Clone Sequence Records
BO09048.3prime Sequence
882 bp (842 high quality bases) assembled on 2006-01-10
> BO09048.3prime
ATGGTCTAGAAAGCTTGCGGTGGAGTCCGACTTCAGCCGATTGGCAAACT
CGACTTGCTGGATCTCCCTCCACTCCTTCTTTGGCTTCATGCGCTTCAGC
TGCCCGTCCCAGACCAGATCAATCAAACCTCCCTGCTTCGCGATGACACT
CTTCACGCGGTTCGCGAAGTCGATCGCCGACTCTCCCTCCTGCCTGTACA
TCGGCGGCAGGTACCACACATCGCACACGATGGCCCACGAGGTCATCATC
ATGTACAGATACTGCATCATCGAGTACTTCGCGCTGTTCCAGAAGGCGTC
GCCGAACCTCGGATCGTACTTAATGGCCACCGGGTAGATGACGCCGCCAA
CTTCGAAGCTGCCCTTCTTGAACTGCATGACCGACGTGTTGTTGATGCAA
GTTCCCTCCGGGAAGATAAGGATCGGTGGGTTGTTCGGATCAGACACGTG
CTGCTTCAGTCGCTCGGCCACCAAATGACGATCCTTGGCCTCGCCGCGCT
CAAACCAAATGTGGGGAGATGCGCGGGCCAGAGCTCGTTGCAGCACCCCC
AAAAAGCCGCCATGGCGTTGGCCAATCAGCGAGTAGGTCGAGTCGCACAT
CAGGACCAGCACATCAATGGGACTGGTGTGATTGGCAACACAAATACCGG
ATGACGGGCGATTATCCTCATTGTGGTAGGTGATAACCGCCGATATAGCG
CTGGACAAAACGCCGAAGCACATGCCGAGCACCTTGTGCACGAGATCCCG
CTTGAAGGGCCCATCCTTCAAGTATCCCACTGCAGCCGTGCAGACTGTTA
ACCACACTACACCAACGAAGCATACCAATACCCGGAGGGGCATCAAGATG
ACGTAACGGATGAAGAAACCGAACACCCAGAT
BO09048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-PB | 1377 | CG3209-RB | 511..1374 | 882..19 | 4245 | 99.6 | Minus |
CG3209-PA | 1614 | CG3209-RA | 820..1611 | 810..19 | 3960 | 100 | Minus |
CG3209-PA | 1614 | CG3209-RA | 511..584 | 882..809 | 295 | 95.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1660 | CG3209-RB | 661..1524 | 882..19 | 4275 | 99.7 | Minus |
CG3209-RD | 1985 | CG3209-RD | 970..1761 | 810..19 | 3960 | 100 | Minus |
CG3209-RC | 1751 | CG3209-RC | 958..1527 | 588..19 | 2820 | 99.6 | Minus |
CG3209-RD | 1985 | CG3209-RD | 661..734 | 882..809 | 325 | 95.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24073028..24073328 | 319..19 | 1505 | 100 | Minus |
2R | 25286936 | 2R | 24072704..24072963 | 577..318 | 1300 | 100 | Minus |
2R | 25286936 | 2R | 24071991..24072224 | 810..577 | 1170 | 100 | Minus |
2R | 25286936 | 2R | 24070171..24070244 | 882..809 | 325 | 95.9 | Minus |
X | 23542271 | X | 20825153..20825296 | 426..283 | 240 | 77.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:08:42 has no hits.
