Clone BO09048 Report

Search the DGRC for BO09048

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG3209-RB
Protein status:BO09048.pep: validated full length
Sequenced Size:1408

Clone Sequence Records

BO09048.3prime Sequence

882 bp (842 high quality bases) assembled on 2006-01-10

> BO09048.3prime
ATGGTCTAGAAAGCTTGCGGTGGAGTCCGACTTCAGCCGATTGGCAAACT
CGACTTGCTGGATCTCCCTCCACTCCTTCTTTGGCTTCATGCGCTTCAGC
TGCCCGTCCCAGACCAGATCAATCAAACCTCCCTGCTTCGCGATGACACT
CTTCACGCGGTTCGCGAAGTCGATCGCCGACTCTCCCTCCTGCCTGTACA
TCGGCGGCAGGTACCACACATCGCACACGATGGCCCACGAGGTCATCATC
ATGTACAGATACTGCATCATCGAGTACTTCGCGCTGTTCCAGAAGGCGTC
GCCGAACCTCGGATCGTACTTAATGGCCACCGGGTAGATGACGCCGCCAA
CTTCGAAGCTGCCCTTCTTGAACTGCATGACCGACGTGTTGTTGATGCAA
GTTCCCTCCGGGAAGATAAGGATCGGTGGGTTGTTCGGATCAGACACGTG
CTGCTTCAGTCGCTCGGCCACCAAATGACGATCCTTGGCCTCGCCGCGCT
CAAACCAAATGTGGGGAGATGCGCGGGCCAGAGCTCGTTGCAGCACCCCC
AAAAAGCCGCCATGGCGTTGGCCAATCAGCGAGTAGGTCGAGTCGCACAT
CAGGACCAGCACATCAATGGGACTGGTGTGATTGGCAACACAAATACCGG
ATGACGGGCGATTATCCTCATTGTGGTAGGTGATAACCGCCGATATAGCG
CTGGACAAAACGCCGAAGCACATGCCGAGCACCTTGTGCACGAGATCCCG
CTTGAAGGGCCCATCCTTCAAGTATCCCACTGCAGCCGTGCAGACTGTTA
ACCACACTACACCAACGAAGCATACCAATACCCGGAGGGGCATCAAGATG
ACGTAACGGATGAAGAAACCGAACACCCAGAT

BO09048.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-PB 1377 CG3209-RB 511..1374 882..19 4245 99.6 Minus
CG3209-PA 1614 CG3209-RA 820..1611 810..19 3960 100 Minus
CG3209-PA 1614 CG3209-RA 511..584 882..809 295 95.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1660 CG3209-RB 661..1524 882..19 4275 99.7 Minus
CG3209-RD 1985 CG3209-RD 970..1761 810..19 3960 100 Minus
CG3209-RC 1751 CG3209-RC 958..1527 588..19 2820 99.6 Minus
CG3209-RD 1985 CG3209-RD 661..734 882..809 325 95.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24073028..24073328 319..19 1505 100 Minus
2R 25286936 2R 24072704..24072963 577..318 1300 100 Minus
2R 25286936 2R 24071991..24072224 810..577 1170 100 Minus
2R 25286936 2R 24070171..24070244 882..809 325 95.9 Minus
X 23542271 X 20825153..20825296 426..283 240 77.8 Minus
Blast to na_te.dros performed on 2015-02-10 23:08:42 has no hits.

BO09048.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:23 Download gff for BO09048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 511..1377 15..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:11 Download gff for BO09048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 511..1377 15..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:47 Download gff for BO09048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 661..1530 11..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:24:57 Download gff for BO09048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 661..1530 11..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:24:57 Download gff for BO09048.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24070171..24070242 811..882 95 -> Minus
2R 24071991..24072224 577..810 100 -> Minus
2R 24072705..24072961 320..576 100 -> Minus
2R 24073028..24073334 11..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:47 Download gff for BO09048.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19957694..19957765 811..882 95 -> Minus
arm_2R 19959514..19959747 577..810 100 -> Minus
arm_2R 19960228..19960484 320..576 100 -> Minus
arm_2R 19960551..19960857 11..319 98   Minus

