Clone Sequence Records
BO09057.3prime Sequence
644 bp (643 high quality bases) assembled on 2006-01-10
> BO09057.3prime
ATGGTCTAGAAAGCTTGCCGCGCAGCACTTGCTGTAGCCCGGCGCCTTCT
CCTGGTTCCGGCGATCGATAATCACGCGCTCCTGATTCTCCGCCGACTCG
CGTCCTGATGTCTTGTCCAGAATGGCCTCGGCCAGCTCGCAGAAGGCCCG
CTCGATGTTTATGTTCGACTTGGCGGATGTTTCCATAAACCGAATGCCAT
GTTCACGGGCAATCGCTTCGCCGCGCTCCTTGTTGACCACCCTCTTGTCC
GTCATATCGCACTTGTTGCCGAGGATCATCTTCTCCACATCCTCGTTGGC
GTGCTCGTCTATATTCCGTAACCATTTGACTATGTTCTCGAAACTCTTCT
CGTTCGTTATGTCATAGACCAGCATTATGCCCATGGCGCCTCGATAGTAC
GAGGTGGTTATCGTGTGGAACCGCTCCTGGCCGGCGGTGTCCCATATTTG
CAGCTTGATCTTCTTGCCGCGCAGCTCGACTGTTTTGATTTTGAAATCGA
TGCCTATGGTCGATATGAACGTGGACGTGAATGCATCATCCGAGAACCGG
AACAATATGCACGTCTTGCCCACTCCTGAATCACCGATCAGCAACAGTTT
AAAGAGCAAATCGTAGGTTTTCTTTGCCATGTCGACTGATAACT
BO09057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17060-PA | 615 | Rab10-RA | 1..612 | 630..19 | 3060 | 100 | Minus |
CG9100-PA | 672 | Rab30-RA | 161..208 | 464..417 | 190 | 95.8 | Minus |
CG9100-PB | 672 | Rab30-RB | 161..208 | 464..417 | 190 | 95.8 | Minus |
CG9100-PC | 672 | Rab30-RC | 161..208 | 464..417 | 190 | 95.8 | Minus |
CG8287-PA | 624 | Rab8-RA | 162..206 | 466..422 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 2336 | CG17060-RA | 294..905 | 630..19 | 3060 | 100 | Minus |
Rab8-RC | 2043 | CG8287-RC | 581..1033 | 621..169 | 540 | 74.9 | Minus |
Rab8-RA | 2263 | CG8287-RA | 581..1033 | 621..169 | 540 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20252236..20252437 | 505..304 | 1010 | 100 | Minus |
X | 23542271 | X | 20253065..20253260 | 214..19 | 980 | 100 | Minus |
X | 23542271 | X | 20251631..20251758 | 630..503 | 640 | 100 | Minus |
X | 23542271 | X | 20252506..20252597 | 305..214 | 460 | 100 | Minus |
3L | 28110227 | 3L | 19869109..19869308 | 244..443 | 250 | 75 | Plus |
3L | 28110227 | 3L | 19870380..19870498 | 503..621 | 220 | 79 | Plus |
2L | 23513712 | 2L | 7031898..7031949 | 417..468 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:26:19 has no hits.
BO09057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:38 Download gff for
BO09057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:31 Download gff for
BO09057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17060-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:42 Download gff for
BO09057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..908 | 15..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:17 Download gff for
BO09057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..908 | 15..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:17 Download gff for
BO09057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20253066..20253263 | 15..213 | 98 | | Minus |
X | 20251628..20251757 | 504..633 | 99 | -> | Minus |
X | 20252238..20252437 | 304..503 | 100 | -> | Minus |
X | 20252508..20252597 | 214..303 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:42 Download gff for
BO09057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20124140..20124337 | 15..213 | 98 | | Minus |
arm_X | 20123582..20123671 | 214..303 | 100 | -> | Minus |
arm_X | 20122702..20122831 | 504..633 | 99 | -> | Minus |
arm_X | 20123312..20123511 | 304..503 | 100 | -> | Minus |
BO09057.5prime Sequence
644 bp (643 high quality bases) assembled on 2006-01-10
> BO09057.5prime
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGGCAAGCTTTCTAGACC
BO09057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17060-PA | 615 | Rab10-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
CG9100-PA | 672 | Rab30-RA | 161..208 | 183..230 | 190 | 95.8 | Plus |
CG9100-PB | 672 | Rab30-RB | 161..208 | 183..230 | 190 | 95.8 | Plus |
CG9100-PC | 672 | Rab30-RC | 161..208 | 183..230 | 190 | 95.8 | Plus |
CG8287-PA | 624 | Rab8-RA | 162..206 | 181..225 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 2336 | CG17060-RA | 294..905 | 17..628 | 3060 | 100 | Plus |
Rab8-RC | 2043 | CG8287-RC | 581..1033 | 26..478 | 540 | 74.9 | Plus |
Rab8-RA | 2263 | CG8287-RA | 581..1033 | 26..478 | 540 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20252236..20252437 | 142..343 | 1010 | 100 | Plus |
X | 23542271 | X | 20253065..20253260 | 433..628 | 980 | 100 | Plus |
X | 23542271 | X | 20251631..20251758 | 17..144 | 640 | 100 | Plus |
X | 23542271 | X | 20252506..20252597 | 342..433 | 460 | 100 | Plus |
3L | 28110227 | 3L | 19869109..19869308 | 403..204 | 250 | 75 | Minus |
3L | 28110227 | 3L | 19870380..19870498 | 144..26 | 220 | 79 | Minus |
2L | 23513712 | 2L | 7031898..7031949 | 230..179 | 215 | 94.2 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:42:04 has no hits.
