Clone BO09042 Report

Search the DGRC for BO09042

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4502-RA
Protein status:BO09042.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO09042.3prime Sequence

882 bp (768 high quality bases) assembled on 2006-01-10

> BO09042.3prime
ATGGTCTAGAAAGCTTGCTCCATCGGACAGGGCGGGCGTTACCCATCCGT
ACTTCTCGTGCGTCTTCACCAGCGAACGGAACGACTCCTCAGCCTGGCGC
CGAGTGAACTCCTTTGTACTCTTTGGCTTGCGCGCGATCCTGCCTTGGCC
CTTAACCACGCTGGCTGCGAACTGCATGATGACCGCCTCCACCGTATAGG
CACTGGCCCATCCGCGTGGGGTTAAGAGCTCCATGCAGATGGCGCCACCC
TCCATCACGTAACCCTTCTCGATGTGCGGCTCCACCACGCGCATAAAGGG
CGGGGCAAAGGGGAAGTTGTCGGGGAAACTCAGGTGCAACAGTATGGCCG
GCACACCCATCTCGGCCATATCTCTGGCCAGCGGCGAGTCGGGATCAATC
ACGTGCAGGCGTACGTGCCACTCGAATAGACTATCGTTGACGAGTTCCAC
CGTGAAGACAGCATCGTTCTTGGCCTGCAGTCGCTCCATTTCGCGGTATT
CTTTCATCAGGCGACGGGTTCGAATCGTATGATCCGGAGCCGCCACCAGT
TGGCGTTCCGTTGTCGGCGCCACCTTGTGATCTTGTCGTCGCCGCTTGCC
TGGTGAATCCCACACAGCTTGCTCGGCTGCCATTCGAACTACGGCATTTT
TTGCGGCACCGGATGATCCCGACGATCCTACTGCTCCACCGGCCACGGCG
ACGCCTCCTGCCGAAGAGGGTGCTGCTGCTCCATCGTGATTGTTGTTATT
ATTATTATTATTATTATTGTTGTTTATTAATTCGGGCTGCTGCCAGTGGC
GCCATCGACCTTGTCATTGTTGTTATTATTATTTATATTATTATTATGGT
TGTTGTTGTTATTATTATTGTTGTTGCTGAAC

BO09042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PB 921 CG4502-RB 160..918 777..19 3795 100 Minus
CG4502-PA 921 CG4502-RA 160..918 777..19 3795 100 Minus
CG4502-PB 921 CG4502-RB 60..159 879..780 500 100 Minus
CG4502-PA 921 CG4502-RA 60..159 879..780 500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 2078 CG4502-RA 569..1427 879..19 4265 99.8 Minus
CG4502-RB 2027 CG4502-RB 518..1376 879..19 4265 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7195702..7196053 100..451 1760 100 Plus
2L 23513712 2L 7196312..7196615 574..879 1465 99.3 Plus
2L 23513712 2L 7196110..7196235 449..574 630 100 Plus
2L 23513712 2L 7195559..7195641 19..101 415 100 Plus
Blast to na_te.dros performed on 2015-02-01 07:03:59 has no hits.

BO09042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:13 Download gff for BO09042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 57..921 15..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:57 Download gff for BO09042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 57..921 15..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:26 Download gff for BO09042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 515..1381 13..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:40:40 Download gff for BO09042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 515..1381 13..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:40:40 Download gff for BO09042.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7195554..7195640 13..100 97 <- Plus
2L 7195703..7196052 101..450 100 <- Plus
2L 7196112..7196235 451..574 100 <- Plus
2L 7196313..7196618 575..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:26 Download gff for BO09042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7195554..7195640 13..100 97 <- Plus
arm_2L 7195703..7196052 101..450 100 <- Plus
arm_2L 7196112..7196235 451..574 100 <- Plus
arm_2L 7196313..7196618 575..882 99   Plus

BO09042.5prime Sequence

861 bp (821 high quality bases) assembled on 2006-01-10

> BO09042.5prime
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCAAAGAGTACAAAGGAGTTCACTC
GGCGCCAGGCT

BO09042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PB 921 CG4502-RB 1..811 17..827 4055 100 Plus
CG4502-PA 921 CG4502-RA 1..811 17..827 4055 100 Plus
CG4502-PB 921 CG4502-RB 812..846 827..861 175 100 Plus
CG4502-PA 921 CG4502-RA 812..846 827..861 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 2078 CG4502-RA 510..1355 17..861 4205 99.9 Plus
CG4502-RB 2027 CG4502-RB 459..1304 17..861 4205 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7196312..7196674 379..17 1815 100 Minus
2L 23513712 2L 7195702..7196053 852..502 1710 99.7 Minus
2L 23513712 2L 7196110..7196235 504..379 630 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:54:02 has no hits.

