Clone BO09049 Report

Search the DGRC for BO09049

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptJhI-21-RA
Protein status:BO09049.pep: validated full length
Sequenced Size:1534

Clone Sequence Records

BO09049.3prime Sequence

940 bp (811 high quality bases) assembled on 2006-01-10

> BO09049.3prime
ATGGTCTAGAAAGCTTGCGTTAATAGCCTCATTCGATTCGATAATGGTGG
TATTGAAGATGGCCCGGCAAATCTCCACTACGGAATTGGACAATCGGCCG
TAGCACTTGGGCTTCTTTTTTCGGGCGATGAAGGCGTAGTAGAACGGAAT
GCCAGCCAGGGTTATGCCGATGCCAATGAGCAGATTTTGTGGCTCCTCCA
AATTGGGCAGCAGTACGAGTGTCACGCAGCTTACCATGAAGGTGATGGGC
AGCGCAAGATGGACTTTAATGGGTCGGGGCAAGTCGGGCCTCTTATGCCG
GAGCCACAACATTCCGGCTATGCTGGCCACCACTGAGAGCCAGAGCACCG
AGCTGAAGTAGTTGATCAACTGGTACACGTTATCCGTGAGCAGCATGAGC
AGCGACATAAGACACGTGAAAATCAGGGAGGGAATGGGCGTCTGTTGTTT
CACGTGGAACAGCTGGAAAAACTTGGGCAAATGCCCCTCCTGAGCCCCAG
TAGCGAAAAGGCGCGCCGATGTGAAGAGCACCCCGTTGACGCCACCAAAT
GTGCTTAGCGCCACGAAAATGGGCACCATGAAGGCCAGCGGTCCGAACAC
TCGGTTTCCAAAGGTCACCGCCACGGCCAGCGAACTGAGCATCTCCGGCT
TGTTTACCACGGCGAAATAGGCCAAGTTGACCAGAACATAGATGCTCGTG
ACCAGGGGCATGGCTATCCAAATGGCGCGCGGCAGATTCTTGTATGGATC
CTGTAGCTCCTCCGTCACAAAGTTTAAGTAGTTCCAGCCACCAAAGGCAA
ACAGACCGGAGTAGAAGGCGTAGCCCATGTTGCGGGCCGTGTAGATACCC
TCCCACGGATTTCTGAAGTTCTCCAGCTCGCCAGTGGCCATGTAGTACAG
TCCGGACAGGATAATCATGATGAGGGCCAGCAGCTTGCCC

BO09049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12317-PA 1503 JhI-21-RA 579..1500 940..19 4585 99.8 Minus
CG12317-PB 1503 JhI-21-RB 579..1500 940..19 4585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 2149 CG12317-RC 750..1671 940..19 4595 99.9 Minus
JhI-21-RE 2182 CG12317-RE 783..1704 940..19 4595 99.9 Minus
JhI-21-RD 2119 CG12317-RD 720..1641 940..19 4595 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12052764..12053088 415..739 1625 100 Plus
2L 23513712 2L 12052233..12052505 19..291 1365 100 Plus
2L 23513712 2L 12053656..12053857 739..940 995 99.5 Plus
2L 23513712 2L 12052559..12052685 289..415 635 100 Plus
3R 32079331 3R 27110176..27110337 658..819 255 77.2 Plus
Blast to na_te.dros performed on 2015-02-12 19:09:30 has no hits.

BO09049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:25 Download gff for BO09049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PA 579..1503 18..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:14 Download gff for BO09049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PB 579..1503 18..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:00 Download gff for BO09049.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 700..1626 13..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:22 Download gff for BO09049.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RD 720..1646 13..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:22 Download gff for BO09049.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12052560..12052684 290..414 100 <- Plus
2L 12052228..12052503 13..289 98 <- Plus
2L 12052764..12053088 415..739 100 <- Plus
2L 12053657..12053857 740..940 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:00 Download gff for BO09049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12052228..12052503 13..289 98 <- Plus
arm_2L 12052560..12052684 290..414 100 <- Plus
arm_2L 12052764..12053088 415..739 100 <- Plus
arm_2L 12053657..12053857 740..940 99   Plus

