Clone BO09057 Report

Search the DGRC for BO09057

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptRab10-RA
Protein status:BO09057.pep: validated full length
Sequenced Size:646

Clone Sequence Records

BO09057.3prime Sequence

644 bp (643 high quality bases) assembled on 2006-01-10

> BO09057.3prime
ATGGTCTAGAAAGCTTGCCGCGCAGCACTTGCTGTAGCCCGGCGCCTTCT
CCTGGTTCCGGCGATCGATAATCACGCGCTCCTGATTCTCCGCCGACTCG
CGTCCTGATGTCTTGTCCAGAATGGCCTCGGCCAGCTCGCAGAAGGCCCG
CTCGATGTTTATGTTCGACTTGGCGGATGTTTCCATAAACCGAATGCCAT
GTTCACGGGCAATCGCTTCGCCGCGCTCCTTGTTGACCACCCTCTTGTCC
GTCATATCGCACTTGTTGCCGAGGATCATCTTCTCCACATCCTCGTTGGC
GTGCTCGTCTATATTCCGTAACCATTTGACTATGTTCTCGAAACTCTTCT
CGTTCGTTATGTCATAGACCAGCATTATGCCCATGGCGCCTCGATAGTAC
GAGGTGGTTATCGTGTGGAACCGCTCCTGGCCGGCGGTGTCCCATATTTG
CAGCTTGATCTTCTTGCCGCGCAGCTCGACTGTTTTGATTTTGAAATCGA
TGCCTATGGTCGATATGAACGTGGACGTGAATGCATCATCCGAGAACCGG
AACAATATGCACGTCTTGCCCACTCCTGAATCACCGATCAGCAACAGTTT
AAAGAGCAAATCGTAGGTTTTCTTTGCCATGTCGACTGATAACT

BO09057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17060-PA 615 Rab10-RA 1..612 630..19 3060 100 Minus
CG9100-PA 672 Rab30-RA 161..208 464..417 190 95.8 Minus
CG9100-PB 672 Rab30-RB 161..208 464..417 190 95.8 Minus
CG9100-PC 672 Rab30-RC 161..208 464..417 190 95.8 Minus
CG8287-PA 624 Rab8-RA 162..206 466..422 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 2336 CG17060-RA 294..905 630..19 3060 100 Minus
Rab8-RC 2043 CG8287-RC 581..1033 621..169 540 74.9 Minus
Rab8-RA 2263 CG8287-RA 581..1033 621..169 540 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20252236..20252437 505..304 1010 100 Minus
X 23542271 X 20253065..20253260 214..19 980 100 Minus
X 23542271 X 20251631..20251758 630..503 640 100 Minus
X 23542271 X 20252506..20252597 305..214 460 100 Minus
3L 28110227 3L 19869109..19869308 244..443 250 75 Plus
3L 28110227 3L 19870380..19870498 503..621 220 79 Plus
2L 23513712 2L 7031898..7031949 417..468 215 94.2 Plus
Blast to na_te.dros performed on 2015-02-11 23:26:19 has no hits.

BO09057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:38 Download gff for BO09057.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-PA 1..615 15..630 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:31 Download gff for BO09057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17060-PA 1..615 15..630 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:42 Download gff for BO09057.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..908 15..633 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:17 Download gff for BO09057.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..908 15..633 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:17 Download gff for BO09057.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20253066..20253263 15..213 98   Minus
X 20251628..20251757 504..633 99 -> Minus
X 20252238..20252437 304..503 100 -> Minus
X 20252508..20252597 214..303 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:42 Download gff for BO09057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20124140..20124337 15..213 98   Minus
arm_X 20123582..20123671 214..303 100 -> Minus
arm_X 20122702..20122831 504..633 99 -> Minus
arm_X 20123312..20123511 304..503 100 -> Minus

BO09057.5prime Sequence

644 bp (643 high quality bases) assembled on 2006-01-10

> BO09057.5prime
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGGCAAGCTTTCTAGACC

BO09057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17060-PA 615 Rab10-RA 1..612 17..628 3060 100 Plus
CG9100-PA 672 Rab30-RA 161..208 183..230 190 95.8 Plus
CG9100-PB 672 Rab30-RB 161..208 183..230 190 95.8 Plus
CG9100-PC 672 Rab30-RC 161..208 183..230 190 95.8 Plus
CG8287-PA 624 Rab8-RA 162..206 181..225 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 2336 CG17060-RA 294..905 17..628 3060 100 Plus
Rab8-RC 2043 CG8287-RC 581..1033 26..478 540 74.9 Plus
Rab8-RA 2263 CG8287-RA 581..1033 26..478 540 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20252236..20252437 142..343 1010 100 Plus
X 23542271 X 20253065..20253260 433..628 980 100 Plus
X 23542271 X 20251631..20251758 17..144 640 100 Plus
X 23542271 X 20252506..20252597 342..433 460 100 Plus
3L 28110227 3L 19869109..19869308 403..204 250 75 Minus
3L 28110227 3L 19870380..19870498 144..26 220 79 Minus
2L 23513712 2L 7031898..7031949 230..179 215 94.2 Minus
Blast to na_te.dros performed on 2015-02-02 09:42:04 has no hits.

BO09057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:39 Download gff for BO09057.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-PA 1..615 17..632 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:32 Download gff for BO09057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17060-PA 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:43 Download gff for BO09057.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..908 14..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:06 Download gff for BO09057.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..908 14..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:06 Download gff for BO09057.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20251628..20251757 14..143 99 -> Plus
X 20252508..20252597 344..433 100 -> Plus
X 20252238..20252437 144..343 100 -> Plus
X 20253066..20253263 434..632 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:43 Download gff for BO09057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20122702..20122831 14..143 99 -> Plus
arm_X 20123312..20123511 144..343 100 -> Plus
arm_X 20123582..20123671 344..433 100 -> Plus
arm_X 20124140..20124337 434..632 98   Plus

BO09057.complete Sequence

646 bp assembled on 2007-10-17

GenBank Submission: FJ631370

> BO09057.complete
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGGCAAGCTTTCTAGACCAT

BO09057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 615 CG17060-PA 1..612 17..628 3060 100 Plus
Rab8-RC 624 CG8287-PC 7..384 26..403 525 75.9 Plus
Rab8-RA 624 CG8287-PA 7..384 26..403 525 75.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 2336 CG17060-RA 294..905 17..628 3060 100 Plus
Rab8-RC 2043 CG8287-RC 581..958 26..403 525 75.9 Plus
Rab8-RA 2263 CG8287-RA 581..958 26..403 525 75.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20252236..20252437 142..343 1010 100 Plus
X 23542271 X 20253065..20253260 433..628 980 100 Plus
X 23542271 X 20251631..20251758 17..144 640 100 Plus
X 23542271 X 20252506..20252597 342..433 460 100 Plus
3L 28110227 3L 19869109..19869308 403..204 250 75 Minus
3L 28110227 3L 19870380..19870498 144..26 220 79 Minus
2L 23513712 2L 7031898..7031949 230..179 215 94.2 Minus
3R 32079331 3R 24827498..24827577 270..191 205 83.8 Minus
Blast to na_te.dros performed on 2014-11-28 00:48:10 has no hits.

BO09057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:40 Download gff for BO09057.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:30 Download gff for BO09057.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 252..869 14..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:48 Download gff for BO09057.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 294..905 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:21 Download gff for BO09057.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 255..866 17..630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:12 Download gff for BO09057.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 294..905 17..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:12 Download gff for BO09057.complete
Subject Subject Range Query Range Percent Splice Strand
X 20251631..20251757 17..143 100 -> Plus
X 20252238..20252437 144..343 100 -> Plus
X 20252508..20252597 344..433 100 -> Plus
X 20253066..20253260 434..630 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:48 Download gff for BO09057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20122705..20122831 17..143 100 -> Plus
arm_X 20123312..20123511 144..343 100 -> Plus
arm_X 20123582..20123671 344..433 100 -> Plus
arm_X 20124140..20124334 434..630 98   Plus

BO09057.pep Sequence

Translation from 16 to 646

> BO09057.pep
MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKT
VELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENI
VKWLRNIDEHANEDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFME
TSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEKAPGYS
KCCAASFLDH

BO09057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-PA 204 CG17060-PA 1..204 1..204 1052 100 Plus
Rab8-PC 207 CG8287-PC 3..181 4..182 706 76 Plus
Rab8-PA 207 CG8287-PA 3..181 4..182 706 76 Plus
Rab1-PA 205 CG3320-PA 8..193 6..190 551 57 Plus
Rab3-PA 220 CG7576-PA 14..187 2..175 531 54 Plus