Clone Sequence Records
BO09058.3prime Sequence
870 bp (834 high quality bases) assembled on 2006-01-10
> BO09058.3prime
ATGGTCTAGAAAGCTTGCTAAGCTGTAGCAATCTGATGCCGAGGATGCAC
TGCGTCTTCTCATTGCATTCGGATCTCTTTTGAGTAGATAAACGCACAGA
CACAGGCAGGCAAGGAGTAGGCACACCAATCCCAACATCGCATAGAATCC
CTGGCGGTAGCGTGCTGCATCGGCACTCGCTTCCAAGAGTCGTACCCGCT
GGCCCAGAGCTCCTCCTCCCCTCAAGTCCTCCTCTCTTTCCAGTGGCATT
AACACCTGCCAGAATCCGTAAACCATTTGCAAGTGATTGGAGTAGCCCGA
ATCCAGTTGATTGCTGGCCGTGTAGGAATTGGAGGGTGCTGCTCGATAGG
TATCGTGGCGGTTGCTACGCGATAAGCTTCTATCTAGCCCTGGAGCTCCT
GTCTCCCCTCTAAGTAGCTTATCCACCTCAGCCTCATCGACTGATCCTGT
CTGCGGCGTCTTTGCTTGCTCTCCCAAGCTATAAACGAATGGGTTCTCCT
TGTTGTACGGTAACCAGCCGTCGTATATCCGCCCCGGAGTGGGGTTGCCA
TTTTTAATGAAGTTCGCAAATGCTCCTCTTATTTTGCGACAGAGCTGCTC
CTCCTCGCCACTGAATCTTCGACGAGCTATCTGCTGAAACAGACTCGGAC
CGAGGAGAAGTGGGAGATCTGAGCTGTGGGAGGCTCCGCCAAAAAGATTT
CTTCTGCCTCGCATGTCCATCGAGTGGGAGTGGTCGAATACATAGGCATA
GCTAGTGGTTCCATTTAAAAGCTCCAAGATTCGTGAGTACGGTAACTCAT
AGAGTGATTCCGAGAGTAGTCGTTGCATTCCAGCCAGCAAGTGGCTGACA
CCCTCTCCCTTGCCATTGAA
BO09058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-PA | 2058 | CG12869-RA | 1204..2055 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 1421..2272 | 870..19 | 4260 | 100 | Minus |
| CG12869-RB | 3312 | CG12869-RB | 1899..2750 | 870..19 | 4260 | 100 | Minus |
| CG12869-RA | 2857 | CG12869-RA | 1444..2295 | 870..19 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14594204..14595055 | 870..19 | 4260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:08:24 has no hits.
BO09058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:40 Download gff for
BO09058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1206..2058 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:33 Download gff for
BO09058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1206..2058 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:44 Download gff for
BO09058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 1444..2295 | 19..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:30 Download gff for
BO09058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 1444..2295 | 19..870 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:30 Download gff for
BO09058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14594204..14595055 | 19..870 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:44 Download gff for
BO09058.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10481709..10482560 | 19..870 | 100 | | Minus |
BO09058.5prime Sequence
874 bp (786 high quality bases) assembled on 2006-01-10
> BO09058.5prime
GAAGTTATCAGTCGACATGTGGAATGCATTAAGGATTCAGCAGATTTTGC
GTCTACTCCCGATCCTGATTCACCTGTCGCCATACATTTCCGCCCAACAG
ACGCACATTAAATTGGAGCAAGGGGATCTCATTGGGCTCAAGGTCTTTCC
GGATGGGACACGTGGCGCTGTCTACGCCTTTCTGGGCATTCCCTACGCCC
AGGCGCCCATCAACGAACTACGATTTGCTCCCGCCAAGCCGAGCTCCAGC
TTCAACCGCACCCTCCAGGCCACCACCATGCAGCCGCTGTGCCCGCAGCT
CGCGAACACCATCTACGACGAGAGCTCCGATGGCTCCATGCCCAGATCAG
TGAGCACCGACGAGGACTGCCTGTACCTGAACATTTGGACACCGGAATCG
GGAATGCGGTACGGCAAGCTGCCCATAGTGGTCATTGTCACGGGTGAGGA
GTTTGCCTACGACTGGCCCAGAAATCGCATCAATGGCTTGGATCTGGCCG
GAGAGGGCATTGTGGTAGTCAGTGTCCAGTACCGAAATAATATCTACGGA
TGGCTGAGTCTAGGCGAACAGCATCGTAATGTGCCTGGAAATTATGGCCT
AAGTGATGTTCAGATGGCACTGCGGTGGATTCGAAGGAATGCAGATGCCT
TTGGCGGCAATCCAGATCACATTACTCTTCTGGGTCATGGGAGTGGAGGA
GCACCTCTGGCACTAGTTGCTACTTTGGAGGATTCCAGCCAGGTTAAACA
ACTGGTGCTCATGTCACCCGGTCCCATTATGCGAGCCTTGGGTCAGAATC
ACCAAAAATGGATAGTGGAAACTGGTCAAGTGCTGGTACAGAAATTGGGC
TGCCAATTTGAGGAGGCACAACGT
BO09058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-PA | 2058 | CG12869-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 217..1075 | 16..874 | 4295 | 100 | Plus |
| CG12869-RB | 3312 | CG12869-RB | 695..1553 | 16..874 | 4295 | 100 | Plus |
| CG12869-RA | 2857 | CG12869-RA | 240..1098 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14593214..14593858 | 230..874 | 3225 | 100 | Plus |
| 2R | 25286936 | 2R | 14592761..14592881 | 16..136 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 14592950..14593043 | 136..229 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:43:52 has no hits.
