Clone Sequence Records
BO09046.3prime Sequence
780 bp (778 high quality bases) assembled on 2006-01-10
> BO09046.3prime
ATGGTCTAGAAAGCTTGCATAGTGATAGCCGGGACCTTTGGCCGGTTGGT
TTGGTGGCAGATAGCCGGGTGTCTCCTTGTCCGAGTAACGAGGATCGTTG
GGAGAGGGTCCTGGTGGGCCGGGACGAGTGGGGCCTGGTGGACCGGGCCG
AGTGGGGCCTGGTGGGCCAGGACGAGTGGGGCCTGGTGGTCCTGGTGGTC
CGGGACGAGTGGGGCCTGGTGGTCCTGGTGGTCCGGGACGAGTGGGGCCT
GTTGGTCCGGGGGGTCCGGGAGGTCCGTAGGGCCCAGGACGAGTGGGTCC
AGGTGGGCCGGGTGGTCCCGGTGGTCCCGGTGGTCCGAAAGGTCCAGGCT
TAGTGGGTCCCTTGGGTCCGGGAGGTCCAGGTGGTCCGGGTGGTCCAGGT
GGGCCGGGGGGTCCGTTGGGTCCATTGGGTCCCTTGGGGCCGCCGGGTCC
TTTAGGTCCGCCTGGGCCGCCGGGGCCTACGCCGCCGCCGTCTCCCTTGC
CGCCATTTCCGCCGAATCCTCCCTCGGGTCCAACAACGTGGACATATGGG
GGTGCCGGTGGTCCAGTGGGGCCTTCAACGTGAACATATTTGCCCGAATC
ATCGTGATAATACCGACCATCGTTAATACCGTTATAGCGTCCGCCATTGC
CATTATATTTACCGTTATTTGTGTCAATGTTTGACGAATAGTACTGACGG
TTCGTTGTCTTTTGGTCGTCAATGTCGAGAATTAGACGACGGTTCTGCTC
ATCGAACTTAGCAGAGTAGACGCATTGCAA
BO09046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-PA | 807 | CG10625-RA | 43..804 | 780..19 | 3810 | 100 | Minus |
CG10625-PD | 807 | CG10625-RD | 43..804 | 780..19 | 3810 | 100 | Minus |
CG10625-PC | 2049 | CG10625-RC | 1397..2046 | 668..19 | 3250 | 100 | Minus |
CG10625-PB | 2049 | CG10625-RB | 1397..2046 | 668..19 | 3250 | 100 | Minus |
CG10625-PC | 2049 | CG10625-RC | 43..156 | 780..667 | 570 | 100 | Minus |
CG10625-PB | 2049 | CG10625-RB | 43..156 | 780..667 | 570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 2428 | CG10625-RD | 395..1156 | 780..19 | 3810 | 100 | Minus |
CG10625-RA | 2212 | CG10625-RA | 179..940 | 780..19 | 3810 | 100 | Minus |
CG10625-RJ | 3171 | CG10625-RJ | 395..1133 | 780..42 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5540619..5540887 | 110..378 | 1345 | 100 | Plus |
3L | 28110227 | 3L | 5541078..5541268 | 440..630 | 955 | 100 | Plus |
3L | 28110227 | 3L | 5544968..5545083 | 665..780 | 565 | 99.1 | Plus |
3L | 28110227 | 3L | 5540635..5540780 | 102..238 | 380 | 85.6 | Plus |
3L | 28110227 | 3L | 5540619..5540747 | 134..271 | 370 | 86.2 | Plus |
3L | 28110227 | 3L | 5540491..5540563 | 42..114 | 365 | 100 | Plus |
3L | 28110227 | 3L | 5541332..5541372 | 628..668 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:05:29 has no hits.