BO09057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:39 Download gff for
BO09057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:32 Download gff for
BO09057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17060-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:43 Download gff for
BO09057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..908 | 14..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:06 Download gff for
BO09057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..908 | 14..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:06 Download gff for
BO09057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20251628..20251757 | 14..143 | 99 | -> | Plus |
X | 20252508..20252597 | 344..433 | 100 | -> | Plus |
X | 20252238..20252437 | 144..343 | 100 | -> | Plus |
X | 20253066..20253263 | 434..632 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:43 Download gff for
BO09057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20122702..20122831 | 14..143 | 99 | -> | Plus |
arm_X | 20123312..20123511 | 144..343 | 100 | -> | Plus |
arm_X | 20123582..20123671 | 344..433 | 100 | -> | Plus |
arm_X | 20124140..20124337 | 434..632 | 98 | | Plus |
BO09057.complete Sequence
646 bp assembled on 2007-10-17
GenBank Submission: FJ631370
> BO09057.complete
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGGCAAGCTTTCTAGACCAT
BO09057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 615 | CG17060-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Rab8-RC | 624 | CG8287-PC | 7..384 | 26..403 | 525 | 75.9 | Plus |
Rab8-RA | 624 | CG8287-PA | 7..384 | 26..403 | 525 | 75.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 2336 | CG17060-RA | 294..905 | 17..628 | 3060 | 100 | Plus |
Rab8-RC | 2043 | CG8287-RC | 581..958 | 26..403 | 525 | 75.9 | Plus |
Rab8-RA | 2263 | CG8287-RA | 581..958 | 26..403 | 525 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20252236..20252437 | 142..343 | 1010 | 100 | Plus |
X | 23542271 | X | 20253065..20253260 | 433..628 | 980 | 100 | Plus |
X | 23542271 | X | 20251631..20251758 | 17..144 | 640 | 100 | Plus |
X | 23542271 | X | 20252506..20252597 | 342..433 | 460 | 100 | Plus |
3L | 28110227 | 3L | 19869109..19869308 | 403..204 | 250 | 75 | Minus |
3L | 28110227 | 3L | 19870380..19870498 | 144..26 | 220 | 79 | Minus |
2L | 23513712 | 2L | 7031898..7031949 | 230..179 | 215 | 94.2 | Minus |
3R | 32079331 | 3R | 24827498..24827577 | 270..191 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:48:10 has no hits.
BO09057.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:40 Download gff for
BO09057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:30 Download gff for
BO09057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 252..869 | 14..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:48 Download gff for
BO09057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 294..905 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:21 Download gff for
BO09057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 255..866 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:12 Download gff for
BO09057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 294..905 | 17..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:12 Download gff for
BO09057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20251631..20251757 | 17..143 | 100 | -> | Plus |
X | 20252238..20252437 | 144..343 | 100 | -> | Plus |
X | 20252508..20252597 | 344..433 | 100 | -> | Plus |
X | 20253066..20253260 | 434..630 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:48 Download gff for
BO09057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20122705..20122831 | 17..143 | 100 | -> | Plus |
arm_X | 20123312..20123511 | 144..343 | 100 | -> | Plus |
arm_X | 20123582..20123671 | 344..433 | 100 | -> | Plus |
arm_X | 20124140..20124334 | 434..630 | 98 | | Plus |
BO09057.pep Sequence
Translation from 16 to 646
> BO09057.pep
MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKT
VELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENI
VKWLRNIDEHANEDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFME
TSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEKAPGYS
KCCAASFLDH
BO09057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-PA | 204 | CG17060-PA | 1..204 | 1..204 | 1052 | 100 | Plus |
Rab8-PC | 207 | CG8287-PC | 3..181 | 4..182 | 706 | 76 | Plus |
Rab8-PA | 207 | CG8287-PA | 3..181 | 4..182 | 706 | 76 | Plus |
Rab1-PA | 205 | CG3320-PA | 8..193 | 6..190 | 551 | 57 | Plus |
Rab3-PA | 220 | CG7576-PA | 14..187 | 2..175 | 531 | 54 | Plus |