Clone Sequence Records
BO09056.3prime Sequence
856 bp (855 high quality bases) assembled on 2006-01-10
> BO09056.3prime
ATGGTCTAGAAAGCTTGCTTCAAAGTTCTGATAATTCTCGGCGCTGACGA
ACTGTGCCCGTTGCTGGGGTGTCATGTTGAGATTACCGCGGTTCTTGTTG
TTGTAGGCCCAGATGACGCCGGTGGAGATCAGGGCAATGGTCAGCCAGCC
CATGAAGAACAACTGCAGCCACATGTGCTCGCCGCCGCTGTGATCCACGA
TAATTCCAGCCACGATAGTGATGACCGCCAAGCCAAGATTCTGTATCGAT
TGGCAGAAGCCGTAGGCCGTGCCCAATTGGTATTCCGGAATGATGAGAGC
CACCAGAGGCCACAGGCTTGCGGCCAGCATGGAATACGACAGTCCCATGA
TGATCATGCCCACATAGGGTGTCAGCTGGGTGAACGTAAGCAGGGCATGG
GCTCCAATGGTGGTCAGTGTCGCTGTGAACACCCAGGTCACATTCCTACC
CAGTTTGTCGATGATGAAACCAAAGACCGGAGACGATACGGCTGCAATTA
GATACACCAGCGAGTCCACGGTGTTGGCCTCAGCAGGCGAAAGCCCGAAG
CGATCAACAAAGAAATTCTGTCCGAGGGCAATGAATGGGAAGATGGCCAC
ATAGTAGGCGACGCAAATGATGGATACCATCCAAAAGGGTGGTTTGAACG
AAAAGACATCGGTGAGTTTCGGTATCTGTCCAGCCGGGTTGTTGTTACGC
TGCAAAATCCGCTCGGCCCTCTTGTCCATCCAGCCGAGGATGAGGGCACA
GGTCATCGACATCACACAGGTGAGGGTAGCCAGCAATAAGACGACGCCTA
GAGCGGTATGTCCCTTGTAAAAATTGCTCACATACTCATAGATGGGCTGC
ATCACC
BO09056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-PA | 1437 | CG8602-RA | 597..1434 | 856..19 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-RB | 2318 | CG8602-RB | 1111..1948 | 856..19 | 4190 | 100 | Minus |
| CG8602-RA | 2570 | CG8602-RA | 1111..1948 | 856..19 | 4190 | 100 | Minus |
| CG12194-RB | 2105 | CG12194-RB | 1366..1662 | 447..151 | 270 | 73.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7326895..7327732 | 19..856 | 4190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:22:19 has no hits.
BO09056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:37 Download gff for
BO09056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-PA | 597..1437 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:28 Download gff for
BO09056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-PA | 597..1437 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:05 Download gff for
BO09056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 1111..1948 | 19..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:34 Download gff for
BO09056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 1111..1948 | 19..856 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:34 Download gff for
BO09056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7326895..7327732 | 19..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:05 Download gff for
BO09056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7319995..7320832 | 19..856 | 100 | | Plus |
BO09056.5prime Sequence
938 bp (838 high quality bases) assembled on 2006-01-10
> BO09056.5prime
GAAGTTATCAGTCGACATGGCGCGCGAGGACGAGGAACGCATCGTGGACA
ATGAGGAGGTGTCGCGACCGACGGAGGAGGACCAAGTGGTCAGTCGGGCC
GGTCGGCGTGACAATGAACTGAGCCTTCCGTCCGGCGGCTGCTGCATGCC
CTCGAGCACGAGCCACCGCTTCATGGCTCTGGTGTTCATGTGCCTGCTGG
GATTCGGCTCCTATTTCTGTTACGATGCACCCGGCGCCCTGCAGAACTAT
TTCAAGAAAGATCTTAATCTGACCTCCGCCCAGTTCACACTCATCTACTC
GATTTACTCGTGGCCCAATGTCGTCCTGTGCTTCGTGGGAGGTTTCCTGA
TCGATCGACTGTTTGGCATTCGACTGGGCACGATTATCTACATGATGATC
CTGCTGGTGGGTCAGTTGATCTTTGCCTGCGGCGGCATTCTGGACGCCTT
CTGGATGATGATCCTGGGACGGTTTATCTTCGGCATTGGCGCCGAATCAC
TGGCGGTGGCCCAGAACAGCTATGCGGTGCTCTGGTTTAAGGGCAAGGAA
