Clone Sequence Records
BO09049.3prime Sequence
940 bp (811 high quality bases) assembled on 2006-01-10
> BO09049.3prime
ATGGTCTAGAAAGCTTGCGTTAATAGCCTCATTCGATTCGATAATGGTGG
TATTGAAGATGGCCCGGCAAATCTCCACTACGGAATTGGACAATCGGCCG
TAGCACTTGGGCTTCTTTTTTCGGGCGATGAAGGCGTAGTAGAACGGAAT
GCCAGCCAGGGTTATGCCGATGCCAATGAGCAGATTTTGTGGCTCCTCCA
AATTGGGCAGCAGTACGAGTGTCACGCAGCTTACCATGAAGGTGATGGGC
AGCGCAAGATGGACTTTAATGGGTCGGGGCAAGTCGGGCCTCTTATGCCG
GAGCCACAACATTCCGGCTATGCTGGCCACCACTGAGAGCCAGAGCACCG
AGCTGAAGTAGTTGATCAACTGGTACACGTTATCCGTGAGCAGCATGAGC
AGCGACATAAGACACGTGAAAATCAGGGAGGGAATGGGCGTCTGTTGTTT
CACGTGGAACAGCTGGAAAAACTTGGGCAAATGCCCCTCCTGAGCCCCAG
TAGCGAAAAGGCGCGCCGATGTGAAGAGCACCCCGTTGACGCCACCAAAT
GTGCTTAGCGCCACGAAAATGGGCACCATGAAGGCCAGCGGTCCGAACAC
TCGGTTTCCAAAGGTCACCGCCACGGCCAGCGAACTGAGCATCTCCGGCT
TGTTTACCACGGCGAAATAGGCCAAGTTGACCAGAACATAGATGCTCGTG
ACCAGGGGCATGGCTATCCAAATGGCGCGCGGCAGATTCTTGTATGGATC
CTGTAGCTCCTCCGTCACAAAGTTTAAGTAGTTCCAGCCACCAAAGGCAA
ACAGACCGGAGTAGAAGGCGTAGCCCATGTTGCGGGCCGTGTAGATACCC
TCCCACGGATTTCTGAAGTTCTCCAGCTCGCCAGTGGCCATGTAGTACAG
TCCGGACAGGATAATCATGATGAGGGCCAGCAGCTTGCCC
BO09049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12317-PA | 1503 | JhI-21-RA | 579..1500 | 940..19 | 4585 | 99.8 | Minus |
CG12317-PB | 1503 | JhI-21-RB | 579..1500 | 940..19 | 4585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-21-RC | 2149 | CG12317-RC | 750..1671 | 940..19 | 4595 | 99.9 | Minus |
JhI-21-RE | 2182 | CG12317-RE | 783..1704 | 940..19 | 4595 | 99.9 | Minus |
JhI-21-RD | 2119 | CG12317-RD | 720..1641 | 940..19 | 4595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12052764..12053088 | 415..739 | 1625 | 100 | Plus |
2L | 23513712 | 2L | 12052233..12052505 | 19..291 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 12053656..12053857 | 739..940 | 995 | 99.5 | Plus |
2L | 23513712 | 2L | 12052559..12052685 | 289..415 | 635 | 100 | Plus |
3R | 32079331 | 3R | 27110176..27110337 | 658..819 | 255 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:09:30 has no hits.
BO09049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:25 Download gff for
BO09049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12317-PA | 579..1503 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:14 Download gff for
BO09049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12317-PB | 579..1503 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:00 Download gff for
BO09049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RB | 700..1626 | 13..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:22 Download gff for
BO09049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RD | 720..1646 | 13..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:22 Download gff for
BO09049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12052560..12052684 | 290..414 | 100 | <- | Plus |
2L | 12052228..12052503 | 13..289 | 98 | <- | Plus |
2L | 12052764..12053088 | 415..739 | 100 | <- | Plus |
2L | 12053657..12053857 | 740..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:00 Download gff for
BO09049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12052228..12052503 | 13..289 | 98 | <- | Plus |
arm_2L | 12052560..12052684 | 290..414 | 100 | <- | Plus |
arm_2L | 12052764..12053088 | 415..739 | 100 | <- | Plus |
arm_2L | 12053657..12053857 | 740..940 | 99 | | Plus |
BO09049.5prime Sequence
912 bp (771 high quality bases) assembled on 2006-01-10
> BO09049.5prime
GAAGTTATCAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCA
GCCTGGTCGAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCC
GCTGATGGCGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAA
TGGAGTGGCCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTG
CTCCCACGGGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTG
ATTTGGCTGACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGC
GGAACTGGGCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGC
TGGTGTCCTTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCGCACTG
CTCATCATCCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCA
TTATGCGGTCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGG
TGAAACTGCTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGC
CTGTCGGTGAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAA
GCTGCTGGCCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCA
CTGGCGAGCTGGAGAACTTCAGAAATCCGTGGGAGGGTATCTACACGGCC
CGCAACATTGGCTACGCCTTCTACTCCGGTCTGTTTGCCTTTGGTGGCTG
GAACTACTTAAACTTTGTGACGGAGGAGCTACAGGATCCATACAAGAATC
TGCCGCGCGCCATTTGGATAGCCATGCCCCTGGTCACGAGCATCTATGTT
CTGGTCAACTTGGCCTATTTCGGCGTGGTAAACAGCCGGAGATGCTCAGN
TCGCTGGCCGTG
BO09049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12317-PA | 1503 | JhI-21-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
CG12317-PB | 1503 | JhI-21-RB | 1..868 | 17..884 | 4315 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-21-RC | 2149 | CG12317-RC | 171..1068 | 16..912 | 4439 | 99.7 | Plus |
JhI-21-RE | 2182 | CG12317-RE | 204..1101 | 16..912 | 4439 | 99.7 | Plus |
JhI-21-RD | 2119 | CG12317-RD | 141..1038 | 16..912 | 4439 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12053656..12053924 | 796..528 | 1345 | 100 | Minus |
2L | 23513712 | 2L | 12055085..12055297 | 228..16 | 1065 | 100 | Minus |
2L | 23513712 | 2L | 12054303..12054498 | 424..229 | 980 | 100 | Minus |
2L | 23513712 | 2L | 12053982..12054086 | 527..423 | 525 | 100 | Minus |
2L | 23513712 | 2L | 12052971..12053088 | 912..796 | 514 | 97.5 | Minus |
3R | 32079331 | 3R | 27110185..27110337 | 868..716 | 240 | 77.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:59:22 has no hits.
BO09049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:25 Download gff for
BO09049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12317-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:15 Download gff for
BO09049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12317-PB | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:37 Download gff for
BO09049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RB | 114..1018 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:01 Download gff for
BO09049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RD | 134..1038 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:01 Download gff for
BO09049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12055085..12055304 | 9..228 | 98 | | Minus |
2L | 12052971..12053088 | 796..912 | 97 | <- | Minus |
2L | 12053657..12053924 | 528..795 | 100 | <- | Minus |
2L | 12053982..12054084 | 425..527 | 100 | <- | Minus |
2L | 12054303..12054498 | 229..424 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:37 Download gff for
BO09049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12052971..12053088 | 796..912 | 97 | <- | Minus |
arm_2L | 12053657..12053924 | 528..795 | 100 | <- | Minus |
arm_2L | 12053982..12054084 | 425..527 | 100 | <- | Minus |
arm_2L | 12054303..12054498 | 229..424 | 100 | <- | Minus |
arm_2L | 12055085..12055304 | 9..228 | 98 | | Minus |
BO09049.complete Sequence
1534 bp (1534 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631367
> BO09049.complete
GAAGTTATCAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCA
GCCTGGTCGAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCC
GCTGATGGCGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAA
TGGAGTGGCCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTG
CTCCCACGGGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTG
ATTTGGCTGACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGC
GGAACTGGGCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGC
TGGTGTCCTTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCGCACTG
CTCATCATCCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCA
TTATGCGGTCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGG
TGAAACTGCTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGC
CTGTCGGTGAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAA
GCTGCTGGCCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCA
CTGGCGAGCTGGAGAACTTCAGAAATCCGTGGGAGGGTATCTACACGGCC
CGCAACATTGGCTACGCCTTCTACTCCGGTCTGTTTGCCTTTGGTGGCTG
GAACTACTTAAACTTTGTGACGGAGGAGCTACAGGATCCATACAAGAATC
TGCCGCGCGCCATTTGGATAGCCATGCCCCTGGTCACGAGCATCTATGTT
CTGGTCAACTTGGCCTATTTCGCCGTGGTAAACAAGCCGGAGATGCTCAG
TTCGCTGGCCGTGGCGGTGACCTTTGGAAACCGAGTGTTCGGACCGCTGG
CCTTCATGGTGCCCATTTTCGTGGCGCTAAGCACATTTGGTGGCGTCAAC
GGGGTGCTCTTCACATCGGCGCGCCTTTTCGCTACTGGGGCTCAGGAGGG
GCATTTGCCCAAGTTTTTCCAGCTGTTCCACGTGAAACAACAGACGCCCA
TTCCCTCCCTGATTTTCACGTGTCTTATGTCGCTGCTCATGCTGCTCACG
GATAACGTGTACCAGTTGATCAACTACTTCAGCTCGGTGCTCTGGCTCTC
AGTGGTGGCCAGCATAGCCGGAATGTTGTGGCTCCGGCATAAGAGGCCCG
ACTTGCCCCGACCCATTAAAGTCCATCTTGCGCTGCCCATCACCTTCATG
