Clone BO09041 Report

Search the DGRC for BO09041

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG9243-RA
Protein status:BO09041.pep: validated full length
Sequenced Size:1513

Clone Sequence Records

BO09041.3prime Sequence

899 bp (826 high quality bases) assembled on 2006-01-10

> BO09041.3prime
ATGGTCTAGAAAGCTTGCAATTCGTAAAATTGGTTTCAGTGGCAATGCAT
AGGGACTAAACCAGTCCCGCAGAAAAATTGCCATTAAATCTGTACGGAGA
CTATTATTGTTGTATTCCATGTCCTGGAGTACTAATCCAATGCCAGCTGA
GTAAGTAAAATGCTCTCCCGAAAAACTGGAGGTGCCTATAAAGGCAACCC
TATCGGTGACTAAGTACGAGTTGCAGTTAACTCTACCGCCGGAAATCCTC
TCCAGTTCATTTGTGGTGGGTACAACAAAACGTCGCATTTGTATATCTAC
TCCTTCCGTAATTTTGTCGAGCGCTTGAAGGGACCTCAAGAAGTGATCCT
CGCTGGGATCCGAATACTTCCACCATGAAATAAGCACCTTAATGGCCACA
CCGCGTTCCAAGGCAGCTCTACGCAGGGCATTGTCTATGACCGGCCAGTA
CTCCAATTTGTTACTCCGTCTTAGCCGAGGAGAGTACTCCATTAAGGAGA
GGTATATAACGTCTGTGGCCTTGTCGATAGCCTCTAAAATGGCATCTAGC
TCTCGGGTCCTTCCAGTAGCGATCAACTCTGGTGGTGATGTGGATAAATA
AGCTCTCATTGTATGTTTTTTGTTGATGTTTAGCAAAAGCGGTCTTCTTT
GATTGATGTGCGTGTGGTATATCCACGGCCAGCTCTTTGGCACTTCATTG
CTGCCCAGGTACCAATACGCCTTGAAGATCTTTCCCAGATCTAGAGCAAG
ATGGGGACAATTTCTGGCCAGCACACCTAGTTCCTTGCGTTGCGTCAGTG
ATCGCCAGTCCATGCTAGCTGTGCCCAAGTAGAAGTGCTCCCCGTCCACT
AACCACAGTTTTGAGTGCAGAAAATTAATGCCCACGACGTCGGCTGCTC

BO09041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9243-PA 1482 CG9243-RA 599..1479 899..19 4405 100 Minus
CG9243-PB 1725 CG9243-RB 599..1261 899..237 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG43346-RC 2482 CG43346-RC 966..1846 899..19 4405 100 Minus
CG43346-RA 2250 CG9243-RB 734..1614 899..19 4405 100 Minus
CG43345-RC 2482 CG43345-RC 966..1846 899..19 4405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167003..21167616 286..899 3070 100 Plus
2L 23513712 2L 21166682..21166949 19..286 1340 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:31:11 has no hits.

BO09041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:10 Download gff for BO09041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 599..1482 16..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:54 Download gff for BO09041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 599..1482 16..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:52 Download gff for BO09041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43346-RA 734..1620 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:57 Download gff for BO09041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43345-RC 966..1852 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:57 Download gff for BO09041.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21166676..21166948 11..285 98 <- Plus
2L 21167003..21167616 286..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:52 Download gff for BO09041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21166676..21166948 11..285 98 <- Plus
arm_2L 21167003..21167616 286..899 100   Plus

BO09041.5prime Sequence

854 bp (826 high quality bases) assembled on 2006-01-10

> BO09041.5prime
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGGGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGC

BO09041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9243-PB 1725 CG9243-RB 1..838 17..854 4190 100 Plus
CG9243-PA 1482 CG9243-RA 1..838 17..854 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG43346-RC 2482 CG43346-RC 367..1205 16..854 4195 100 Plus
CG43346-RA 2250 CG9243-RB 135..973 16..854 4195 100 Plus
CG43345-RC 2482 CG43345-RC 367..1205 16..854 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167377..21168215 854..16 4195 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:18:02 has no hits.

