Clone Sequence Records
BO09043.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-01-10
> BO09043.5prime
GAAGTTATCAGTCGACATGCTCAAAGATGATAAGCTGGCGCAGCATGTGC
CCACACTGCATCCAACATCCGAGGAGCTGTCCATCGGCAACATGCGCTTC
ACTACATTCGACTTGGGTGGCCACACTCAGGCACGACGCGTCTGGAAGGA
CTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAATAGACGCCTGGGACC
GTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATTCGCTGCTCACGGAT
GAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGCAACAAAATCGATAA
GCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGTGTTCGGACTGTATC
AGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCGATTTGCCCGGCCGT
CCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGACAGGGCTACGGCGA
GGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAGCTTTCTAGACC
BO09043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 115..579 | 17..481 | 2325 | 100 | Plus |
CG7073-PB | 468 | sar1-RB | 1..465 | 17..481 | 2325 | 100 | Plus |
CG7073-PD | 582 | sar1-RD | 115..579 | 17..481 | 2325 | 100 | Plus |
CG7073-PC | 582 | sar1-RC | 115..579 | 17..481 | 2325 | 100 | Plus |
CG7073-PE | 582 | sar1-RE | 115..579 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 227..691 | 17..481 | 2325 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 576..1040 | 17..481 | 2325 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 327..791 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 131..368 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359950 | 366..481 | 580 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 66..131 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22358443..22358491 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:50:07 has no hits.
BO09043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:16 Download gff for
BO09043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-PA | 115..582 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:00 Download gff for
BO09043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 115..582 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:06 Download gff for
BO09043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 278..746 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:00 Download gff for
BO09043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 327..795 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:00 Download gff for
BO09043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22358443..22358491 | 17..65 | 100 | -> | Plus |
3R | 22358563..22358628 | 66..131 | 100 | -> | Plus |
3R | 22359525..22359760 | 132..367 | 100 | -> | Plus |
3R | 22359837..22359954 | 368..486 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:06 Download gff for
BO09043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18184165..18184213 | 17..65 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 66..131 | 100 | -> | Plus |
arm_3R | 18185247..18185482 | 132..367 | 100 | -> | Plus |
arm_3R | 18185559..18185676 | 368..486 | 98 | | Plus |
BO09043.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-01-10
> BO09043.3prime
ATGGTCTAGAAAGCTTGCATCGATATACTGCGCCAGCCAACGGAAACCCT
CGCCGTAGCCCTGTCGCTTCAGCACGGAGCACATGAACAATTCCAGAGGA
CGGCCGGGCAAATCGGCGCGTGCAACTTTGCCCTTGCCGGTTGTTAGCTG
ATACAGTCCGAACACGTTTCTCAGCTCATCCTCGCTAGCCGCGCCGGGCT
TATCGATTTTGTTGCCCAATATGAGCACGGGGCAGTTGGACAGCGCCTCA
TCCGTGAGCAGCGAATCCAGCTCGTTTTTGCTCTCCTGGAAGCGGCCACG
GTCCCAGGCGTCTATTAAGAAAACGATGGCGTCCACAGCAGGGAAGTAGT
CCTTCCAGACGCGTCGTGCCTGAGTGTGGCCACCCAAGTCGAATGTAGTG
AAGCGCATGTTGCCGATGGACAGCTCCTCGGATGTTGGATGCAGTGTGGG
CACATGCTGCGCCAGCTTATCATCTTTGAGCATGTCGACTGATAACT
BO09043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7073-PA | 582 | sar1-RA | 115..579 | 483..19 | 2325 | 100 | Minus |
CG7073-PB | 468 | sar1-RB | 1..465 | 483..19 | 2325 | 100 | Minus |
CG7073-PD | 582 | sar1-RD | 115..579 | 483..19 | 2325 | 100 | Minus |
CG7073-PC | 582 | sar1-RC | 115..579 | 483..19 | 2325 | 100 | Minus |
CG7073-PE | 582 | sar1-RE | 115..579 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 227..691 | 483..19 | 2325 | 100 | Minus |
Sar1-RC | 1801 | CG7073-RC | 576..1040 | 483..19 | 2325 | 100 | Minus |
Sar1-RD | 1552 | CG7073-RD | 327..791 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 369..132 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 22359835..22359950 | 134..19 | 580 | 100 | Minus |
3R | 32079331 | 3R | 22358563..22358628 | 434..369 | 330 | 100 | Minus |
3R | 32079331 | 3R | 22358443..22358491 | 483..435 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:01:21 has no hits.
