Clone Sequence Records
BO09042.3prime Sequence
882 bp (768 high quality bases) assembled on 2006-01-10
> BO09042.3prime
ATGGTCTAGAAAGCTTGCTCCATCGGACAGGGCGGGCGTTACCCATCCGT
ACTTCTCGTGCGTCTTCACCAGCGAACGGAACGACTCCTCAGCCTGGCGC
CGAGTGAACTCCTTTGTACTCTTTGGCTTGCGCGCGATCCTGCCTTGGCC
CTTAACCACGCTGGCTGCGAACTGCATGATGACCGCCTCCACCGTATAGG
CACTGGCCCATCCGCGTGGGGTTAAGAGCTCCATGCAGATGGCGCCACCC
TCCATCACGTAACCCTTCTCGATGTGCGGCTCCACCACGCGCATAAAGGG
CGGGGCAAAGGGGAAGTTGTCGGGGAAACTCAGGTGCAACAGTATGGCCG
GCACACCCATCTCGGCCATATCTCTGGCCAGCGGCGAGTCGGGATCAATC
ACGTGCAGGCGTACGTGCCACTCGAATAGACTATCGTTGACGAGTTCCAC
CGTGAAGACAGCATCGTTCTTGGCCTGCAGTCGCTCCATTTCGCGGTATT
CTTTCATCAGGCGACGGGTTCGAATCGTATGATCCGGAGCCGCCACCAGT
TGGCGTTCCGTTGTCGGCGCCACCTTGTGATCTTGTCGTCGCCGCTTGCC
TGGTGAATCCCACACAGCTTGCTCGGCTGCCATTCGAACTACGGCATTTT
TTGCGGCACCGGATGATCCCGACGATCCTACTGCTCCACCGGCCACGGCG
ACGCCTCCTGCCGAAGAGGGTGCTGCTGCTCCATCGTGATTGTTGTTATT
ATTATTATTATTATTATTGTTGTTTATTAATTCGGGCTGCTGCCAGTGGC
GCCATCGACCTTGTCATTGTTGTTATTATTATTTATATTATTATTATGGT
TGTTGTTGTTATTATTATTGTTGTTGCTGAAC
BO09042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-PB | 921 | CG4502-RB | 160..918 | 777..19 | 3795 | 100 | Minus |
CG4502-PA | 921 | CG4502-RA | 160..918 | 777..19 | 3795 | 100 | Minus |
CG4502-PB | 921 | CG4502-RB | 60..159 | 879..780 | 500 | 100 | Minus |
CG4502-PA | 921 | CG4502-RA | 60..159 | 879..780 | 500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 2078 | CG4502-RA | 569..1427 | 879..19 | 4265 | 99.8 | Minus |
CG4502-RB | 2027 | CG4502-RB | 518..1376 | 879..19 | 4265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7195702..7196053 | 100..451 | 1760 | 100 | Plus |
2L | 23513712 | 2L | 7196312..7196615 | 574..879 | 1465 | 99.3 | Plus |
2L | 23513712 | 2L | 7196110..7196235 | 449..574 | 630 | 100 | Plus |
2L | 23513712 | 2L | 7195559..7195641 | 19..101 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:03:59 has no hits.
BO09042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:13 Download gff for
BO09042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 57..921 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:57 Download gff for
BO09042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 57..921 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:10:26 Download gff for
BO09042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 515..1381 | 13..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:40:40 Download gff for
BO09042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 515..1381 | 13..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:40:40 Download gff for
BO09042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7195554..7195640 | 13..100 | 97 | <- | Plus |
2L | 7195703..7196052 | 101..450 | 100 | <- | Plus |
2L | 7196112..7196235 | 451..574 | 100 | <- | Plus |
2L | 7196313..7196618 | 575..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:10:26 Download gff for
BO09042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7195554..7195640 | 13..100 | 97 | <- | Plus |
arm_2L | 7195703..7196052 | 101..450 | 100 | <- | Plus |
arm_2L | 7196112..7196235 | 451..574 | 100 | <- | Plus |
arm_2L | 7196313..7196618 | 575..882 | 99 | | Plus |
BO09042.5prime Sequence
861 bp (821 high quality bases) assembled on 2006-01-10
> BO09042.5prime
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCAAAGAGTACAAAGGAGTTCACTC
GGCGCCAGGCT
BO09042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-PB | 921 | CG4502-RB | 1..811 | 17..827 | 4055 | 100 | Plus |
CG4502-PA | 921 | CG4502-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
CG4502-PB | 921 | CG4502-RB | 812..846 | 827..861 | 175 | 100 | Plus |
CG4502-PA | 921 | CG4502-RA | 812..846 | 827..861 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 2078 | CG4502-RA | 510..1355 | 17..861 | 4205 | 99.9 | Plus |
CG4502-RB | 2027 | CG4502-RB | 459..1304 | 17..861 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7196312..7196674 | 379..17 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7195702..7196053 | 852..502 | 1710 | 99.7 | Minus |
2L | 23513712 | 2L | 7196110..7196235 | 504..379 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:54:02 has no hits.
