Clone BO09046 Report

Search the DGRC for BO09046

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG10625-RA
Protein status:BO09046.pep: validated full length
Sequenced Size:838

Clone Sequence Records

BO09046.3prime Sequence

780 bp (778 high quality bases) assembled on 2006-01-10

> BO09046.3prime
ATGGTCTAGAAAGCTTGCATAGTGATAGCCGGGACCTTTGGCCGGTTGGT
TTGGTGGCAGATAGCCGGGTGTCTCCTTGTCCGAGTAACGAGGATCGTTG
GGAGAGGGTCCTGGTGGGCCGGGACGAGTGGGGCCTGGTGGACCGGGCCG
AGTGGGGCCTGGTGGGCCAGGACGAGTGGGGCCTGGTGGTCCTGGTGGTC
CGGGACGAGTGGGGCCTGGTGGTCCTGGTGGTCCGGGACGAGTGGGGCCT
GTTGGTCCGGGGGGTCCGGGAGGTCCGTAGGGCCCAGGACGAGTGGGTCC
AGGTGGGCCGGGTGGTCCCGGTGGTCCCGGTGGTCCGAAAGGTCCAGGCT
TAGTGGGTCCCTTGGGTCCGGGAGGTCCAGGTGGTCCGGGTGGTCCAGGT
GGGCCGGGGGGTCCGTTGGGTCCATTGGGTCCCTTGGGGCCGCCGGGTCC
TTTAGGTCCGCCTGGGCCGCCGGGGCCTACGCCGCCGCCGTCTCCCTTGC
CGCCATTTCCGCCGAATCCTCCCTCGGGTCCAACAACGTGGACATATGGG
GGTGCCGGTGGTCCAGTGGGGCCTTCAACGTGAACATATTTGCCCGAATC
ATCGTGATAATACCGACCATCGTTAATACCGTTATAGCGTCCGCCATTGC
CATTATATTTACCGTTATTTGTGTCAATGTTTGACGAATAGTACTGACGG
TTCGTTGTCTTTTGGTCGTCAATGTCGAGAATTAGACGACGGTTCTGCTC
ATCGAACTTAGCAGAGTAGACGCATTGCAA

BO09046.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-PA 807 CG10625-RA 43..804 780..19 3810 100 Minus
CG10625-PD 807 CG10625-RD 43..804 780..19 3810 100 Minus
CG10625-PC 2049 CG10625-RC 1397..2046 668..19 3250 100 Minus
CG10625-PB 2049 CG10625-RB 1397..2046 668..19 3250 100 Minus
CG10625-PC 2049 CG10625-RC 43..156 780..667 570 100 Minus
CG10625-PB 2049 CG10625-RB 43..156 780..667 570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 2428 CG10625-RD 395..1156 780..19 3810 100 Minus
CG10625-RA 2212 CG10625-RA 179..940 780..19 3810 100 Minus
CG10625-RJ 3171 CG10625-RJ 395..1133 780..42 3695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5540619..5540887 110..378 1345 100 Plus
3L 28110227 3L 5541078..5541268 440..630 955 100 Plus
3L 28110227 3L 5544968..5545083 665..780 565 99.1 Plus
3L 28110227 3L 5540635..5540780 102..238 380 85.6 Plus
3L 28110227 3L 5540619..5540747 134..271 370 86.2 Plus
3L 28110227 3L 5540491..5540563 42..114 365 100 Plus
3L 28110227 3L 5541332..5541372 628..668 205 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:05:29 has no hits.