BO09049.5prime Sequence

912 bp (771 high quality bases) assembled on 2006-01-10

> BO09049.5prime
GAAGTTATCAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCA
GCCTGGTCGAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCC
GCTGATGGCGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAA
TGGAGTGGCCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTG
CTCCCACGGGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTG
ATTTGGCTGACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGC
GGAACTGGGCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGC
TGGTGTCCTTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCGCACTG
CTCATCATCCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCA
TTATGCGGTCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGG
TGAAACTGCTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGC
CTGTCGGTGAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAA
GCTGCTGGCCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCA
CTGGCGAGCTGGAGAACTTCAGAAATCCGTGGGAGGGTATCTACACGGCC
CGCAACATTGGCTACGCCTTCTACTCCGGTCTGTTTGCCTTTGGTGGCTG
GAACTACTTAAACTTTGTGACGGAGGAGCTACAGGATCCATACAAGAATC
TGCCGCGCGCCATTTGGATAGCCATGCCCCTGGTCACGAGCATCTATGTT
CTGGTCAACTTGGCCTATTTCGGCGTGGTAAACAGCCGGAGATGCTCAGN
TCGCTGGCCGTG

BO09049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12317-PA 1503 JhI-21-RA 1..868 17..884 4315 99.8 Plus
CG12317-PB 1503 JhI-21-RB 1..868 17..884 4315 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 2149 CG12317-RC 171..1068 16..912 4439 99.7 Plus
JhI-21-RE 2182 CG12317-RE 204..1101 16..912 4439 99.7 Plus
JhI-21-RD 2119 CG12317-RD 141..1038 16..912 4439 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12053656..12053924 796..528 1345 100 Minus
2L 23513712 2L 12055085..12055297 228..16 1065 100 Minus
2L 23513712 2L 12054303..12054498 424..229 980 100 Minus
2L 23513712 2L 12053982..12054086 527..423 525 100 Minus
2L 23513712 2L 12052971..12053088 912..796 514 97.5 Minus
3R 32079331 3R 27110185..27110337 868..716 240 77.1 Minus
Blast to na_te.dros performed on 2015-02-10 19:59:22 has no hits.

BO09049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:25 Download gff for BO09049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PA 1..897 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:15 Download gff for BO09049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PB 1..897 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:37 Download gff for BO09049.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 114..1018 9..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:01 Download gff for BO09049.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RD 134..1038 9..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:01 Download gff for BO09049.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12055085..12055304 9..228 98   Minus
2L 12052971..12053088 796..912 97 <- Minus
2L 12053657..12053924 528..795 100 <- Minus
2L 12053982..12054084 425..527 100 <- Minus
2L 12054303..12054498 229..424 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:37 Download gff for BO09049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12052971..12053088 796..912 97 <- Minus
arm_2L 12053657..12053924 528..795 100 <- Minus
arm_2L 12053982..12054084 425..527 100 <- Minus
arm_2L 12054303..12054498 229..424 100 <- Minus
arm_2L 12055085..12055304 9..228 98   Minus

BO09049.complete Sequence

1534 bp (1534 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631367

> BO09049.complete
GAAGTTATCAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCA
GCCTGGTCGAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCC
GCTGATGGCGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAA
TGGAGTGGCCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTG
CTCCCACGGGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTG
ATTTGGCTGACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGC
GGAACTGGGCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGC
TGGTGTCCTTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCGCACTG
CTCATCATCCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCA
TTATGCGGTCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGG
TGAAACTGCTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGC
CTGTCGGTGAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAA
GCTGCTGGCCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCA
CTGGCGAGCTGGAGAACTTCAGAAATCCGTGGGAGGGTATCTACACGGCC
CGCAACATTGGCTACGCCTTCTACTCCGGTCTGTTTGCCTTTGGTGGCTG
GAACTACTTAAACTTTGTGACGGAGGAGCTACAGGATCCATACAAGAATC
TGCCGCGCGCCATTTGGATAGCCATGCCCCTGGTCACGAGCATCTATGTT
CTGGTCAACTTGGCCTATTTCGCCGTGGTAAACAAGCCGGAGATGCTCAG
TTCGCTGGCCGTGGCGGTGACCTTTGGAAACCGAGTGTTCGGACCGCTGG
CCTTCATGGTGCCCATTTTCGTGGCGCTAAGCACATTTGGTGGCGTCAAC
GGGGTGCTCTTCACATCGGCGCGCCTTTTCGCTACTGGGGCTCAGGAGGG
GCATTTGCCCAAGTTTTTCCAGCTGTTCCACGTGAAACAACAGACGCCCA
TTCCCTCCCTGATTTTCACGTGTCTTATGTCGCTGCTCATGCTGCTCACG
GATAACGTGTACCAGTTGATCAACTACTTCAGCTCGGTGCTCTGGCTCTC
AGTGGTGGCCAGCATAGCCGGAATGTTGTGGCTCCGGCATAAGAGGCCCG
ACTTGCCCCGACCCATTAAAGTCCATCTTGCGCTGCCCATCACCTTCATG
GTAAGCTGCGTGACACTCGTACTGCTGCCCAATTTGGAGGAGCCACAAAA
TCTGCTCATTGGCATCGGCATAACCCTGGCTGGCATTCCGTTCTACTACG
CCTTCATCGCCCGAAAAAAGAAGCCCAAGTGCTACGGCCGATTGTCCAAT
TCCGTAGTGGAGATTTGCCGGGCCATCTTCAATACCACCATTATCGAATC
GAATGAGGCTATTAACGCAAGCTTTCTAGACCAT