CTGAACATGGTATTCGGCCTGCAGCTGTCGGTTGCCCGATTCGGCAGCAC
CGTCAACTTCTGGGTGATGCAGCCCATCTATGAGTATGTGAGCAATTTTT
ACAAGGGACATACCGCTCTAGGCGTCGTCTTATTGCTGGCTACCCTCACC
TGTGTGATGTCGATGACCTGTGCCCTCATCCTCGGCTGGATGGACAAGAG
GGCCGAGCGGATTTTGCAGCGTAACAACAACCCGGCTGGACAGATACCGA
AACTCACCGATGTCTTTTCGTTCAAACCACCCTTTTGGATGGTATCCATC
ATTTGCGTCGCCTACTATGTGGNCATCTTCCCATTCATTTGCCTCGGACA
GAATTTCTTTGTTGATCGCTTCGGGCTTTTCGCTGCTG
BO09056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-PA | 1437 | CG8602-RA | 1..913 | 17..929 | 4471 | 99.5 | Plus |
| CG12194-PA | 1458 | CG12194-RA | 502..551 | 500..549 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-RB | 2318 | CG8602-RB | 508..1427 | 10..929 | 4514 | 99.3 | Plus |
| CG8602-RA | 2570 | CG8602-RA | 508..1427 | 10..929 | 4514 | 99.3 | Plus |
| CG12194-RB | 2105 | CG12194-RB | 497..965 | 153..621 | 905 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7327416..7328335 | 929..10 | 4514 | 99.3 | Minus |
| 2L | 23513712 | 2L | 4839579..4839991 | 209..621 | 850 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:52:26 has no hits.
BO09056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:38 Download gff for
BO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:30 Download gff for
BO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:53 Download gff for
BO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 508..1436 | 10..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:21 Download gff for
BO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 508..1436 | 10..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:21 Download gff for
BO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7327407..7328335 | 10..938 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:53 Download gff for
BO09056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7320507..7321435 | 10..938 | 99 | | Minus |
BO09056.complete Sequence
1468 bp assembled on 2007-10-17
GenBank Submission: FJ631369
> BO09056.complete
GAAGTTATCAGTCGACATGGCGCGCGAGGACGAGGAACGCATCGTGGACA
ATGAGGAGGTGTCGCGACCGACGGAGGAGGACCAAGTGGTCAGTCGGGCC
GGTCGGCGTGACAATGAACTGAGCCTTCCGTCCGGCGGCTGCTGCATGCC
CTCGAGCACGAGCCACCGCTTCATGGCTCTGGTGTTCATGTGCCTGCTGG
GATTCGGCTCCTATTTCTGTTACGATGCACCCGGCGCCCTGCAGAACTAT
TTCAAGAAAGATCTTAATCTGACCTCCGCCCAGTTCACACTCATCTACTC
GATTTACTCGTGGCCCAATGTCGTCCTGTGCTTCGTGGGAGGTTTCCTGA
TCGATCGACTGTTTGGCATTCGACTGGGCACGATTATCTACATGATGATC
CTGCTGGTGGGTCAGTTGATCTTTGCCTGCGGCGGCATTCTGGACGCCTT
CTGGATGATGATCCTGGGACGGTTTATCTTCGGCATTGGCGCCGAATCAC
TGGCGGTGGCCCAGAACAGCTATGCGGTGCTCTGGTTTAAGGGCAAGGAA
CTGAACATGGTATTCGGCCTGCAGCTGTCGGTTGCCCGATTCGGCAGCAC
CGTCAACTTCTGGGTGATGCAGCCCATCTATGAGTATGTGAGCAATTTTT
ACAAGGGACATACCGCTCTAGGCGTCGTCTTATTGCTGGCTACCCTCACC
TGTGTGATGTCGATGACCTGTGCCCTCATCCTCGGCTGGATGGACAAGAG
GGCCGAGCGGATTTTGCAGCGTAACAACAACCCGGCTGGACAGATACCGA
AACTCACCGATGTCTTTTCGTTCAAACCACCCTTTTGGATGGTATCCATC
ATTTGCGTCGCCTACTATGTGGCCATCTTCCCATTCATTGCCCTCGGACA
GAATTTCTTTGTTGATCGCTTCGGGCTTTCGCCTGCTGAGGCCAACACCG
TGGACTCGCTGGTGTATCTAATTGCAGCCGTATCGTCTCCGGTCTTTGGT
TTCATCATCGACAAACTGGGTAGGAATGTGACCTGGGTGTTCACAGCGAC
ACTGACCACCATTGGAGCCCATGCCCTGCTTACGTTCACCCAGCTGACAC
CCTATGTGGGCATGATCATCATGGGACTGTCGTATTCCATGCTGGCCGCA