BO09042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:14 Download gff for
BO09042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:58 Download gff for
BO09042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:27 Download gff for
BO09042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 451..1304 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:40 Download gff for
BO09042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 451..1304 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:40 Download gff for
BO09042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7195697..7196052 | 503..859 | 98 | <- | Minus |
2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
2L | 7196313..7196682 | 9..378 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:27 Download gff for
BO09042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7195697..7196052 | 503..859 | 98 | <- | Minus |
arm_2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
arm_2L | 7196313..7196682 | 9..378 | 99 | | Minus |
BO09042.complete Sequence
952 bp (952 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631363
> BO09042.complete
GAAGTTATCAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTG
CATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAAC
AACAACCATAATAATAATATAAATAATAATAACAACAATGACAAGGTCGA
TGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATA
ATAATAACAACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGC
GTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGC
AAAAAATGCCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCAC
CAGGCAAGCGGCGACGACAAGATCACAAGGTGGCGCCGACAACGGAACGC
CAACTGGTGGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAA
AGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCA
CGGTGGAACTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCAC
GTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGT
GCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCC
CGCCCTTTATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATG
GAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAG
TGCCTATACGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTA
AGGGCCAAGGCAGGATCGCGCGCAAGCCAAAGAGTACAAAGGAGTTCACT
CGGCGCCAGGCTGAGGAGTCGTTCCGTTCGCTGGTGAAGACGCACGAGAA
GTACGGATGGGTAACGCCCGCCCTGTCCGATGGAGCAAGCTTTCTAGACC
AT
BO09042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 921 | CG4502-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
CG4502-RB | 921 | CG4502-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-RA | 2078 | CG4502-RA | 510..1427 | 17..934 | 4590 | 100 | Plus |
CG4502-RB | 2027 | CG4502-RB | 459..1376 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7196312..7196674 | 379..17 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7195702..7196053 | 853..502 | 1760 | 100 | Minus |
2L | 23513712 | 2L | 7196110..7196235 | 504..379 | 630 | 100 | Minus |
2L | 23513712 | 2L | 7195559..7195641 | 934..852 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:59:04 has no hits.
BO09042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:44 Download gff for
BO09042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RA | 1..921 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:38 Download gff for
BO09042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RA | 497..1427 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:09 Download gff for
BO09042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 459..1376 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:44 Download gff for
BO09042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RA | 497..1427 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:05 Download gff for
BO09042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4502-RB | 459..1376 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:05 Download gff for
BO09042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7195557..7195640 | 853..936 | 97 | <- | Minus |
2L | 7195703..7196052 | 503..852 | 100 | <- | Minus |
2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
2L | 7196313..7196674 | 17..378 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:09 Download gff for
BO09042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7196112..7196235 | 379..502 | 100 | <- | Minus |
arm_2L | 7195557..7195640 | 853..936 | 97 | <- | Minus |
arm_2L | 7195703..7196052 | 503..852 | 100 | <- | Minus |
arm_2L | 7196313..7196674 | 17..378 | 100 | | Minus |
BO09042.pep Sequence
Translation from 16 to 952
> BO09042.pep
MSSRSKERVVTAFRKIFHKSSNNNNNNNNNHNNNINNNNNNDKVDGATGS
SPNINNNNNNNNNNNNHDGAAAPSSAGGVAVAGGAVGSSGSSGAAKNAVV
RMAAEQAVWDSPGKRRRQDHKVAPTTERQLVAAPDHTIRTRRLMKEYREM
ERLQAKNDAVFTVELVNDSLFEWHVRLHVIDPDSPLARDMAEMGVPAILL
HLSFPDNFPFAPPFMRVVEPHIEKGYVMEGGAICMELLTPRGWASAYTVE
AVIMQFAASVVKGQGRIARKPKSTKEFTRRQAEESFRSLVKTHEKYGWVT
PALSDGASFLDH
BO09042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4502-PA | 306 | CG4502-PA | 1..306 | 1..306 | 1601 | 100 | Plus |
CG4502-PB | 306 | CG4502-PB | 1..306 | 1..306 | 1601 | 100 | Plus |
CG2924-PD | 397 | CG2924-PD | 224..397 | 140..306 | 452 | 51.7 | Plus |
CG2924-PB | 397 | CG2924-PB | 224..397 | 140..306 | 452 | 51.7 | Plus |
CG2924-PE | 397 | CG2924-PE | 224..397 | 140..306 | 452 | 51.7 | Plus |