BO09042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:14 Download gff for BO09042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 1..846 17..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:58 Download gff for BO09042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-PA 1..846 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:27 Download gff for BO09042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 451..1304 9..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:40 Download gff for BO09042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 451..1304 9..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:40 Download gff for BO09042.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7195697..7196052 503..859 98 <- Minus
2L 7196112..7196235 379..502 100 <- Minus
2L 7196313..7196682 9..378 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:27 Download gff for BO09042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7195697..7196052 503..859 98 <- Minus
arm_2L 7196112..7196235 379..502 100 <- Minus
arm_2L 7196313..7196682 9..378 99   Minus

BO09042.complete Sequence

952 bp (952 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631363

> BO09042.complete
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCCAAAGAGTACAAAGGAGTTCACT
CGGCGCCAGGCTGAGGAGTCGTTCCGTTCGCTGGTGAAGACGCACGAGAA
GTACGGATGGGTAACGCCCGCCCTGTCCGATGGAGCAAGCTTTCTAGACC
AT

BO09042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 921 CG4502-PA 1..918 17..934 4590 100 Plus
CG4502-RB 921 CG4502-PB 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 2078 CG4502-RA 510..1427 17..934 4590 100 Plus
CG4502-RB 2027 CG4502-RB 459..1376 17..934 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7196312..7196674 379..17 1815 100 Minus
2L 23513712 2L 7195702..7196053 853..502 1760 100 Minus
2L 23513712 2L 7196110..7196235 504..379 630 100 Minus
2L 23513712 2L 7195559..7195641 934..852 415 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:59:04 has no hits.

BO09042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:44 Download gff for BO09042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 1..921 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:38 Download gff for BO09042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 497..1427 9..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:09 Download gff for BO09042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 459..1376 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:44 Download gff for BO09042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 497..1427 9..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:05 Download gff for BO09042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 459..1376 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:05 Download gff for BO09042.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7195557..7195640 853..936 97 <- Minus
2L 7195703..7196052 503..852 100 <- Minus
2L 7196112..7196235 379..502 100 <- Minus
2L 7196313..7196674 17..378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:09 Download gff for BO09042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7196112..7196235 379..502 100 <- Minus
arm_2L 7195557..7195640 853..936 97 <- Minus
arm_2L 7195703..7196052 503..852 100 <- Minus
arm_2L 7196313..7196674 17..378 100   Minus

BO09042.pep Sequence

Translation from 16 to 952

> BO09042.pep
MSSRSKERVVTAFRKIFHKSSNNNNNNNNNHNNNINNNNNNDKVDGATGS
SPNINNNNNNNNNNNNHDGAAAPSSAGGVAVAGGAVGSSGSSGAAKNAVV
RMAAEQAVWDSPGKRRRQDHKVAPTTERQLVAAPDHTIRTRRLMKEYREM
ERLQAKNDAVFTVELVNDSLFEWHVRLHVIDPDSPLARDMAEMGVPAILL
HLSFPDNFPFAPPFMRVVEPHIEKGYVMEGGAICMELLTPRGWASAYTVE
AVIMQFAASVVKGQGRIARKPKSTKEFTRRQAEESFRSLVKTHEKYGWVT
PALSDGASFLDH

BO09042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PA 306 CG4502-PA 1..306 1..306 1601 100 Plus
CG4502-PB 306 CG4502-PB 1..306 1..306 1601 100 Plus
CG2924-PD 397 CG2924-PD 224..397 140..306 452 51.7 Plus
CG2924-PB 397 CG2924-PB 224..397 140..306 452 51.7 Plus
CG2924-PE 397 CG2924-PE 224..397 140..306 452 51.7 Plus