Clone Sequence Records
BO09059.3prime Sequence
941 bp (776 high quality bases) assembled on 2006-01-10
> BO09059.3prime
ATGGTCTAGAAAGCTTGCCAGCTTTCCCCGCATCATGGGCAACAAGTGGT
TGTGGAAGGACGAGTTGACCGGCTCCTGGTTGATCGGATTTCGGCGTGCC
TCCTCCATGAGACGCTCGTACACCCGGCCATCGTGACACCCCAGCGTGGA
GCCCAGGACACGATCGTGAAAATCGAATCCATCCACCAGAGCCACCGCAT
TGGGTCGCAGCTTGGCCAGCAGCTCCTCAAAGCGACGCTCCACGAAGCGC
AGTTGGGTGCCAGTGATGCCGTTGTTCCAACGCAGCACGCATCCCGACTG
TCGCAGGAATGTATCGATGACGAAAAGCTCAACCAGTTGGCCCAAGATGA
GTGAGACATTCGGGCTAAGATCGCCCTTCTTTCGAAGTGCTTCCACTTGC
TCCAGTGCATTGCGTGTGAAGAATGCGTGAGCATGGGCTATGGCAGCCGA
GGTGAGCTGCCTTCCAGCCAGATTGCTGGCCATCTCGGGACTCACCTTGC
CGGATTGGTGCATCTTCTGGGTCTGCCAAGCATCACGCACCTGCTCCATG
GCTGAAATCTCCAGCGCTCGCACACAATTCGCAACCAGATTCTTGCCCCA
AATCAAACGGGCTGTATCCCTCAAATAGGAGACACTGGAGGGCAGCACCT
TGCGTTTTAAGCTATCCGCATACTGCCGGACGAGGAAACGAGCTGTCTGG
AGCAGGAGTACTGTGTACTCTCCCTCGTAGGTGTATGTGGCGGCGGTCAG
ACCATAGATGCTATCGAAATTCGCCGAGGAAAGGAATCCGTGGCCACCGC
AACTCTTGCGCAGCAGATCAACTCCCTCGCTGGCCTCGTCGGTGGCCACC
GCCTTGAGGCAGCAGCTCAGGGCGTGCAGCTCCGGCAGGGAAGTGCGTCC
TTTCGTGCTTTCATCCTCCAGTTGGCGGAGTACGTCCTCGT
BO09059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-PA | 2034 | CG4586-RA | 1109..2031 | 941..19 | 4565 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-RA | 2240 | CG4586-RA | 1209..2131 | 941..19 | 4585 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6971234..6972156 | 941..19 | 4585 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:58:58 has no hits.
BO09059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:42 Download gff for
BO09059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-PA | 1109..2034 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:35 Download gff for
BO09059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-PA | 1109..2034 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:39:01 Download gff for
BO09059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 1210..2132 | 19..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:45 Download gff for
BO09059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 1209..2131 | 19..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:45 Download gff for
BO09059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6971234..6972156 | 19..941 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:39:01 Download gff for
BO09059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6865267..6866189 | 19..941 | 99 | | Minus |
BO09059.5prime Sequence
960 bp (756 high quality bases) assembled on 2006-01-10
> BO09059.5prime
GAAGTTATCAGTCGACATGTCTGTGAATGCGGATCTGCAGAGAGAGCGGG
CGGCGGCCACCTTGGACAGCGAGGACTTTGCCCGCTGGTGGGCGGGTGGC
TCTGGGCAGCTGGAGGAGCGCCGCGCCCTGGAAAGGCGTTTCTATGAGGA
TCCCGACTTCGCGGAGCCAGTGCATCCGAGCTGTCTGTCATACAAGGAGC
GCTACGAACAGACCGTGGCCCGATCCACACGCTTCCTGGCCAAACTGCGC
CAATGGCAGCGGGAGAAGCAGCCACAACTTCAGCTTAGTGTGAATATGCT
GAGGGACTTTCGGCTGCTACTCTCCGGATCCCTGGGCACGGGCCTCTTCC
AGCAGAGCTTCCCCCTTCGGGTGCATTTCTCCATGTTCATGACCACCTTG
CTGAGCCAGGGAACCGAGGAGCAGCAGGCCCAGTGGCTCAATCGATCCTG
GCACATGGACGGCGTCCTGGGCACCTATGCGCAAACGGAGCTGGGTCACG
GCACCTTTGTCCGGGGCCTGGAAACCCGAGCCGACTACGATCCCATCACG
CAGGAATTCATCCTGAACACCCCAACGCAAAGTTCATACAAGTGGTGGCC
CGGCGGACTTGGTAATACCGCCAATGTGGCCATTGTGCTGGCCCAGCTAT
ATGTGAAGGGCAAGCATTATGGCTTGCAATCATTTGTGGTGAGGATCAGG
GACGAGAGGACACACGAACCGTTGACTGGAGTCGATGTGGGCGATATAGG
ACCTCGCCTGGGTGGCAATGGCGTTAACAACGGCTTTCTGGGACTCCGCG
ACGTGCGGATACCGCGCAATCAAATGCTGATGAAGAACGCCCAAGTCCTG
ACCGACGGCACCTTCGTCCAGGGTAGACCTCCGCTGCTGCTCTACGGCAC
AATGGTCTATGTGCGGGTAAATACCGTGAAGGATGTGCTCTTTGGACTGC
TCCANGCTGC
BO09059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-PA | 2034 | CG4586-RA | 1..944 | 17..960 | 4676 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-RA | 2240 | CG4586-RA | 100..1044 | 16..960 | 4699 | 99.8 | Plus |
| CG5009-RA | 2506 | CG5009-RA | 765..902 | 470..607 | 255 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6970017..6970961 | 16..960 | 4699 | 99.8 | Plus |
| 2R | 25286936 | 2R | 17762497..17762634 | 470..607 | 255 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:22:01 has no hits.