AGCCTGTGGCCTCTGGTGGCTCTCATCATTCCGGAATACCAATTGGGCAC
GGCCTACGGCTTCTGCCAATCGATACAGAATCTTGGCTTGGCGGTCATCA
CTATCGTGGCTGGAATTATCGTGGATCACAGCGGCGGCGAGCACATGTGG
CTGCAGTTGTTCTTCATGGGCTGGCTGACCATTGCCCTGATCTCCACCGG
CGTCATCTGGGCCTACAACAACAAGAACCGCGGTAATCTCAACATGACAC
CCCAGCAACGGGCACAGTTCGTCAGCGCCGAGAATTATCAGAACTTTGAA
GCAAGCTTTCTAGACCAT
BO09056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-RB | 1437 | CG8602-PB | 1..1434 | 17..1450 | 7155 | 99.9 | Plus |
| CG8602-RA | 1437 | CG8602-PA | 1..1434 | 17..1450 | 7155 | 99.9 | Plus |
| CG12194-RB | 1491 | CG12194-PB | 155..1320 | 153..1318 | 955 | 72.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-RB | 2318 | CG8602-RB | 508..1948 | 10..1450 | 7160 | 99.8 | Plus |
| CG8602-RA | 2570 | CG8602-RA | 508..1948 | 10..1450 | 7160 | 99.8 | Plus |
| CG12194-RB | 2105 | CG12194-RB | 497..1662 | 153..1318 | 955 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7326895..7328335 | 1450..10 | 7160 | 99.8 | Minus |
| 2L | 23513712 | 2L | 4839579..4839991 | 209..621 | 850 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:06:45 has no hits.
BO09056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:39 Download gff for
BO09056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 1..1437 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:58 Download gff for
BO09056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 524..1964 | 10..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:15 Download gff for
BO09056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 515..1948 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:23 Download gff for
BO09056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 531..1964 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:44 Download gff for
BO09056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8602-RA | 515..1948 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:44 Download gff for
BO09056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7326893..7328328 | 17..1452 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:15 Download gff for
BO09056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7319993..7321428 | 17..1452 | 99 | | Minus |
BO09056.pep Sequence
Translation from 16 to 1468
> BO09056.pep
MAREDEERIVDNEEVSRPTEEDQVVSRAGRRDNELSLPSGGCCMPSSTSH
RFMALVFMCLLGFGSYFCYDAPGALQNYFKKDLNLTSAQFTLIYSIYSWP
NVVLCFVGGFLIDRLFGIRLGTIIYMMILLVGQLIFACGGILDAFWMMIL
GRFIFGIGAESLAVAQNSYAVLWFKGKELNMVFGLQLSVARFGSTVNFWV
MQPIYEYVSNFYKGHTALGVVLLLATLTCVMSMTCALILGWMDKRAERIL
QRNNNPAGQIPKLTDVFSFKPPFWMVSIICVAYYVAIFPFIALGQNFFVD
RFGLSPAEANTVDSLVYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIG
AHALLTFTQLTPYVGMIIMGLSYSMLAASLWPLVALIIPEYQLGTAYGFC
QSIQNLGLAVITIVAGIIVDHSGGEHMWLQLFFMGWLTIALISTGVIWAY
NNKNRGNLNMTPQQRAQFVSAENYQNFEASFLDH
BO09056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8602-PB | 478 | CG8602-PB | 1..478 | 1..478 | 2498 | 100 | Plus |
| CG8602-PA | 478 | CG8602-PA | 1..478 | 1..478 | 2498 | 100 | Plus |
| CG12194-PC | 485 | CG12194-PC | 1..485 | 1..480 | 1826 | 70 | Plus |
| CG12194-PA | 485 | CG12194-PA | 1..485 | 1..480 | 1826 | 70 | Plus |
| CG12194-PB | 496 | CG12194-PB | 1..474 | 1..468 | 1820 | 70.9 | Plus |
