCCGCTTGCTACAAGGGCAAGGACTGGCTGGACGTGGATCTTGACCA
GTTCGCCGGCTGCGAGTCCAATCTGGCGGCTAACCGCCAGACCCGCATGC
TGGCCGATCTCGCCCTCGTCGGCTGCTACAACAAGTCTTCGATGCCCGCT
CATGAGCGGGATCGCGTGATGCTGGCCAGCGCAAAGCGCAATCTGGCCGC
CATGGCCTACTTTGGACTGACTGAATATCAAAAGATGTCCCAGTACATTT
TCGAGGAGACTTTCAACCTGCGTTTCGCCATTCCCTTCGAGCAGCACAAC
ACCACAATCTCGGCGACTGCTGTCCAGAATCTTCGACCCGACCAGAAGCG
TCGCATCGAGAAGCTAAACAGTCTGGACATTGAGCTGTATGCCTTTGCCA
AGACTTTGCTCTTTCAGCGTTTCGAACATCTGAAGGCAAAGGACACAAAC
TTTGAGCAGCGCTACGCCAATCTGGGCAACATCTACTTCAAGCAGGGCGT
CACGGAATTCAACTGGGACAGCAACGTGGAGGATGGGCTCAGCACGGATC
ATGCAAGCTTTCTAGACCAT
BO09040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs6st-RB | 1389 | CG4451-PB | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| Hs6st-RA | 1389 | CG4451-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs6st-RB | 3100 | CG4451-RB | 590..1977 | 15..1402 | 6940 | 100 | Plus |
| Hs6st-RA | 2657 | CG4451-RA | 590..1977 | 15..1402 | 6940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19937502..19938052 | 1084..534 | 2755 | 100 | Minus |
| 3R | 32079331 | 3R | 19938124..19938459 | 535..200 | 1680 | 100 | Minus |
| 3R | 32079331 | 3R | 20006232..20006422 | 205..15 | 955 | 100 | Minus |
| 3R | 32079331 | 3R | 19937254..19937440 | 1269..1083 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 19930400..19930533 | 1402..1269 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:33:07 has no hits.
BO09040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:41 Download gff for
BO09040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 1..1389 | 17..1405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:20 Download gff for
BO09040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 602..1987 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:26 Download gff for
BO09040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 592..1977 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:42 Download gff for
BO09040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 600..1993 | 15..1409 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:23 Download gff for
BO09040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 592..1977 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:23 Download gff for
BO09040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19930397..19930532 | 1270..1404 | 98 | <- | Minus |
| 3R | 19937254..19937438 | 1085..1269 | 100 | <- | Minus |
| 3R | 19937502..19938050 | 536..1084 | 100 | <- | Minus |
| 3R | 19938124..19938456 | 203..535 | 100 | <- | Minus |
| 3R | 20006235..20006420 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:26 Download gff for
BO09040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15756119..15756254 | 1270..1404 | 98 | <- | Minus |
| arm_3R | 15762976..15763160 | 1085..1269 | 100 | <- | Minus |
| arm_3R | 15763224..15763772 | 536..1084 | 100 | <- | Minus |
| arm_3R | 15763846..15764178 | 203..535 | 100 | <- | Minus |
| arm_3R | 15831957..15832142 | 17..202 | 100 | | Minus |
BO09040.pep Sequence
Translation from 16 to 1420
> BO09040.pep
MPGDMHKNVSVQVDSDFALLLPSGVYEIKKMEPRSKIRTIIVFCLFLAIA
GIIGFGYFCQDQVCALSKRAVILQSSDILAYNELPLHQANSINGNANGNS
NGNGNSVGGITAMASKSSAPQNIIANAGLSYEDVLNDDFQFDMDGHDVMV
FLHIQKTGGTSFGRHLVRDLDLKRPCECQRQRKRCYCFRPHRNENWLFSR
YSTGWKCGLHADWTELTSCVDVELDKNEGETAKRRYFYISLLRQPIARYM
SEYRHVRRGATWKGSRHWCLGRQATAAELPACYKGKDWLDVDLDQFAGCE
SNLAANRQTRMLADLALVGCYNKSSMPAHERDRVMLASAKRNLAAMAYFG
LTEYQKMSQYIFEETFNLRFAIPFEQHNTTISATAVQNLRPDQKRRIEKL
NSLDIELYAFAKTLLFQRFEHLKAKDTNFEQRYANLGNIYFKQGVTEFNW
DSNVEDGLSTDHASFLDH
BO09040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs6st-PB | 462 | CG4451-PB | 1..462 | 1..462 | 2458 | 100 | Plus |
| Hs6st-PA | 462 | CG4451-PA | 1..462 | 1..462 | 2458 | 100 | Plus |