BO09043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:15 Download gff for
BO09043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-PA | 115..582 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:59 Download gff for
BO09043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7073-PE | 115..582 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:52 Download gff for
BO09043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 278..746 | 14..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:40:13 Download gff for
BO09043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 327..795 | 14..483 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:40:13 Download gff for
BO09043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22358443..22358491 | 435..483 | 100 | -> | Minus |
3R | 22358563..22358628 | 369..434 | 100 | -> | Minus |
3R | 22359525..22359760 | 133..368 | 100 | -> | Minus |
3R | 22359837..22359954 | 14..132 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:52 Download gff for
BO09043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18184165..18184213 | 435..483 | 100 | -> | Minus |
arm_3R | 18184285..18184350 | 369..434 | 100 | -> | Minus |
arm_3R | 18185247..18185482 | 133..368 | 100 | -> | Minus |
arm_3R | 18185559..18185676 | 14..132 | 98 | | Minus |
BO09043.complete Sequence
499 bp (499 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631364
> BO09043.complete
GAAGTTATCAGTCGACATGCTCAAAGATGATAAGCTGGCGCAGCATGTGC
CCACACTGCATCCAACATCCGAGGAGCTGTCCATCGGCAACATGCGCTTC
ACTACATTCGACTTGGGTGGCCACACTCAGGCACGACGCGTCTGGAAGGA
CTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAATAGACGCCTGGGACC
GTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATTCGCTGCTCACGGAT
GAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGCAACAAAATCGATAA
GCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGTGTTCGGACTGTATC
AGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCGATTTGCCCGGCCGT
CCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGACAGGGCTACGGCGA
GGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAGCTTTCTAGACCAT
BO09043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 582 | CG7073-PE | 115..579 | 17..481 | 2325 | 100 | Plus |
Sar1-RC | 582 | CG7073-PC | 115..579 | 17..481 | 2325 | 100 | Plus |
Sar1-RD | 582 | CG7073-PD | 115..579 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-RE | 1452 | CG7073-RE | 227..691 | 17..481 | 2325 | 100 | Plus |
Sar1-RC | 1801 | CG7073-RC | 576..1040 | 17..481 | 2325 | 100 | Plus |
Sar1-RD | 1552 | CG7073-RD | 327..791 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22359524..22359761 | 131..368 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 22359835..22359950 | 366..481 | 580 | 100 | Plus |
3R | 32079331 | 3R | 22358563..22358628 | 66..131 | 330 | 100 | Plus |
3R | 32079331 | 3R | 22358443..22358491 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:58 has no hits.
BO09043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:48 Download gff for
BO09043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 115..582 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:04 Download gff for
BO09043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 391..859 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:04 Download gff for
BO09043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RA | 278..742 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:49 Download gff for
BO09043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sar1-RD | 391..859 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:08 Download gff for
BO09043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sar1-RD | 327..791 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:08 Download gff for
BO09043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22358443..22358491 | 17..65 | 100 | -> | Plus |
3R | 22358563..22358628 | 66..131 | 100 | -> | Plus |
3R | 22359525..22359760 | 132..367 | 100 | -> | Plus |
3R | 22359837..22359950 | 368..483 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:04 Download gff for
BO09043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18184165..18184213 | 17..65 | 100 | -> | Plus |
arm_3R | 18184285..18184350 | 66..131 | 100 | -> | Plus |
arm_3R | 18185247..18185482 | 132..367 | 100 | -> | Plus |
arm_3R | 18185559..18185672 | 368..483 | 98 | | Plus |
BO09043.pep Sequence
Translation from 16 to 499
> BO09043.pep
MLKDDKLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAV
DAIVFLIDAWDRGRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAAS
EDELRNVFGLYQLTTGKGKVARADLPGRPLELFMCSVLKRQGYGEGFRWL
AQYIDASFLDH
BO09043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sar1-PE | 193 | CG7073-PE | 39..193 | 1..155 | 819 | 100 | Plus |
Sar1-PC | 193 | CG7073-PC | 39..193 | 1..155 | 819 | 100 | Plus |
Sar1-PD | 193 | CG7073-PD | 39..193 | 1..155 | 819 | 100 | Plus |
Sar1-PA | 193 | CG7073-PA | 39..193 | 1..155 | 819 | 100 | Plus |
Arl1-PA | 180 | CG6025-PA | 45..178 | 11..156 | 201 | 29.5 | Plus |