BO09048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:23 Download gff for
BO09048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 511..1377 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:11 Download gff for
BO09048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 511..1377 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:47 Download gff for
BO09048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 661..1530 | 11..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:24:57 Download gff for
BO09048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 661..1530 | 11..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:24:57 Download gff for
BO09048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24070171..24070242 | 811..882 | 95 | -> | Minus |
2R | 24071991..24072224 | 577..810 | 100 | -> | Minus |
2R | 24072705..24072961 | 320..576 | 100 | -> | Minus |
2R | 24073028..24073334 | 11..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:47 Download gff for
BO09048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19957694..19957765 | 811..882 | 95 | -> | Minus |
arm_2R | 19959514..19959747 | 577..810 | 100 | -> | Minus |
arm_2R | 19960228..19960484 | 320..576 | 100 | -> | Minus |
arm_2R | 19960551..19960857 | 11..319 | 98 | | Minus |
BO09048.5prime Sequence
913 bp (833 high quality bases) assembled on 2006-01-10
> BO09048.5prime
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGTCCTGATGTGCGACTCGACCTACTCGCTGATTGGCCAACGCCATGGC
GGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACAT
TTGGTTTGAGCGC
BO09048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-PB | 1377 | CG3209-RB | 1..897 | 17..913 | 4485 | 100 | Plus |
CG3209-PA | 1614 | CG3209-RA | 1..584 | 17..600 | 2920 | 100 | Plus |
CG3209-PA | 1614 | CG3209-RA | 820..1134 | 599..913 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1660 | CG3209-RB | 151..1047 | 17..913 | 4485 | 100 | Plus |
CG3209-RC | 1751 | CG3209-RC | 151..734 | 17..600 | 2920 | 100 | Plus |
CG3209-RD | 1985 | CG3209-RD | 151..734 | 17..600 | 2920 | 100 | Plus |
CG3209-RC | 1751 | CG3209-RC | 958..1050 | 821..913 | 435 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24069998..24070244 | 354..600 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 24071991..24072224 | 599..832 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 24069737..24069943 | 150..356 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 24069200..24069334 | 17..151 | 675 | 100 | Plus |
2R | 25286936 | 2R | 24072704..24072785 | 832..913 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:43:13 has no hits.
BO09048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:24 Download gff for
BO09048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:12 Download gff for
BO09048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-PB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:47 Download gff for
BO09048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 146..1047 | 11..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:09 Download gff for
BO09048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 146..1047 | 11..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:09 Download gff for
BO09048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24071991..24072224 | 599..832 | 100 | -> | Plus |
2R | 24072705..24072785 | 833..913 | 100 | | Plus |
2R | 24069195..24069334 | 11..151 | 97 | -> | Plus |
2R | 24069739..24069942 | 152..355 | 100 | -> | Plus |
2R | 24070000..24070242 | 356..598 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:47 Download gff for
BO09048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19957523..19957765 | 356..598 | 100 | -> | Plus |
arm_2R | 19956718..19956857 | 11..151 | 97 | -> | Plus |
arm_2R | 19957262..19957465 | 152..355 | 100 | -> | Plus |
arm_2R | 19959514..19959747 | 599..832 | 100 | -> | Plus |
arm_2R | 19960228..19960308 | 833..913 | 100 | | Plus |
BO09048.complete Sequence
1408 bp (1408 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631366
> BO09048.complete
GAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCC
CCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAA
TCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGA
GTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTC
AAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCC
GATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGT
ACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCA
CAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAG
TCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGC
GGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACG
AGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATC
CGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGT
AGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGC
CCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTT
TTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCG
CCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGC
TGGTCCTGATGTGCGACTCGACCTACTCGCTGATTGGCCAACGCCATGGC
GGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACAT
TTGGTTTGAGCGCGGCGAGGCCAAGGATCGTCATTTGGTGGCCGAGCGAC
TGAAGCAGCACGTGTCTGATCCGAACAACCCACCGATCCTTATCTTCCCG
GAGGGAACTTGCATCAACAACACGTCGGTCATGCAGTTCAAGAAGGGCAG
CTTCGAAGTTGGCGGCGTCATCTACCCGGTGGCCATTAAGTACGATCCGA
GGTTCGGCGACGCCTTCTGGAACAGCGCGAAGTACTCGATGATGCAGTAT
CTGTACATGATGATGACCTCGTGGGCCATCGTGTGCGATGTGTGGTACCT
GCCGCCGATGTACAGGCAGGAGGGAGAGTCGGCGATCGACTTCGCGAACC
GCGTGAAGAGTGTCATCGCGAAGCAGGGAGGTTTGATTGATCTGGTCTGG
GACGGGCAGCTGAAGCGCATGAAGCCAAAGAAGGAGTGGAGGGAGATCCA
GCAAGTCGAGTTTGCCAATCGGCTGAAGTCGGACTCCACCGCAAGCTTTC
TAGACCAT
BO09048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1377 | CG3209-PB | 1..1374 | 17..1390 | 6870 | 100 | Plus |
CG3209-RD | 1614 | CG3209-PD | 820..1611 | 599..1390 | 3960 | 100 | Plus |
CG3209-RD | 1614 | CG3209-PD | 1..584 | 17..600 | 2920 | 100 | Plus |
CG3209-RC | 1380 | CG3209-PC | 1..584 | 17..600 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-RB | 1660 | CG3209-RB | 151..1524 | 17..1390 | 6870 | 100 | Plus |
CG3209-RD | 1985 | CG3209-RD | 970..1761 | 599..1390 | 3960 | 100 | Plus |
CG3209-RD | 1985 | CG3209-RD | 151..734 | 17..600 | 2920 | 100 | Plus |
CG3209-RC | 1751 | CG3209-RC | 151..734 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24073028..24073328 | 1090..1390 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 24072704..24072963 | 832..1091 | 1300 | 100 | Plus |
2R | 25286936 | 2R | 24069998..24070244 | 354..600 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 24071991..24072224 | 599..832 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 24069737..24069943 | 150..356 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 24069200..24069334 | 17..151 | 675 | 100 | Plus |
X | 23542271 | X | 20825153..20825296 | 983..1126 | 240 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:50:42 has no hits.
