Clone Sequence Records
BO09054.3prime Sequence
839 bp (838 high quality bases) assembled on 2006-01-10
> BO09054.3prime
ATGGTCTAGAAAGCTTGCCGACAAGGAGGGCACTGGGATGACGGTCTGGA
AGAGATGCAGTCGCGCATCGGCGTGTCCCAGCTTATTGGTGGCATTGCAG
TAGTAGTCCCCAAAGTCCTCCTCGCCCACGCTATCGATGCGCAGCACAGA
GGTTGTGGTTCCCGAGGAGGAGGCGGTGTTGGCCACCTCGTGGTGCCGGC
TAGACTGCAGGGGCACGCCATTCTTGTGCCAAACTACAGTCGGAGCCGGG
TAGCCCTGCACGGAGCACTCCAGCTCCGCGGAATGGGACACCATTTGGGC
GATCTTGGGCCTCTGGACGGCAATCTGCGGACGGAACTCCACTTCGACCC
GGATCAACCTCTTGTCCGGCTGGCCCTCTCCGTTCTGCGCGATGCAGTAG
TAGCCGCCGCGATCCATCCGGTGCACGGAACGAATCCGGAGAGTTGGTTC
GGCCAGCAAATGGCCACCGGCAGGCATCACTGCATTATGCTCGCGGGCCC
AGGAGATCGTAGGCTTGGGAAAGCCATTGGCATGGCAGGTCAGCTCCAGA
TTCTGTCCCTCTGTCACCAGGGTGCTCTTGGGGGTGTTCTCCGCAATCAC
CGGCGGGGTCTTGATCTGCAGGCTCAGCTTCTTGGTCACCTTCTCCGTGG
CCGAAACAAGCACCTGACACTCGTACGGACCCATGTCACTGACTTCGATG
TTCTGAATGCGGAAGGTGTAAATGGCACTTCCGGTCTTGGGTCCTTCGGT
GACCGTTACGTTGTACCGCTGGTCGGGCAGACTGAGGATATTCCGCATGG
AGAGCACCACCGAGTTGGTGTCCGACTCGCTGGGACGCT
BO09054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2198-PB | 1026 | Ama-RB | 203..1023 | 839..19 | 4105 | 100 | Minus |
| CG2198-PA | 1002 | Ama-RA | 179..999 | 839..19 | 4105 | 100 | Minus |
| CG2198-PC | 1002 | Ama-RC | 179..999 | 839..19 | 4105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RC | 1526 | CG2198-RC | 283..1103 | 839..19 | 4105 | 100 | Minus |
| Ama-RA | 1542 | CG2198-RA | 299..1119 | 839..19 | 4105 | 100 | Minus |
| Ama-RB | 1833 | CG2198-RB | 590..1410 | 839..19 | 4105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6764018..6764838 | 839..19 | 4105 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:13:11 has no hits.
BO09054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:32 Download gff for
BO09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-PC | 179..1002 | 15..839 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:24 Download gff for
BO09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2198-PC | 179..1002 | 15..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:12:56 Download gff for
BO09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 590..1413 | 15..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:34:15 Download gff for
BO09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 590..1413 | 15..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:34:15 Download gff for
BO09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6764018..6764841 | 15..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:12:56 Download gff for
BO09054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2589740..2590563 | 15..839 | 99 | | Minus |
BO09054.5prime Sequence
903 bp (869 high quality bases) assembled on 2006-01-10
> BO09054.5prime
GAAGTTATCAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATAT
TCTGCCTTGCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGC
CAGATCAGCAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAA
CTGCACCGTGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTC
CCAGCGAGTCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTC
AGTCTGCCCGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGAC
CGGAAGTGCCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACA
TGGGTCCGTACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACC
AAGAAGCTGAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACAC
CCCCAAGAGCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCC
ATGCCAATGGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAAT
GCAGTGATGCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGAT
TCGTTCCGTGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGA
ACGGAGAGGGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTC
CGTCCGCAGATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCA
TTCCGCGGAGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAG
TTTGGCACAAGAATGGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTG
GCCAACACCGCCTCCTCCTCGGGAACACAACCTCTGTGCTGCGCATCGAT
AGC
BO09054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2198-PB | 1026 | Ama-RB | 22..884 | 14..876 | 4315 | 100 | Plus |
| CG2198-PA | 1002 | Ama-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG2198-PC | 1002 | Ama-RC | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG2198-PB | 1026 | Ama-RB | 885..912 | 876..903 | 140 | 100 | Plus |
| CG2198-PA | 1002 | Ama-RA | 861..888 | 876..903 | 140 | 100 | Plus |
| CG2198-PC | 1002 | Ama-RC | 861..888 | 876..903 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RC | 1526 | CG2198-RC | 102..992 | 14..903 | 4430 | 99.9 | Plus |
| Ama-RA | 1542 | CG2198-RA | 118..1008 | 14..903 | 4430 | 99.9 | Plus |
| Ama-RB | 1833 | CG2198-RB | 409..1299 | 14..903 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6763837..6764727 | 14..903 | 4405 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:43:01 has no hits.
