Clone Sequence Records
BO09041.3prime Sequence
899 bp (826 high quality bases) assembled on 2006-01-10
> BO09041.3prime
ATGGTCTAGAAAGCTTGCAATTCGTAAAATTGGTTTCAGTGGCAATGCAT
AGGGACTAAACCAGTCCCGCAGAAAAATTGCCATTAAATCTGTACGGAGA
CTATTATTGTTGTATTCCATGTCCTGGAGTACTAATCCAATGCCAGCTGA
GTAAGTAAAATGCTCTCCCGAAAAACTGGAGGTGCCTATAAAGGCAACCC
TATCGGTGACTAAGTACGAGTTGCAGTTAACTCTACCGCCGGAAATCCTC
TCCAGTTCATTTGTGGTGGGTACAACAAAACGTCGCATTTGTATATCTAC
TCCTTCCGTAATTTTGTCGAGCGCTTGAAGGGACCTCAAGAAGTGATCCT
CGCTGGGATCCGAATACTTCCACCATGAAATAAGCACCTTAATGGCCACA
CCGCGTTCCAAGGCAGCTCTACGCAGGGCATTGTCTATGACCGGCCAGTA
CTCCAATTTGTTACTCCGTCTTAGCCGAGGAGAGTACTCCATTAAGGAGA
GGTATATAACGTCTGTGGCCTTGTCGATAGCCTCTAAAATGGCATCTAGC
TCTCGGGTCCTTCCAGTAGCGATCAACTCTGGTGGTGATGTGGATAAATA
AGCTCTCATTGTATGTTTTTTGTTGATGTTTAGCAAAAGCGGTCTTCTTT
GATTGATGTGCGTGTGGTATATCCACGGCCAGCTCTTTGGCACTTCATTG
CTGCCCAGGTACCAATACGCCTTGAAGATCTTTCCCAGATCTAGAGCAAG
ATGGGGACAATTTCTGGCCAGCACACCTAGTTCCTTGCGTTGCGTCAGTG
ATCGCCAGTCCATGCTAGCTGTGCCCAAGTAGAAGTGCTCCCCGTCCACT
AACCACAGTTTTGAGTGCAGAAAATTAATGCCCACGACGTCGGCTGCTC
BO09041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9243-PA | 1482 | CG9243-RA | 599..1479 | 899..19 | 4405 | 100 | Minus |
CG9243-PB | 1725 | CG9243-RB | 599..1261 | 899..237 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43346-RC | 2482 | CG43346-RC | 966..1846 | 899..19 | 4405 | 100 | Minus |
CG43346-RA | 2250 | CG9243-RB | 734..1614 | 899..19 | 4405 | 100 | Minus |
CG43345-RC | 2482 | CG43345-RC | 966..1846 | 899..19 | 4405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21167003..21167616 | 286..899 | 3070 | 100 | Plus |
2L | 23513712 | 2L | 21166682..21166949 | 19..286 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:31:11 has no hits.
BO09041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:10 Download gff for
BO09041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 599..1482 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:54 Download gff for
BO09041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 599..1482 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:52 Download gff for
BO09041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43346-RA | 734..1620 | 11..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:57 Download gff for
BO09041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43345-RC | 966..1852 | 11..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:57 Download gff for
BO09041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21166676..21166948 | 11..285 | 98 | <- | Plus |
2L | 21167003..21167616 | 286..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:52 Download gff for
BO09041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21166676..21166948 | 11..285 | 98 | <- | Plus |
arm_2L | 21167003..21167616 | 286..899 | 100 | | Plus |
BO09041.5prime Sequence
854 bp (826 high quality bases) assembled on 2006-01-10
> BO09041.5prime
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGGGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGC
BO09041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9243-PB | 1725 | CG9243-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
CG9243-PA | 1482 | CG9243-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43346-RC | 2482 | CG43346-RC | 367..1205 | 16..854 | 4195 | 100 | Plus |
CG43346-RA | 2250 | CG9243-RB | 135..973 | 16..854 | 4195 | 100 | Plus |
CG43345-RC | 2482 | CG43345-RC | 367..1205 | 16..854 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21167377..21168215 | 854..16 | 4195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:18:02 has no hits.