BO09048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:47 Download gff for
BO09048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 1..1377 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:41 Download gff for
BO09048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 286..1670 | 11..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:24 Download gff for
BO09048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 151..1524 | 17..1392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:47 Download gff for
BO09048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 286..1670 | 11..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:25 Download gff for
BO09048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3209-RB | 151..1524 | 17..1392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:25 Download gff for
BO09048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24071991..24072224 | 599..832 | 100 | -> | Plus |
2R | 24072705..24072961 | 833..1089 | 100 | -> | Plus |
2R | 24070000..24070242 | 356..598 | 100 | -> | Plus |
2R | 24069200..24069334 | 17..151 | 100 | -> | Plus |
2R | 24069739..24069942 | 152..355 | 100 | -> | Plus |
2R | 24073028..24073328 | 1090..1392 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:24 Download gff for
BO09048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19956723..19956857 | 17..151 | 100 | -> | Plus |
arm_2R | 19957262..19957465 | 152..355 | 100 | -> | Plus |
arm_2R | 19957523..19957765 | 356..598 | 100 | -> | Plus |
arm_2R | 19959514..19959747 | 599..832 | 100 | -> | Plus |
arm_2R | 19960228..19960484 | 833..1089 | 100 | -> | Plus |
arm_2R | 19960551..19960851 | 1090..1392 | 99 | | Plus |
BO09048.pep Sequence
Translation from 16 to 1408
> BO09048.pep
MIAVLLDIFWIPIGGFLSFLIFISAINKSIGVRKAYVNLLLRIFEYGRVS
IETASKENQHIQNPKTDDKQGVQLVDDADSKEGTNGATLITRDAVLLPQP
QEPAPEKPVSSTKDEINFDFEKCLDYVKSGVEAIIEDDVTSRFEAEELKS
WNMLTRTNRHYEFISWKITSIWVFGFFIRYVILMPLRVLVCFVGVVWLTV
CTAAVGYLKDGPFKRDLVHKVLGMCFGVLSSAISAVITYHNEDNRPSSGI
CVANHTSPIDVLVLMCDSTYSLIGQRHGGFLGVLQRALARASPHIWFERG
EAKDRHLVAERLKQHVSDPNNPPILIFPEGTCINNTSVMQFKKGSFEVGG
VIYPVAIKYDPRFGDAFWNSAKYSMMQYLYMMMTSWAIVCDVWYLPPMYR
QEGESAIDFANRVKSVIAKQGGLIDLVWDGQLKRMKPKKEWREIQQVEFA
NRLKSDSTASFLDH
BO09048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3209-PB | 458 | CG3209-PB | 1..458 | 1..458 | 2411 | 100 | Plus |
CG3209-PC | 459 | CG3209-PC | 1..459 | 1..458 | 2133 | 89.3 | Plus |
CG3209-PD | 537 | CG3209-PD | 274..537 | 195..458 | 1410 | 100 | Plus |
CG3209-PD | 537 | CG3209-PD | 1..274 | 1..273 | 1138 | 81.8 | Plus |
CG3209-PE | 380 | CG3209-PE | 1..195 | 1..195 | 1004 | 99.5 | Plus |
CG3209-PE | 380 | CG3209-PE | 188..380 | 263..458 | 999 | 96.4 | Plus |
CG15450-PA | 407 | CG15450-PA | 75..407 | 113..442 | 909 | 47.7 | Plus |