BO09058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:42 Download gff for
BO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:34 Download gff for
BO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:21 Download gff for
BO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 240..1098 | 16..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:52 Download gff for
BO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 240..1098 | 16..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:52 Download gff for
BO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14592761..14592881 | 16..136 | 100 | -> | Plus |
| 2R | 14592951..14593043 | 137..229 | 100 | -> | Plus |
| 2R | 14593214..14593858 | 230..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:21 Download gff for
BO09058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10480266..10480386 | 16..136 | 100 | -> | Plus |
| arm_2R | 10480456..10480548 | 137..229 | 100 | -> | Plus |
| arm_2R | 10480719..10481363 | 230..874 | 100 | | Plus |
BO09058.complete Sequence
2089 bp (2089 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631371
> BO09058.complete
GAAGTTATCAGTCGACATGTGGAATGCATTAAGGATTCAGCAGATTTTGC
GTCTACTCCCGATCCTGATTCACCTGTCGCCATACATTTCCGCCCAACAG
ACGCACATTAAATTGGAGCAAGGGGATCTCATTGGGCTCAAGGTCTTTCC
GGATGGGACACGTGGCGCTGTCTACGCCTTTCTGGGCATTCCCTACGCCC
AGGCGCCCATCAACGAACTACGATTTGCTCCCGCCAAGCCGAGCTCCAGC
TTCAACCGCACCCTCCAGGCCACCACCATGCAGCCGCTGTGCCCGCAGCT
CGCGAACACCATCTACGACGAGAGCTCCGATGGCTCCATGCCCAGATCAG
TGAGCACCGACGAGGACTGCCTGTACCTGAACATTTGGACACCGGAATCG
GGAATGCGGTACGGCAAGCTGCCCATAGTGGTCATTGTCACGGGTGAGGA
GTTTGCCTACGACTGGCCCAGAAATCGCATCAATGGCTTGGATCTGGCCG
GAGAGGGCATTGTGGTAGTCAGTGTCCAGTACCGAAATAATATCTACGGA
TGGCTGAGTCTAGGCGAACAGCATCGTAATGTGCCTGGAAATTATGGCCT
AAGTGATGTTCAGATGGCACTGCGGTGGATTCGAAGGAATGCAGATGCCT
TTGGCGGCAATCCAGATCACATTACTCTTCTGGGTCATGGGAGTGGAGGA
GCACCTCTGGCACTAGTTGCTACTTTGGAGGATTCCAGCCAGGTTAAACA
ACTGGTGCTCATGTCACCCGGTCCCATTATGCGAGCCTTGGGTCAGAATC
ACCAAAAATGGATAGTGGAAACTGGTCAAGTGCTGGTACAGAAATTGGGC
TGCCAATTTGAGGAGGCACAACGTCGCCAGTTGATGGGTTGTCTGAGGCG
CAAGAGCCGGGAGGACTTGCTCCGTGCATACGAAAGCGTTTATAACCATG
GCAACGGAAGCTCCCAGCTGGGAGTAATACTACCCGAAGGATTGCCACTC
GAACAACGCCTTCGTAACAAAACATTGCCCCCCGTACTGCTGGGCATCAC
CTCCAACGAAGGAGCCTTCCTGCAGGACTACTGGCTGGACGTGGCCAGGG
AGGGTCAGGTGGCGCTACATAAGTACATCAATCACACATTGTTGCCGAAT
GTGATGCGAGCACTGGAGTCGGTGGGTGAGGAGAGCTCCACGCAACTGGC
GGCCATTAGATGGAGGTACTTCAATGGCAAGGGAGAGGGTGTCAGCCACT
TGCTGGCTGGAATGCAACGACTACTCTCGGAATCACTCTATGAGTTACCG
TACTCACGAATCTTGGAGCTTTTAAATGGAACCACTAGCTATGCCTATGT
ATTCGACCACTCCCACTCGATGGACATGCGAGGCAGAAGAAATCTTTTTG
GCGGAGCCTCCCACAGCTCAGATCTCCCACTTCTCCTCGGTCCGAGTCTG
TTTCAGCAGATAGCTCGTCGAAGATTCAGTGGCGAGGAGGAGCAGCTCTG
TCGCAAAATAAGAGGAGCATTTGCGAACTTCATTAAAAATGGCAACCCCA
CTCCGGGGCGGATATACGACGGCTGGTTACCGTACAACAAGGAGAACCCA
TTCGTTTATAGCTTGGGAGAGCAAGCAAAGACGCCGCAGACAGGATCAGT
CGATGAGGCTGAGGTGGATAAGCTACTTAGAGGGGAGACAGGAGCTCCAG
GGCTAGATAGAAGCTTATCGCGTAGCAACCGCCACGATACCTATCGAGCA
GCACCCTCCAATTCCTACACGGCCAGCAATCAACTGGATTCGGGCTACTC
CAATCACTTGCAAATGGTTTACGGATTCTGGCAGGTGTTAATGCCACTGG
AAAGAGAGGAGGACTTGAGGGGAGGAGGAGCTCTGGGCCAGCGGGTACGA
CTCTTGGAAGCGAGTGCCGATGCAGCACGCTACCGCCAGGGATTCTATGC
GATGTTGGGATTGGTGTGCCTACTCCTTGCCTGCCTGTGTCTGTGCGTTT
ATCTACTCAAAAGAGATCCGAATGCAATGAGAAGACGCAGTGCATCCTCG
GCATCAGATTGCTACAGCTTAGCAAGCTTTCTAGACCAT