BO09048.5prime Sequence

913 bp (833 high quality bases) assembled on 2006-01-10

> BO09048.5prime
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGTCCTGATGTGCGACTCGACCTACTCGCTGATTGGCCAACGCCATGGC
GGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACAT
TTGGTTTGAGCGC

BO09048.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-PB 1377 CG3209-RB 1..897 17..913 4485 100 Plus
CG3209-PA 1614 CG3209-RA 1..584 17..600 2920 100 Plus
CG3209-PA 1614 CG3209-RA 820..1134 599..913 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1660 CG3209-RB 151..1047 17..913 4485 100 Plus
CG3209-RC 1751 CG3209-RC 151..734 17..600 2920 100 Plus
CG3209-RD 1985 CG3209-RD 151..734 17..600 2920 100 Plus
CG3209-RC 1751 CG3209-RC 958..1050 821..913 435 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24069998..24070244 354..600 1235 100 Plus
2R 25286936 2R 24071991..24072224 599..832 1170 100 Plus
2R 25286936 2R 24069737..24069943 150..356 1035 100 Plus
2R 25286936 2R 24069200..24069334 17..151 675 100 Plus
2R 25286936 2R 24072704..24072785 832..913 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:43:13 has no hits.

BO09048.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:24 Download gff for BO09048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 1..897 17..913 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:12 Download gff for BO09048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-PB 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:47 Download gff for BO09048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 146..1047 11..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:09 Download gff for BO09048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 146..1047 11..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:09 Download gff for BO09048.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24071991..24072224 599..832 100 -> Plus
2R 24072705..24072785 833..913 100   Plus
2R 24069195..24069334 11..151 97 -> Plus
2R 24069739..24069942 152..355 100 -> Plus
2R 24070000..24070242 356..598 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:47 Download gff for BO09048.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19957523..19957765 356..598 100 -> Plus
arm_2R 19956718..19956857 11..151 97 -> Plus
arm_2R 19957262..19957465 152..355 100 -> Plus
arm_2R 19959514..19959747 599..832 100 -> Plus
arm_2R 19960228..19960308 833..913 100   Plus

BO09048.complete Sequence

1408 bp (1408 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631366

> BO09048.complete
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGTCCTGATGTGCGACTCGACCTACTCGCTGATTGGCCAACGCCATGGC
GGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACAT
TTGGTTTGAGCGCGGCGAGGCCAAGGATCGTCATTTGGTGGCCGAGCGAC
TGAAGCAGCACGTGTCTGATCCGAACAACCCACCGATCCTTATCTTCCCG
GAGGGAACTTGCATCAACAACACGTCGGTCATGCAGTTCAAGAAGGGCAG
CTTCGAAGTTGGCGGCGTCATCTACCCGGTGGCCATTAAGTACGATCCGA
GGTTCGGCGACGCCTTCTGGAACAGCGCGAAGTACTCGATGATGCAGTAT
CTGTACATGATGATGACCTCGTGGGCCATCGTGTGCGATGTGTGGTACCT
GCCGCCGATGTACAGGCAGGAGGGAGAGTCGGCGATCGACTTCGCGAACC
GCGTGAAGAGTGTCATCGCGAAGCAGGGAGGTTTGATTGATCTGGTCTGG
GACGGGCAGCTGAAGCGCATGAAGCCAAAGAAGGAGTGGAGGGAGATCCA
GCAAGTCGAGTTTGCCAATCGGCTGAAGTCGGACTCCACCGCAAGCTTTC
TAGACCAT