BO09059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:43 Download gff for
BO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-PA | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:37 Download gff for
BO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-PA | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:58 Download gff for
BO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 89..1045 | 3..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:58 Download gff for
BO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 88..1044 | 3..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:58 Download gff for
BO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6970005..6970961 | 3..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:58 Download gff for
BO09059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6864038..6864994 | 3..960 | 99 | | Plus |
BO09059.complete Sequence
2065 bp (2065 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631372
> BO09059.complete
GAAGTTATCAGTCGACATGTCTGTGAATGCGGATCTGCAGAGAGAGCGGG
CGGCGGCCACCTTGGACAGCGAGGACTTTGCCCGCTGGTGGGCGGGTGGC
TCTGGGCAGCTGGAGGAGCGCCGCGCCCTGGAAAGGCGTTTCTATGAGGA
TCCCGACTTCGCGGAGCCAGTGCATCCGAGCTGTCTGTCATACAAGGAGC
GCTACGAACAGACCGTGGCCCGATCCACACGCTTCCTGGCCAAACTGCGC
CAATGGCAGCGGGAGAAGCAGCCACAACTTCAGCTTAGTGTGAATATGCT
GAGGGACTTTCGGCTGCTACTCTCCGGATCCCTGGGCACGGGCCTCTTCC
AGCAGAGCTTCCCCCTTCGGGTGCATTTCTCCATGTTCATGACCACCTTG
CTGAGCCAGGGAACCGAGGAGCAGCAGGCCCAGTGGCTCAATCGATCCTG
GCACATGGACGGCGTCCTGGGCACCTATGCGCAAACGGAGCTGGGTCACG
GCACCTTTGTCCGGGGCCTGGAAACCCGAGCCGACTACGATCCCATCACG
CAGGAATTCATCCTGAACACCCCAACGCAAAGTTCATACAAGTGGTGGCC
CGGCGGACTTGGTAATACCGCCAATGTGGCCATTGTGCTGGCCCAGCTAT
ATGTGAAGGGCAAGCATTATGGCTTGCAATCATTTGTGGTGAGGATCAGG
GACGAGAGGACACACGAACCGTTGACTGGAGTCGATGTGGGCGATATAGG
ACCTCGCCTGGGTGGCAATGGCGTTAACAACGGCTTTCTGGGACTCCGCG
ACGTGCGGATACCGCGCAATCAAATGCTGATGAAGAACGCCCAAGTCCTG
ACCGACGGCACCTTCGTCCAGGGTAGACCTCCGCTGCTGCTCTACGGCAC
AATGGTCTATGTGCGGGTAATTACCGTGAAGGATGTGCTCTTTGGACTGC
TCCAGGCTGCCACCATTGCCACCAGGTATTCCGTGGTGCGTCGCCAGAGC
CGGATTAACAGCGATCAGCCGGAGGTCTCTGTTTTGGATCACATCACACA
GCAGGCAAAGATTCTACCGCAAATTGCTCGAGGAGTGTCCTATCGCCTGG
TATCCGATTGGCTGTGGCGCTTCTACGAGGACGTACTCCGCCAACTGGAG
GATGAAAGCACGAAAGGACGCAACTCCCTGCCGGAGCTGCACGCCCTGAG
CTGCTGCCTCAAGGCGGTGGCCACCGACGAGGCCAGCGAGGGAGTTGATC
TGCTGCGCAAGAGTTGCGGTGGCCACGGATTCCTTTCCTCGGCGAATTTC
GATAGCATCTATGGTCTGACCGCCGCCACATACACCTACGAGGGAGAGTA
CACAGTACTCCTGCTCCAGACAGCTCGTTTCCTCGTCCGGCAGTATGCGG
ATAGCTTAAAACGCAAGGTGCTGCCCTCCAGTGTCTCCTATTTGAGGGAT
ACAGCCCGTTTGATTTGGGGCAAGAATCTGGTTGCGAATTGTGTGCGAGC
GCTGGAGATTTCAGCCATGGAGCAGGTGCGTGATGCTTGGCAGACCCAGA
AGATGCACCAATCCGGCAAGGTGAGTCCCGAGATGGCCAGCAATCTGGCT
GGAAGGCAGCTCACCTCGGCTGCCATAGCCCATGCTCACGCATTCTTCAC
ACGCAATGCACTGGAGCAAGTGGAAGCACTTCGAAAGAAGGGCGATCTTA
GCCCGAATGTCTCACTCATCTTGGGCCAACTGGTTGAGCTTTTCGTCATC
GATACATTCCTGCGACAGTCGGGATGCGTGCTGCGTTGGAACAACGGCAT
CACTGGCACCCAACTGCGCTTCGTGGAGCGTCGCTTTGAGGAGCTGCTGG
CCAAGCTGCGACCCAATGCGGTGGCTCTGGTGGATGGATTCGATTTTCAC
GATCGTGTCCTGGGCTCCACGCTGGGGTGTCACGATGGCCGGGTGTACGA
GCGTCTCATGGAGGAGGCACGCCGAAATCCGATCAACCAGGAGCCGGTCA
ACTCGTCCTTCCACAACCACTTGTTGCCCATGATGCGGGGAAAGCTGGCA