BO09041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:12 Download gff for BO09041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:56 Download gff for BO09041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9243-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:35 Download gff for BO09041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43346-RA 135..973 16..854 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:42 Download gff for BO09041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43345-RC 367..1205 16..854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:42 Download gff for BO09041.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21167377..21168215 16..854 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:35 Download gff for BO09041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21167377..21168215 16..854 100   Minus

BO09041.complete Sequence

1513 bp (1513 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631362

> BO09041.complete
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGGGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGCACATCAATCAAAGAAGACCGCTTTTGCTAAACATCAACAAAAAACA
TACAATGAGAGCTTATTTATCCACATCACCACCAGAGTTGATCGCTACTG
GAAGGACCCGAGAGCTAGATGCCATTTTAGAGGCTATCGACAAGGCCACA
GACGTTATATACCTCTCCTTAATGGAGTACTCTCCTCGGCTAAGACGGAG
TAACAAATTGGAGTACTGGCCGGTCATAGACAATGCCCTGCGTAGAGCTG
CCTTGGAACGCGGTGTGGCCATTAAGGTGCTTATTTCATGGTGGAAGTAT
TCGGATCCCAGCGAGGATCACTTCTTGAGGTCCCTTCAAGCGCTCGACAA
AATTACGGAAGGAGTAGATATACAAATGCGACGTTTTGTTGTACCCACCA
CAAATGAACTGGAGAGGATTTCCGGCGGTAGAGTTAACTGCAACTCGTAC
TTAGTCACCGATAGGGTTGCCTTTATAGGCACCTCCAGTTTTTCGGGAGA
GCATTTTACTTACTCAGCTGGCATTGGATTAGTACTCCAGGACATGGAAT
ACAACAATAATAGTCTCCGTACAGATTTAATGGCAATTTTTCTGCGGGAC
TGGTTTAGTCCCTATGCATTGCCACTGAAACCAATTTTACGAATTGCAAG
CTTTCTAGACCAT

BO09041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG43345-RC 1482 CG43345-PC 1..1479 17..1495 7395 100 Plus
CG43345-RB 1482 CG43345-PB 1..1479 17..1495 7395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG43346-RC 2482 CG43346-RC 367..1846 16..1495 7400 100 Plus
CG43346-RA 2250 CG9243-RB 135..1614 16..1495 7400 100 Plus
CG43345-RC 2482 CG43345-RC 367..1846 16..1495 7400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167003..21168215 1228..16 6065 100 Minus
2L 23513712 2L 21166682..21166949 1495..1228 1340 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:04:15 has no hits.

BO09041.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:43 Download gff for BO09041.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 1..1482 17..1498 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:36 Download gff for BO09041.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 130..1615 16..1503 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:38 Download gff for BO09041.complete
Subject Subject Range Query Range Percent Splice Strand
CG43346-RA 136..1614 17..1497 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:43 Download gff for BO09041.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 130..1615 16..1503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:11 Download gff for BO09041.complete
Subject Subject Range Query Range Percent Splice Strand
CG43345-RC 368..1846 17..1497 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:11 Download gff for BO09041.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21166679..21166948 1229..1497 99 <- Minus
2L 21167003..21168214 17..1228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:38 Download gff for BO09041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21166679..21166948 1229..1497 99 <- Minus
arm_2L 21167003..21168214 17..1228 100   Minus

BO09041.pep Sequence

Translation from 16 to 1513

> BO09041.pep
MSERRVVHEIPGEYQPVPRAPEEPTPLTTSCCRRPNCGLGLQDERNICSC
KHGYIIPVLILFVLVMIVLLLPWETYHRNENGNSPVPVEKPLPCQLELVE
SLPLGLNYSQWQSHPQLSSTFDAWQLLLGRAKASLDIVSPHWTLRGLDVN
DSSTGPGDQLFQQLLSNGDAGRPKLRVRIVVNRSHDSLWHADARILANYG
AADVVGINFLHSKLWLVDGEHFYLGTASMDWRSLTQRKELGVLARNCPHL
ALDLGKIFKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINKKHTMRAY
LSTSPPELIATGRTRELDAILEAIDKATDVIYLSLMEYSPRLRRSNKLEY
WPVIDNALRRAALERGVAIKVLISWWKYSDPSEDHFLRSLQALDKITEGV
DIQMRRFVVPTTNELERISGGRVNCNSYLVTDRVAFIGTSSFSGEHFTYS
AGIGLVLQDMEYNNNSLRTDLMAIFLRDWFSPYALPLKPILRIASFLDH

BO09041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG43345-PC 493 CG43345-PC 1..493 1..493 2622 100 Plus
CG43345-PB 493 CG9243-PA 1..493 1..493 2622 100 Plus
CG9248-PC 494 CG9248-PC 33..493 42..487 1018 45.3 Plus
CG9248-PA 494 CG9248-PA 33..493 42..487 1018 45.3 Plus
CG9248-PB 494 CG9248-PB 33..493 42..487 1018 45.3 Plus