BO09048.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1377 CG3209-PB 1..1374 17..1390 6870 100 Plus
CG3209-RD 1614 CG3209-PD 820..1611 599..1390 3960 100 Plus
CG3209-RD 1614 CG3209-PD 1..584 17..600 2920 100 Plus
CG3209-RC 1380 CG3209-PC 1..584 17..600 2920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-RB 1660 CG3209-RB 151..1524 17..1390 6870 100 Plus
CG3209-RD 1985 CG3209-RD 970..1761 599..1390 3960 100 Plus
CG3209-RD 1985 CG3209-RD 151..734 17..600 2920 100 Plus
CG3209-RC 1751 CG3209-RC 151..734 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24073028..24073328 1090..1390 1505 100 Plus
2R 25286936 2R 24072704..24072963 832..1091 1300 100 Plus
2R 25286936 2R 24069998..24070244 354..600 1235 100 Plus
2R 25286936 2R 24071991..24072224 599..832 1170 100 Plus
2R 25286936 2R 24069737..24069943 150..356 1035 100 Plus
2R 25286936 2R 24069200..24069334 17..151 675 100 Plus
X 23542271 X 20825153..20825296 983..1126 240 77.8 Plus
Blast to na_te.dros performed on 2014-11-27 16:50:42 has no hits.

BO09048.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:47 Download gff for BO09048.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 1..1377 17..1394 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:41 Download gff for BO09048.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 286..1670 11..1398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:24 Download gff for BO09048.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 151..1524 17..1392 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:47 Download gff for BO09048.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 286..1670 11..1398 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:25 Download gff for BO09048.complete
Subject Subject Range Query Range Percent Splice Strand
CG3209-RB 151..1524 17..1392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:25 Download gff for BO09048.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24071991..24072224 599..832 100 -> Plus
2R 24072705..24072961 833..1089 100 -> Plus
2R 24070000..24070242 356..598 100 -> Plus
2R 24069200..24069334 17..151 100 -> Plus
2R 24069739..24069942 152..355 100 -> Plus
2R 24073028..24073328 1090..1392 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:24 Download gff for BO09048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19956723..19956857 17..151 100 -> Plus
arm_2R 19957262..19957465 152..355 100 -> Plus
arm_2R 19957523..19957765 356..598 100 -> Plus
arm_2R 19959514..19959747 599..832 100 -> Plus
arm_2R 19960228..19960484 833..1089 100 -> Plus
arm_2R 19960551..19960851 1090..1392 99   Plus

BO09048.pep Sequence

Translation from 16 to 1408

> BO09048.pep
MIAVLLDIFWIPIGGFLSFLIFISAINKSIGVRKAYVNLLLRIFEYGRVS
IETASKENQHIQNPKTDDKQGVQLVDDADSKEGTNGATLITRDAVLLPQP
QEPAPEKPVSSTKDEINFDFEKCLDYVKSGVEAIIEDDVTSRFEAEELKS
WNMLTRTNRHYEFISWKITSIWVFGFFIRYVILMPLRVLVCFVGVVWLTV
CTAAVGYLKDGPFKRDLVHKVLGMCFGVLSSAISAVITYHNEDNRPSSGI
CVANHTSPIDVLVLMCDSTYSLIGQRHGGFLGVLQRALARASPHIWFERG
EAKDRHLVAERLKQHVSDPNNPPILIFPEGTCINNTSVMQFKKGSFEVGG
VIYPVAIKYDPRFGDAFWNSAKYSMMQYLYMMMTSWAIVCDVWYLPPMYR
QEGESAIDFANRVKSVIAKQGGLIDLVWDGQLKRMKPKKEWREIQQVEFA
NRLKSDSTASFLDH

BO09048.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3209-PB 458 CG3209-PB 1..458 1..458 2411 100 Plus
CG3209-PC 459 CG3209-PC 1..459 1..458 2133 89.3 Plus
CG3209-PD 537 CG3209-PD 274..537 195..458 1410 100 Plus
CG3209-PD 537 CG3209-PD 1..274 1..273 1138 81.8 Plus
CG3209-PE 380 CG3209-PE 1..195 1..195 1004 99.5 Plus
CG3209-PE 380 CG3209-PE 188..380 263..458 999 96.4 Plus
CG15450-PA 407 CG15450-PA 75..407 113..442 909 47.7 Plus