AGCTTTCTAGACCAT
BO09059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-RA | 2034 | CG4586-PA | 1..2031 | 17..2047 | 10155 | 100 | Plus |
| CG5009-RA | 2010 | CG5009-PA | 439..576 | 470..607 | 255 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-RA | 2240 | CG4586-RA | 100..2131 | 16..2047 | 10160 | 100 | Plus |
| CG5009-RA | 2506 | CG5009-RA | 765..902 | 470..607 | 255 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6971083..6972156 | 974..2047 | 5370 | 100 | Plus |
| X | 23542271 | X | 6970017..6970978 | 16..977 | 4810 | 100 | Plus |
| 2R | 25286936 | 2R | 17762497..17762634 | 470..607 | 255 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:09:19 has no hits.
BO09059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:36 Download gff for
BO09059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 1..2034 | 17..2050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:38 Download gff for
BO09059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 65..2108 | 3..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:06 Download gff for
BO09059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 102..2132 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:36 Download gff for
BO09059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 65..2108 | 3..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:24 Download gff for
BO09059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 101..2131 | 17..2049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:24 Download gff for
BO09059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6970018..6970976 | 17..975 | 100 | -> | Plus |
| X | 6971085..6972156 | 976..2049 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:06 Download gff for
BO09059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6864051..6865009 | 17..975 | 100 | -> | Plus |
| arm_X | 6865118..6866189 | 976..2049 | 99 | | Plus |
BO09059.pep Sequence
Translation from 16 to 2065
> BO09059.pep
MSVNADLQRERAAATLDSEDFARWWAGGSGQLEERRALERRFYEDPDFAE
PVHPSCLSYKERYEQTVARSTRFLAKLRQWQREKQPQLQLSVNMLRDFRL
LLSGSLGTGLFQQSFPLRVHFSMFMTTLLSQGTEEQQAQWLNRSWHMDGV
LGTYAQTELGHGTFVRGLETRADYDPITQEFILNTPTQSSYKWWPGGLGN
TANVAIVLAQLYVKGKHYGLQSFVVRIRDERTHEPLTGVDVGDIGPRLGG
NGVNNGFLGLRDVRIPRNQMLMKNAQVLTDGTFVQGRPPLLLYGTMVYVR
VITVKDVLFGLLQAATIATRYSVVRRQSRINSDQPEVSVLDHITQQAKIL
PQIARGVSYRLVSDWLWRFYEDVLRQLEDESTKGRNSLPELHALSCCLKA
VATDEASEGVDLLRKSCGGHGFLSSANFDSIYGLTAATYTYEGEYTVLLL
QTARFLVRQYADSLKRKVLPSSVSYLRDTARLIWGKNLVANCVRALEISA
MEQVRDAWQTQKMHQSGKVSPEMASNLAGRQLTSAAIAHAHAFFTRNALE
QVEALRKKGDLSPNVSLILGQLVELFVIDTFLRQSGCVLRWNNGITGTQL
RFVERRFEELLAKLRPNAVALVDGFDFHDRVLGSTLGCHDGRVYERLMEE
ARRNPINQEPVNSSFHNHLLPMMRGKLASFLDH
BO09059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-PA | 677 | CG4586-PA | 1..677 | 1..677 | 3505 | 100 | Plus |
| CG5009-PA | 669 | CG5009-PA | 6..669 | 3..677 | 1588 | 45.1 | Plus |
| Acox57D-d-PA | 677 | CG9709-PA | 11..677 | 2..677 | 1379 | 43 | Plus |
| Acox57D-p-PB | 677 | CG9707-PB | 11..677 | 2..677 | 1313 | 42.5 | Plus |
| Acox57D-p-PA | 677 | CG9707-PA | 11..677 | 2..677 | 1313 | 42.5 | Plus |