BO09041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:12 Download gff for
BO09041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:56 Download gff for
BO09041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:35 Download gff for
BO09041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43346-RA | 135..973 | 16..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:42 Download gff for
BO09041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43345-RC | 367..1205 | 16..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:42 Download gff for
BO09041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21167377..21168215 | 16..854 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:35 Download gff for
BO09041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21167377..21168215 | 16..854 | 100 | | Minus |
BO09041.complete Sequence
1513 bp (1513 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631362
> BO09041.complete
GAAGTTATCAGTCGACATGTCCGAGCGTCGCGTAGTGCATGAGATACCCG
GAGAGTACCAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACC
ACATCGTGTTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCG
AAATATCTGTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCT
TCGTTCTGGTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGA
AATGAAAACGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCA
ACTCGAACTGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGC
AAAGCCACCCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTA
GGCAGGGCCAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCG
CGGCTTGGACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTC
AGCAGCTACTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGG
ATTGTGGTTAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTAT
CTTGGCTAACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACT
CAAAACTGTGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGC
ATGGACTGGCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAG
AAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGATCTTCAAGGCGTATT
GGTACCTGGGCAGCAATGAAGTGCCAAAGAGCTGGCCGTGGATATACCAC
ACGCACATCAATCAAAGAAGACCGCTTTTGCTAAACATCAACAAAAAACA
TACAATGAGAGCTTATTTATCCACATCACCACCAGAGTTGATCGCTACTG
GAAGGACCCGAGAGCTAGATGCCATTTTAGAGGCTATCGACAAGGCCACA
GACGTTATATACCTCTCCTTAATGGAGTACTCTCCTCGGCTAAGACGGAG
TAACAAATTGGAGTACTGGCCGGTCATAGACAATGCCCTGCGTAGAGCTG
CCTTGGAACGCGGTGTGGCCATTAAGGTGCTTATTTCATGGTGGAAGTAT
TCGGATCCCAGCGAGGATCACTTCTTGAGGTCCCTTCAAGCGCTCGACAA
AATTACGGAAGGAGTAGATATACAAATGCGACGTTTTGTTGTACCCACCA
CAAATGAACTGGAGAGGATTTCCGGCGGTAGAGTTAACTGCAACTCGTAC
TTAGTCACCGATAGGGTTGCCTTTATAGGCACCTCCAGTTTTTCGGGAGA
GCATTTTACTTACTCAGCTGGCATTGGATTAGTACTCCAGGACATGGAAT
ACAACAATAATAGTCTCCGTACAGATTTAATGGCAATTTTTCTGCGGGAC
TGGTTTAGTCCCTATGCATTGCCACTGAAACCAATTTTACGAATTGCAAG
CTTTCTAGACCAT
BO09041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43345-RC | 1482 | CG43345-PC | 1..1479 | 17..1495 | 7395 | 100 | Plus |
CG43345-RB | 1482 | CG43345-PB | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43346-RC | 2482 | CG43346-RC | 367..1846 | 16..1495 | 7400 | 100 | Plus |
CG43346-RA | 2250 | CG9243-RB | 135..1614 | 16..1495 | 7400 | 100 | Plus |
CG43345-RC | 2482 | CG43345-RC | 367..1846 | 16..1495 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21167003..21168215 | 1228..16 | 6065 | 100 | Minus |
2L | 23513712 | 2L | 21166682..21166949 | 1495..1228 | 1340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:04:15 has no hits.
BO09041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:43 Download gff for
BO09041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-RA | 1..1482 | 17..1498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:36 Download gff for
BO09041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-RA | 130..1615 | 16..1503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:38 Download gff for
BO09041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43346-RA | 136..1614 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:43 Download gff for
BO09041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9243-RA | 130..1615 | 16..1503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:11 Download gff for
BO09041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43345-RC | 368..1846 | 17..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:11 Download gff for
BO09041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21166679..21166948 | 1229..1497 | 99 | <- | Minus |
2L | 21167003..21168214 | 17..1228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:38 Download gff for
BO09041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21166679..21166948 | 1229..1497 | 99 | <- | Minus |
arm_2L | 21167003..21168214 | 17..1228 | 100 | | Minus |
BO09041.pep Sequence
Translation from 16 to 1513
> BO09041.pep
MSERRVVHEIPGEYQPVPRAPEEPTPLTTSCCRRPNCGLGLQDERNICSC
KHGYIIPVLILFVLVMIVLLLPWETYHRNENGNSPVPVEKPLPCQLELVE
SLPLGLNYSQWQSHPQLSSTFDAWQLLLGRAKASLDIVSPHWTLRGLDVN
DSSTGPGDQLFQQLLSNGDAGRPKLRVRIVVNRSHDSLWHADARILANYG
AADVVGINFLHSKLWLVDGEHFYLGTASMDWRSLTQRKELGVLARNCPHL
ALDLGKIFKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINKKHTMRAY
LSTSPPELIATGRTRELDAILEAIDKATDVIYLSLMEYSPRLRRSNKLEY
WPVIDNALRRAALERGVAIKVLISWWKYSDPSEDHFLRSLQALDKITEGV
DIQMRRFVVPTTNELERISGGRVNCNSYLVTDRVAFIGTSSFSGEHFTYS
AGIGLVLQDMEYNNNSLRTDLMAIFLRDWFSPYALPLKPILRIASFLDH
BO09041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43345-PC | 493 | CG43345-PC | 1..493 | 1..493 | 2622 | 100 | Plus |
CG43345-PB | 493 | CG9243-PA | 1..493 | 1..493 | 2622 | 100 | Plus |
CG9248-PC | 494 | CG9248-PC | 33..493 | 42..487 | 1018 | 45.3 | Plus |
CG9248-PA | 494 | CG9248-PA | 33..493 | 42..487 | 1018 | 45.3 | Plus |
CG9248-PB | 494 | CG9248-PB | 33..493 | 42..487 | 1018 | 45.3 | Plus |