BO09046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:19 Download gff for
BO09046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 45..807 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:05 Download gff for
BO09046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 45..807 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:49:24 Download gff for
BO09046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 181..940 | 19..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:37 Download gff for
BO09046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 181..940 | 19..778 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:37 Download gff for
BO09046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5541079..5541267 | 441..629 | 100 | <- | Plus |
3L | 5541334..5541372 | 630..668 | 100 | <- | Plus |
3L | 5544972..5545081 | 669..778 | 100 | | Plus |
3L | 5540226..5540248 | 19..41 | 100 | <- | Plus |
3L | 5540491..5540559 | 42..110 | 100 | <- | Plus |
3L | 5540620..5540886 | 111..377 | 100 | <- | Plus |
3L | 5540952..5541014 | 378..440 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:49:24 Download gff for
BO09046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5533326..5533348 | 19..41 | 100 | <- | Plus |
arm_3L | 5533591..5533659 | 42..110 | 100 | <- | Plus |
arm_3L | 5533720..5533986 | 111..377 | 100 | <- | Plus |
arm_3L | 5534052..5534114 | 378..440 | 100 | <- | Plus |
arm_3L | 5534179..5534367 | 441..629 | 100 | <- | Plus |
arm_3L | 5534434..5534472 | 630..668 | 100 | <- | Plus |
arm_3L | 5538072..5538181 | 669..778 | 100 | | Plus |
BO09046.5prime Sequence
836 bp (779 high quality bases) assembled on 2006-01-10
> BO09046.5prime
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATGCAAGCTTTCTAGACC
BO09046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-PA | 807 | CG10625-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG10625-PD | 807 | CG10625-RD | 1..804 | 17..820 | 4020 | 100 | Plus |
CG10625-PC | 2049 | CG10625-RC | 1397..2046 | 171..820 | 3250 | 100 | Plus |
CG10625-PB | 2049 | CG10625-RB | 1397..2046 | 171..820 | 3250 | 100 | Plus |
CG10625-PC | 2049 | CG10625-RC | 1..156 | 17..172 | 780 | 100 | Plus |
CG10625-PB | 2049 | CG10625-RB | 1..156 | 17..172 | 780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 2428 | CG10625-RD | 353..1156 | 17..820 | 4020 | 100 | Plus |
CG10625-RA | 2212 | CG10625-RA | 137..940 | 17..820 | 4020 | 100 | Plus |
CG10625-RJ | 3171 | CG10625-RJ | 353..1133 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5540619..5540887 | 729..461 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 5541078..5541268 | 399..209 | 955 | 100 | Minus |
3L | 28110227 | 3L | 5544968..5545102 | 174..40 | 660 | 99.3 | Minus |
3L | 28110227 | 3L | 5540635..5540780 | 737..601 | 380 | 85.6 | Minus |
3L | 28110227 | 3L | 5540619..5540747 | 705..568 | 370 | 86.2 | Minus |
3L | 28110227 | 3L | 5540491..5540563 | 797..725 | 365 | 100 | Minus |
3L | 28110227 | 3L | 5541332..5541372 | 211..171 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:21:17 has no hits.
BO09046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:20 Download gff for
BO09046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:07 Download gff for
BO09046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:34 Download gff for
BO09046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..940 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:33 Download gff for
BO09046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..940 | 17..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:33 Download gff for
BO09046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5540226..5540248 | 798..820 | 100 | <- | Minus |
3L | 5540491..5540559 | 729..797 | 100 | <- | Minus |
3L | 5540620..5540886 | 462..728 | 100 | <- | Minus |
3L | 5540952..5541014 | 399..461 | 100 | <- | Minus |
3L | 5541079..5541267 | 210..398 | 100 | <- | Minus |
3L | 5541334..5541372 | 171..209 | 100 | <- | Minus |
3L | 5544972..5545101 | 41..170 | 100 | <- | Minus |
3L | 5550784..5550807 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:34 Download gff for
BO09046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5533326..5533348 | 798..820 | 100 | <- | Minus |
arm_3L | 5533591..5533659 | 729..797 | 100 | <- | Minus |
arm_3L | 5533720..5533986 | 462..728 | 100 | <- | Minus |
arm_3L | 5534052..5534114 | 399..461 | 100 | <- | Minus |
arm_3L | 5534179..5534367 | 210..398 | 100 | <- | Minus |
arm_3L | 5534434..5534472 | 171..209 | 100 | <- | Minus |
arm_3L | 5538072..5538201 | 41..170 | 100 | <- | Minus |
arm_3L | 5543884..5543907 | 17..40 | 100 | | Minus |
BO09046.complete Sequence
838 bp (838 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631365
> BO09046.complete
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATGCAAGCTTTCTAGACCAT
BO09046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 807 | CG10625-PD | 1..804 | 17..820 | 4020 | 100 | Plus |
CG10625-RA | 807 | CG10625-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG10625-RJ | 2259 | CG10625-PJ | 1..781 | 17..797 | 3905 | 100 | Plus |
CG10625-RD | 807 | CG10625-PD | 552..697 | 601..737 | 380 | 85.6 | Plus |
CG10625-RD | 807 | CG10625-PD | 585..721 | 568..713 | 380 | 85.6 | Plus |
CG10625-RA | 807 | CG10625-PA | 552..697 | 601..737 | 380 | 85.6 | Plus |
CG10625-RA | 807 | CG10625-PA | 585..721 | 568..713 | 380 | 85.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 2428 | CG10625-RD | 353..1156 | 17..820 | 4020 | 100 | Plus |
CG10625-RA | 2212 | CG10625-RA | 137..940 | 17..820 | 4020 | 100 | Plus |
CG10625-RJ | 3171 | CG10625-RJ | 353..1133 | 17..797 | 3905 | 100 | Plus |
CG10625-RD | 2428 | CG10625-RD | 904..1049 | 601..737 | 380 | 85.6 | Plus |
CG10625-RD | 2428 | CG10625-RD | 937..1073 | 568..713 | 380 | 85.6 | Plus |
CG10625-RA | 2212 | CG10625-RA | 688..833 | 601..737 | 380 | 85.6 | Plus |
CG10625-RA | 2212 | CG10625-RA | 721..857 | 568..713 | 380 | 85.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5540619..5540887 | 729..461 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 5541078..5541268 | 399..209 | 955 | 100 | Minus |
3L | 28110227 | 3L | 5544968..5545102 | 174..40 | 660 | 99.3 | Minus |
3L | 28110227 | 3L | 5540635..5540780 | 737..601 | 380 | 85.6 | Minus |
3L | 28110227 | 3L | 5540619..5540747 | 705..568 | 370 | 86.2 | Minus |
3L | 28110227 | 3L | 5540491..5540563 | 797..725 | 365 | 100 | Minus |
3L | 28110227 | 3L | 5541332..5541372 | 211..171 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:33:12 has no hits.