BO09058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2058 | CG12869-PC | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| CG12869-RB | 2058 | CG12869-PB | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| CG12869-RA | 2058 | CG12869-PA | 1..2055 | 17..2071 | 10275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-RC | 2834 | CG12869-RC | 217..2272 | 16..2071 | 10280 | 100 | Plus |
| CG12869-RB | 3312 | CG12869-RB | 695..2750 | 16..2071 | 10280 | 100 | Plus |
| CG12869-RA | 2857 | CG12869-RA | 240..2295 | 16..2071 | 10280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14593214..14595055 | 230..2071 | 9210 | 100 | Plus |
| 2R | 25286936 | 2R | 14592761..14592881 | 16..136 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 14592950..14593043 | 136..229 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:38 has no hits.
BO09058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:03 Download gff for
BO09058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 1..2058 | 17..2074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:07 Download gff for
BO09058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 240..2295 | 16..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:47 Download gff for
BO09058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 241..2295 | 17..2073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:03 Download gff for
BO09058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 240..2295 | 16..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:15 Download gff for
BO09058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12869-RA | 241..2295 | 17..2073 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:15 Download gff for
BO09058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14592762..14592881 | 17..136 | 100 | -> | Plus |
| 2R | 14592951..14593043 | 137..229 | 100 | -> | Plus |
| 2R | 14593214..14595055 | 230..2073 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:47 Download gff for
BO09058.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10480267..10480386 | 17..136 | 100 | -> | Plus |
| arm_2R | 10480456..10480548 | 137..229 | 100 | -> | Plus |
| arm_2R | 10480719..10482560 | 230..2073 | 99 | | Plus |
BO09058.pep Sequence
Translation from 16 to 2089
> BO09058.pep
MWNALRIQQILRLLPILIHLSPYISAQQTHIKLEQGDLIGLKVFPDGTRG
AVYAFLGIPYAQAPINELRFAPAKPSSSFNRTLQATTMQPLCPQLANTIY
DESSDGSMPRSVSTDEDCLYLNIWTPESGMRYGKLPIVVIVTGEEFAYDW
PRNRINGLDLAGEGIVVVSVQYRNNIYGWLSLGEQHRNVPGNYGLSDVQM
ALRWIRRNADAFGGNPDHITLLGHGSGGAPLALVATLEDSSQVKQLVLMS
PGPIMRALGQNHQKWIVETGQVLVQKLGCQFEEAQRRQLMGCLRRKSRED
LLRAYESVYNHGNGSSQLGVILPEGLPLEQRLRNKTLPPVLLGITSNEGA
FLQDYWLDVAREGQVALHKYINHTLLPNVMRALESVGEESSTQLAAIRWR
YFNGKGEGVSHLLAGMQRLLSESLYELPYSRILELLNGTTSYAYVFDHSH
SMDMRGRRNLFGGASHSSDLPLLLGPSLFQQIARRRFSGEEEQLCRKIRG
AFANFIKNGNPTPGRIYDGWLPYNKENPFVYSLGEQAKTPQTGSVDEAEV
DKLLRGETGAPGLDRSLSRSNRHDTYRAAPSNSYTASNQLDSGYSNHLQM
VYGFWQVLMPLEREEDLRGGGALGQRVRLLEASADAARYRQGFYAMLGLV
CLLLACLCLCVYLLKRDPNAMRRRSASSASDCYSLASFLDH
BO09058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12869-PC | 685 | CG12869-PC | 1..685 | 1..685 | 3582 | 100 | Plus |
| CG12869-PB | 685 | CG12869-PB | 1..685 | 1..685 | 3582 | 100 | Plus |
| CG12869-PA | 685 | CG12869-PA | 1..685 | 1..685 | 3582 | 100 | Plus |
| CG6414-PA | 583 | CG6414-PA | 14..522 | 13..516 | 348 | 27.6 | Plus |
| Gli-PF | 956 | CG3903-PF | 169..657 | 46..516 | 342 | 27.4 | Plus |