BO09049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 1503 CG12317-PC 1..1500 17..1516 7500 100 Plus
JhI-21-RE 1503 CG12317-PE 1..1500 17..1516 7500 100 Plus
JhI-21-RD 1503 CG12317-PD 1..1500 17..1516 7500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 2149 CG12317-RC 171..1671 16..1516 7505 100 Plus
JhI-21-RE 2182 CG12317-RE 204..1704 16..1516 7505 100 Plus
JhI-21-RD 2119 CG12317-RD 141..1641 16..1516 7505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12052764..12053088 1120..796 1625 100 Minus
2L 23513712 2L 12052233..12052505 1516..1244 1365 100 Minus
2L 23513712 2L 12053656..12053924 796..528 1345 100 Minus
2L 23513712 2L 12055085..12055297 228..16 1065 100 Minus
2L 23513712 2L 12054303..12054498 424..229 980 100 Minus
2L 23513712 2L 12052559..12052685 1246..1120 635 100 Minus
2L 23513712 2L 12053982..12054086 527..423 525 100 Minus
3R 32079331 3R 27110176..27110337 877..716 255 77.2 Minus
Blast to na_te.dros performed on 2014-11-27 01:34:34 has no hits.

BO09049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:31 Download gff for BO09049.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 1..1503 17..1517 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:21 Download gff for BO09049.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 111..1623 9..1522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:17 Download gff for BO09049.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 122..1621 17..1518 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:31 Download gff for BO09049.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 111..1623 9..1522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:09 Download gff for BO09049.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RD 142..1641 17..1518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:09 Download gff for BO09049.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12052764..12053088 796..1120 100 <- Minus
2L 12053657..12053924 528..795 100 <- Minus
2L 12053982..12054084 425..527 100 <- Minus
2L 12054303..12054498 229..424 100 <- Minus
2L 12052231..12052503 1246..1518 99 <- Minus
2L 12052560..12052684 1121..1245 100 <- Minus
2L 12055085..12055296 17..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:17 Download gff for BO09049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12054303..12054498 229..424 100 <- Minus
arm_2L 12055085..12055296 17..228 100   Minus
arm_2L 12052764..12053088 796..1120 100 <- Minus
arm_2L 12053657..12053924 528..795 100 <- Minus
arm_2L 12052231..12052503 1246..1518 99 <- Minus
arm_2L 12052560..12052684 1121..1245 100 <- Minus
arm_2L 12053982..12054084 425..527 100 <- Minus

BO09049.pep Sequence

Translation from 16 to 1534

> BO09049.pep
MTDRYANGVTTSLVEPTNGCAAPGNPNPADGEEKIVLKRKLTLINGVAII
VGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALCYAELGTC
ITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKP
FFPECDPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALI
MIILSGLYYMATGELENFRNPWEGIYTARNIGYAFYSGLFAFGGWNYLNF
VTEELQDPYKNLPRAIWIAMPLVTSIYVLVNLAYFAVVNKPEMLSSLAVA
VTFGNRVFGPLAFMVPIFVALSTFGGVNGVLFTSARLFATGAQEGHLPKF
FQLFHVKQQTPIPSLIFTCLMSLLMLLTDNVYQLINYFSSVLWLSVVASI
AGMLWLRHKRPDLPRPIKVHLALPITFMVSCVTLVLLPNLEEPQNLLIGI
GITLAGIPFYYAFIARKKKPKCYGRLSNSVVEICRAIFNTTIIESNEAIN
ASFLDH

BO09049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-PC 500 CG12317-PC 1..500 1..500 2579 100 Plus
JhI-21-PE 500 CG12317-PE 1..500 1..500 2579 100 Plus
JhI-21-PD 500 CG12317-PD 1..500 1..500 2579 100 Plus
JhI-21-PB 500 CG12317-PB 1..500 1..500 2579 100 Plus
JhI-21-PA 500 CG12317-PA 1..500 1..500 2579 100 Plus