BO09046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:45 Download gff for
BO09046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RB | 1..158 | 17..175 | 98 | <- | Plus |
CG10625-RB | 1402..2049 | 176..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:24 Download gff for
BO09046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 135..938 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:28 Download gff for
BO09046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..940 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:46 Download gff for
BO09046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RB | 135..292 | 17..175 | 98 | <- | Plus |
CG10625-RB | 1536..2180 | 176..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:25 Download gff for
BO09046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..940 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:25 Download gff for
BO09046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5540620..5540886 | 462..728 | 100 | <- | Minus |
3L | 5540952..5541014 | 399..461 | 100 | <- | Minus |
3L | 5541079..5541267 | 210..398 | 100 | <- | Minus |
3L | 5541334..5541372 | 171..209 | 100 | <- | Minus |
3L | 5544972..5545101 | 41..170 | 100 | <- | Minus |
3L | 5550784..5550807 | 17..40 | 100 | | Minus |
3L | 5540223..5540248 | 798..822 | 92 | <- | Minus |
3L | 5540491..5540559 | 729..797 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:28 Download gff for
BO09046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5534179..5534367 | 210..398 | 100 | <- | Minus |
arm_3L | 5534434..5534472 | 171..209 | 100 | <- | Minus |
arm_3L | 5538072..5538201 | 41..170 | 100 | <- | Minus |
arm_3L | 5543884..5543907 | 17..40 | 100 | | Minus |
arm_3L | 5533323..5533348 | 798..822 | 92 | <- | Minus |
arm_3L | 5533591..5533659 | 729..797 | 100 | <- | Minus |
arm_3L | 5533720..5533986 | 462..728 | 100 | <- | Minus |
arm_3L | 5534052..5534114 | 399..461 | 100 | <- | Minus |
BO09046.pep Sequence
Translation from 16 to 838
> BO09046.pep
MARAALCMAVACIFLQCVYSAKFDEQNRRLILDIDDQKTTNRQYYSSNID
TNNGKYNGNGGRYNGINDGRYYHDDSGKYVHVEGPTGPPAPPYVHVVGPE
GGFGGNGGKGDGGGVGPGGPGGPKGPGGPKGPNGPNGPPGPPGPPGPPGP
PGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG
PPGPTRPGPPGPPGPTRPGPPGPTRPGPPGPTRPGPPGPSPNDPRYSDKE
TPGYLPPNQPAKGPGYHYASFLDH
BO09046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-PD | 268 | CG10625-PD | 1..268 | 1..268 | 1602 | 100 | Plus |
CG10625-PA | 268 | CG10625-PA | 1..268 | 1..268 | 1602 | 100 | Plus |
CG10625-PJ | 752 | CG10625-PJ | 1..262 | 1..262 | 1557 | 99.6 | Plus |
CG10625-PI | 766 | CG10625-PI | 1..262 | 1..262 | 1557 | 99.6 | Plus |
CG10625-PB | 682 | CG10625-PB | 466..682 | 52..268 | 1333 | 99.5 | Plus |
CG10625-PJ | 752 | CG10625-PJ | 84..172 | 169..265 | 157 | 44.9 | Plus |
CG10625-PI | 766 | CG10625-PI | 84..172 | 169..265 | 157 | 44.9 | Plus |