BO09054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:33 Download gff for
BO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2198-PB | 20..912 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:25 Download gff for
BO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2198-PB | 20..912 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:59:45 Download gff for
BO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1299 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:47 Download gff for
BO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1299 | 9..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:47 Download gff for
BO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6763827..6764727 | 5..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:59:45 Download gff for
BO09054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2589549..2590449 | 5..903 | 99 | | Plus |
BO09054.complete Sequence
1033 bp (1033 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631368
> BO09054.complete
GAAGTTATCAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATAT
TCTGCCTTGCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGC
CAGATCAGCAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAA
CTGCACCGTGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTC
CCAGCGAGTCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTC
AGTCTGCCCGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGAC
CGGAAGTGCCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACA
TGGGTCCGTACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACC
AAGAAGCTGAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACAC
CCCCAAGAGCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCC
ATGCCAATGGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAAT
GCAGTGATGCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGAT
TCGTTCCGTGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGA
ACGGAGAGGGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTC
CGTCCGCAGATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCA
TTCCGCGGAGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAG
TTTGGCACAAGAATGGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTG
GCCAACACCGCCTCCTCCTCGGGAACCACAACCTCTGTGCTGCGCATCGA
TAGCGTGGGCGAGGAGGACTTTGGGGACTACTACTGCAATGCCACCAATA
AGCTGGGACACGCCGATGCGCGACTGCATCTCTTCCAGACCGTCATCCCA
GTGCCCTCCTTGTCGGCAAGCTTTCTAGACCAT
BO09054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RB | 1026 | CG2198-PB | 22..1023 | 14..1015 | 5010 | 100 | Plus |
| Ama-RC | 1002 | CG2198-PC | 1..999 | 17..1015 | 4995 | 100 | Plus |
| Ama-RA | 1002 | CG2198-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RC | 1526 | CG2198-RC | 102..1103 | 14..1015 | 5010 | 100 | Plus |
| Ama-RA | 1542 | CG2198-RA | 118..1119 | 14..1015 | 5010 | 100 | Plus |
| Ama-RB | 1833 | CG2198-RB | 409..1410 | 14..1015 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6763837..6764838 | 14..1015 | 5010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:53:36 has no hits.
BO09054.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:34 Download gff for
BO09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 20..1026 | 9..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:25 Download gff for
BO09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RC | 95..1104 | 6..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:46 Download gff for
BO09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 412..1410 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:34 Download gff for
BO09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RC | 95..1104 | 6..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:37 Download gff for
BO09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 412..1410 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:37 Download gff for
BO09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6763840..6764838 | 17..1017 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:46 Download gff for
BO09054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2589562..2590560 | 17..1017 | 99 | | Plus |
BO09054.pep Sequence
Translation from 16 to 1033
> BO09054.pep
MARLRLLIGLIFCLAISLDSVLSAPVISQISKDVVASVGDSVEFNCTVEE
VGQLSVSWAKRPSESDTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIY
TFRIQNIEVSDMGPYECQVLVSATEKVTKKLSLQIKTPPVIAENTPKSTL
VTEGQNLELTCHANGFPKPTISWAREHNAVMPAGGHLLAEPTLRIRSVHR
MDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSHSAELE
CSVQGYPAPTVVWHKNGVPLQSSRHHEVANTASSSGTTTSVLRIDSVGEE
DFGDYYCNATNKLGHADARLHLFQTVIPVPSLSASFLDH
BO09054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-PC | 333 | CG2198-PC | 1..333 | 1..333 | 1713 | 100 | Plus |
| Ama-PA | 333 | CG2198-PA | 1..333 | 1..333 | 1713 | 100 | Plus |
| Ama-PB | 341 | CG2198-PB | 9..341 | 1..333 | 1713 | 100 | Plus |
| Lac-PA | 359 | CG12369-PA | 16..325 | 14..329 | 656 | 38.1 | Plus |
| CG34391-PE | 469 | CG34391-PE | 24..348 | 5..339 | 324 | 27.8 | Plus |