GTAAGCTGCGTGACACTCGTACTGCTGCCCAATTTGGAGGAGCCACAAAA
TCTGCTCATTGGCATCGGCATAACCCTGGCTGGCATTCCGTTCTACTACG
CCTTCATCGCCCGAAAAAAGAAGCCCAAGTGCTACGGCCGATTGTCCAAT
TCCGTAGTGGAGATTTGCCGGGCCATCTTCAATACCACCATTATCGAATC
GAATGAGGCTATTAACGCAAGCTTTCTAGACCAT
BO09049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-21-RC | 1503 | CG12317-PC | 1..1500 | 17..1516 | 7500 | 100 | Plus |
JhI-21-RE | 1503 | CG12317-PE | 1..1500 | 17..1516 | 7500 | 100 | Plus |
JhI-21-RD | 1503 | CG12317-PD | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-21-RC | 2149 | CG12317-RC | 171..1671 | 16..1516 | 7505 | 100 | Plus |
JhI-21-RE | 2182 | CG12317-RE | 204..1704 | 16..1516 | 7505 | 100 | Plus |
JhI-21-RD | 2119 | CG12317-RD | 141..1641 | 16..1516 | 7505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12052764..12053088 | 1120..796 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 12052233..12052505 | 1516..1244 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 12053656..12053924 | 796..528 | 1345 | 100 | Minus |
2L | 23513712 | 2L | 12055085..12055297 | 228..16 | 1065 | 100 | Minus |
2L | 23513712 | 2L | 12054303..12054498 | 424..229 | 980 | 100 | Minus |
2L | 23513712 | 2L | 12052559..12052685 | 1246..1120 | 635 | 100 | Minus |
2L | 23513712 | 2L | 12053982..12054086 | 527..423 | 525 | 100 | Minus |
3R | 32079331 | 3R | 27110176..27110337 | 877..716 | 255 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:34:34 has no hits.
BO09049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:31 Download gff for
BO09049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RB | 1..1503 | 17..1517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:21 Download gff for
BO09049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RB | 111..1623 | 9..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:17 Download gff for
BO09049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RB | 122..1621 | 17..1518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:31 Download gff for
BO09049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RB | 111..1623 | 9..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:09 Download gff for
BO09049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-21-RD | 142..1641 | 17..1518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:09 Download gff for
BO09049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12052764..12053088 | 796..1120 | 100 | <- | Minus |
2L | 12053657..12053924 | 528..795 | 100 | <- | Minus |
2L | 12053982..12054084 | 425..527 | 100 | <- | Minus |
2L | 12054303..12054498 | 229..424 | 100 | <- | Minus |
2L | 12052231..12052503 | 1246..1518 | 99 | <- | Minus |
2L | 12052560..12052684 | 1121..1245 | 100 | <- | Minus |
2L | 12055085..12055296 | 17..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:17 Download gff for
BO09049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12054303..12054498 | 229..424 | 100 | <- | Minus |
arm_2L | 12055085..12055296 | 17..228 | 100 | | Minus |
arm_2L | 12052764..12053088 | 796..1120 | 100 | <- | Minus |
arm_2L | 12053657..12053924 | 528..795 | 100 | <- | Minus |
arm_2L | 12052231..12052503 | 1246..1518 | 99 | <- | Minus |
arm_2L | 12052560..12052684 | 1121..1245 | 100 | <- | Minus |
arm_2L | 12053982..12054084 | 425..527 | 100 | <- | Minus |
BO09049.pep Sequence
Translation from 16 to 1534
> BO09049.pep
MTDRYANGVTTSLVEPTNGCAAPGNPNPADGEEKIVLKRKLTLINGVAII
VGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALCYAELGTC
ITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKP
FFPECDPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALI
MIILSGLYYMATGELENFRNPWEGIYTARNIGYAFYSGLFAFGGWNYLNF
VTEELQDPYKNLPRAIWIAMPLVTSIYVLVNLAYFAVVNKPEMLSSLAVA
VTFGNRVFGPLAFMVPIFVALSTFGGVNGVLFTSARLFATGAQEGHLPKF
FQLFHVKQQTPIPSLIFTCLMSLLMLLTDNVYQLINYFSSVLWLSVVASI
AGMLWLRHKRPDLPRPIKVHLALPITFMVSCVTLVLLPNLEEPQNLLIGI
GITLAGIPFYYAFIARKKKPKCYGRLSNSVVEICRAIFNTTIIESNEAIN
ASFLDH
BO09049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-21-PC | 500 | CG12317-PC | 1..500 | 1..500 | 2579 | 100 | Plus |
JhI-21-PE | 500 | CG12317-PE | 1..500 | 1..500 | 2579 | 100 | Plus |
JhI-21-PD | 500 | CG12317-PD | 1..500 | 1..500 | 2579 | 100 | Plus |
JhI-21-PB | 500 | CG12317-PB | 1..500 | 1..500 | 2579 | 100 | Plus |
JhI-21-PA | 500 | CG12317-PA | 1..500 | 1..500 | 2579 | 100 | Plus |