BO09046.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:19 Download gff for BO09046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 45..807 16..778 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:05 Download gff for BO09046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 45..807 16..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:24 Download gff for BO09046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 181..940 19..778 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:37 Download gff for BO09046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 181..940 19..778 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:37 Download gff for BO09046.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5541079..5541267 441..629 100 <- Plus
3L 5541334..5541372 630..668 100 <- Plus
3L 5544972..5545081 669..778 100   Plus
3L 5540226..5540248 19..41 100 <- Plus
3L 5540491..5540559 42..110 100 <- Plus
3L 5540620..5540886 111..377 100 <- Plus
3L 5540952..5541014 378..440 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:24 Download gff for BO09046.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5533326..5533348 19..41 100 <- Plus
arm_3L 5533591..5533659 42..110 100 <- Plus
arm_3L 5533720..5533986 111..377 100 <- Plus
arm_3L 5534052..5534114 378..440 100 <- Plus
arm_3L 5534179..5534367 441..629 100 <- Plus
arm_3L 5534434..5534472 630..668 100 <- Plus
arm_3L 5538072..5538181 669..778 100   Plus

BO09046.5prime Sequence

836 bp (779 high quality bases) assembled on 2006-01-10

> BO09046.5prime
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATGCAAGCTTTCTAGACC

BO09046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-PA 807 CG10625-RA 1..804 17..820 4020 100 Plus
CG10625-PD 807 CG10625-RD 1..804 17..820 4020 100 Plus
CG10625-PC 2049 CG10625-RC 1397..2046 171..820 3250 100 Plus
CG10625-PB 2049 CG10625-RB 1397..2046 171..820 3250 100 Plus
CG10625-PC 2049 CG10625-RC 1..156 17..172 780 100 Plus
CG10625-PB 2049 CG10625-RB 1..156 17..172 780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 2428 CG10625-RD 353..1156 17..820 4020 100 Plus
CG10625-RA 2212 CG10625-RA 137..940 17..820 4020 100 Plus
CG10625-RJ 3171 CG10625-RJ 353..1133 17..797 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5540619..5540887 729..461 1345 100 Minus
3L 28110227 3L 5541078..5541268 399..209 955 100 Minus
3L 28110227 3L 5544968..5545102 174..40 660 99.3 Minus
3L 28110227 3L 5540635..5540780 737..601 380 85.6 Minus
3L 28110227 3L 5540619..5540747 705..568 370 86.2 Minus
3L 28110227 3L 5540491..5540563 797..725 365 100 Minus
3L 28110227 3L 5541332..5541372 211..171 205 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:21:17 has no hits.

BO09046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:20 Download gff for BO09046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:07 Download gff for BO09046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:34 Download gff for BO09046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..940 17..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:33 Download gff for BO09046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..940 17..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:33 Download gff for BO09046.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5540226..5540248 798..820 100 <- Minus
3L 5540491..5540559 729..797 100 <- Minus
3L 5540620..5540886 462..728 100 <- Minus
3L 5540952..5541014 399..461 100 <- Minus
3L 5541079..5541267 210..398 100 <- Minus
3L 5541334..5541372 171..209 100 <- Minus
3L 5544972..5545101 41..170 100 <- Minus
3L 5550784..5550807 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:34 Download gff for BO09046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5533326..5533348 798..820 100 <- Minus
arm_3L 5533591..5533659 729..797 100 <- Minus
arm_3L 5533720..5533986 462..728 100 <- Minus
arm_3L 5534052..5534114 399..461 100 <- Minus
arm_3L 5534179..5534367 210..398 100 <- Minus
arm_3L 5534434..5534472 171..209 100 <- Minus
arm_3L 5538072..5538201 41..170 100 <- Minus
arm_3L 5543884..5543907 17..40 100   Minus

BO09046.complete Sequence

838 bp (838 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631365

> BO09046.complete
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATGCAAGCTTTCTAGACCAT

BO09046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 807 CG10625-PD 1..804 17..820 4020 100 Plus
CG10625-RA 807 CG10625-PA 1..804 17..820 4020 100 Plus
CG10625-RJ 2259 CG10625-PJ 1..781 17..797 3905 100 Plus
CG10625-RD 807 CG10625-PD 552..697 601..737 380 85.6 Plus
CG10625-RD 807 CG10625-PD 585..721 568..713 380 85.6 Plus
CG10625-RA 807 CG10625-PA 552..697 601..737 380 85.6 Plus
CG10625-RA 807 CG10625-PA 585..721 568..713 380 85.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 2428 CG10625-RD 353..1156 17..820 4020 100 Plus
CG10625-RA 2212 CG10625-RA 137..940 17..820 4020 100 Plus
CG10625-RJ 3171 CG10625-RJ 353..1133 17..797 3905 100 Plus
CG10625-RD 2428 CG10625-RD 904..1049 601..737 380 85.6 Plus
CG10625-RD 2428 CG10625-RD 937..1073 568..713 380 85.6 Plus
CG10625-RA 2212 CG10625-RA 688..833 601..737 380 85.6 Plus
CG10625-RA 2212 CG10625-RA 721..857 568..713 380 85.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5540619..5540887 729..461 1345 100 Minus
3L 28110227 3L 5541078..5541268 399..209 955 100 Minus
3L 28110227 3L 5544968..5545102 174..40 660 99.3 Minus
3L 28110227 3L 5540635..5540780 737..601 380 85.6 Minus
3L 28110227 3L 5540619..5540747 705..568 370 86.2 Minus
3L 28110227 3L 5540491..5540563 797..725 365 100 Minus
3L 28110227 3L 5541332..5541372 211..171 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:33:12 has no hits.

BO09046.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:45 Download gff for BO09046.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RB 1..158 17..175 98 <- Plus
CG10625-RB 1402..2049 176..823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:24 Download gff for BO09046.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 135..938 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:28 Download gff for BO09046.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..940 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:46 Download gff for BO09046.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RB 135..292 17..175 98 <- Plus
CG10625-RB 1536..2180 176..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:25 Download gff for BO09046.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..940 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:25 Download gff for BO09046.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5540620..5540886 462..728 100 <- Minus
3L 5540952..5541014 399..461 100 <- Minus
3L 5541079..5541267 210..398 100 <- Minus
3L 5541334..5541372 171..209 100 <- Minus
3L 5544972..5545101 41..170 100 <- Minus
3L 5550784..5550807 17..40 100   Minus
3L 5540223..5540248 798..822 92 <- Minus
3L 5540491..5540559 729..797 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:28 Download gff for BO09046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5534179..5534367 210..398 100 <- Minus
arm_3L 5534434..5534472 171..209 100 <- Minus
arm_3L 5538072..5538201 41..170 100 <- Minus
arm_3L 5543884..5543907 17..40 100   Minus
arm_3L 5533323..5533348 798..822 92 <- Minus
arm_3L 5533591..5533659 729..797 100 <- Minus
arm_3L 5533720..5533986 462..728 100 <- Minus
arm_3L 5534052..5534114 399..461 100 <- Minus

BO09046.pep Sequence

Translation from 16 to 838

> BO09046.pep
MARAALCMAVACIFLQCVYSAKFDEQNRRLILDIDDQKTTNRQYYSSNID
TNNGKYNGNGGRYNGINDGRYYHDDSGKYVHVEGPTGPPAPPYVHVVGPE
GGFGGNGGKGDGGGVGPGGPGGPKGPGGPKGPNGPNGPPGPPGPPGPPGP
PGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG
PPGPTRPGPPGPPGPTRPGPPGPTRPGPPGPTRPGPPGPSPNDPRYSDKE
TPGYLPPNQPAKGPGYHYASFLDH

BO09046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-PD 268 CG10625-PD 1..268 1..268 1602 100 Plus
CG10625-PA 268 CG10625-PA 1..268 1..268 1602 100 Plus
CG10625-PJ 752 CG10625-PJ 1..262 1..262 1557 99.6 Plus
CG10625-PI 766 CG10625-PI 1..262 1..262 1557 99.6 Plus
CG10625-PB 682 CG10625-PB 466..682 52..268 1333 99.5 Plus
CG10625-PJ 752 CG10625-PJ 84..172 169..265 157 44.9 Plus
CG10625-PI 766 CG10625-PI 84..172 169..265 157 44.9 Plus