Clone Sequence Records
BO09060.3prime Sequence
964 bp (786 high quality bases) assembled on 2006-01-10
> BO09060.3prime
ATGGTCTAGAAAGCTTGCATCTAGATTATCCTGGAATATTAACTTTATGT
AGCCAGTCGCTCCATCCAAGGGCGTCGCACAGAAGGGACAGACGGCCTGA
AATCCGTTGGTACCGTGAGGTATCTCCACATTGGCCCAGTATTTGACAGT
TTTTTCAGTCGCCATGTGTCCGCATGGATTGAACGCGTACGTCGGGGCGC
CCACGTCCACATAGAAGGCTGGTTCCAAGCCCATGCACAGGGTGACCACC
GGACCGAGTTCCAGGCACATCGGACAGCGGCGGGCGCCAGTGTTCTCATC
CTGACCCCAATCGTGATGGCCCTGGACATGGCCACAGTTTAAGTACACGT
AAGGCTGGTTCACCTGATCCCCAATGTTAACTTTGCGTGGTATAACCAGC
GTGTTCAGGCCCACCGGGCACTGTGGACGACCGGCATTAATGGCATCGAT
AAGTTTCTCCAAATCGTGTTTGGTCGGCGAATGCTGCAAGCCCTCGGCGG
AACGCCAAAGCAAGGTTGCGCCGCAGAGATCAATAAGTGTGCCATCCTGC
AGAATGTTGCATTCGTCATAGATCGGCTGCCCCTTTTGCTGGGCTGAACG
CGATTCGCGAAGGCTGAAAACGTCGCCGCCCACGGAGCACTCGCGCCATA
GTCCGCACTTGGCATTGCCGCCACAGAAGGATCCTTTGGGGTGCATAATC
AGCACACCGTTGGTGGTCAGGCCATCGATTTCCACATTGTCCTGCCACTT
GGTGGCCTTCTCCCCAAGGAATATATTTCTGCTCGAATCNAAGCCGGCAG
CGAATATTCTCGCCTTGGCAGGCTCACAGCGGTTGACCAGAATGCGGCAG
GCGAACCGAGAAATTGTGCTCTGCATACCCTTGGCATCCTTTTTATCGCT
GGCAGCGTATCCATCACCCACAAGTCAATGGGTGACTCCGATGAGCGTCC
CACTGAAACATGTC
BO09060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5212-PA | 1275 | Pli-RA | 392..1272 | 899..19 | 4361 | 99.7 | Minus |
CG5212-PA | 1275 | Pli-RA | 337..368 | 953..922 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 2903 | CG5212-RB | 736..1683 | 964..19 | 4619 | 99.4 | Minus |
Pli-RA | 1844 | CG5212-RA | 808..1755 | 964..19 | 4619 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23862194..23862383 | 574..763 | 950 | 100 | Plus |
3R | 32079331 | 3R | 23861577..23861755 | 143..321 | 895 | 100 | Plus |
3R | 32079331 | 3R | 23862449..23862641 | 762..953 | 844 | 96.9 | Plus |
3R | 32079331 | 3R | 23861814..23861969 | 320..475 | 780 | 100 | Plus |
3R | 32079331 | 3R | 23861382..23861505 | 19..142 | 620 | 100 | Plus |
3R | 32079331 | 3R | 23862031..23862130 | 475..574 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:58:46 has no hits.
BO09060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:44 Download gff for
BO09060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-PA | 325..1275 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:38 Download gff for
BO09060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5212-PA | 325..1275 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:58 Download gff for
BO09060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 808..1758 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:43 Download gff for
BO09060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 808..1758 | 15..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:43 Download gff for
BO09060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23861378..23861505 | 15..142 | 98 | <- | Plus |
3R | 23861577..23861754 | 143..320 | 100 | <- | Plus |
3R | 23861815..23861968 | 321..474 | 100 | <- | Plus |
3R | 23862031..23862129 | 475..573 | 100 | <- | Plus |
3R | 23862194..23862382 | 574..762 | 100 | <- | Plus |
3R | 23862450..23862641 | 763..953 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:58 Download gff for
BO09060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19687100..19687227 | 15..142 | 98 | <- | Plus |
arm_3R | 19687299..19687476 | 143..320 | 100 | <- | Plus |
arm_3R | 19687537..19687690 | 321..474 | 100 | <- | Plus |
arm_3R | 19687753..19687851 | 475..573 | 100 | <- | Plus |
arm_3R | 19687916..19688104 | 574..762 | 100 | <- | Plus |
arm_3R | 19688172..19688363 | 763..953 | 97 | | Plus |
BO09060.5prime Sequence
910 bp (864 high quality bases) assembled on 2006-01-10
> BO09060.5prime
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATAAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTG
BO09060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5212-PA | 1275 | Pli-RA | 1..894 | 17..910 | 4445 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 2903 | CG5212-RB | 412..1305 | 17..910 | 4455 | 99.9 | Plus |
Pli-RA | 1844 | CG5212-RA | 484..1377 | 17..910 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23862976..23863215 | 359..120 | 1185 | 99.6 | Minus |
3R | 32079331 | 3R | 23862449..23862644 | 545..350 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23862194..23862383 | 733..544 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23862031..23862130 | 832..733 | 500 | 100 | Minus |
3R | 32079331 | 3R | 23865563..23865656 | 120..27 | 470 | 100 | Minus |
3R | 32079331 | 3R | 23861891..23861969 | 910..832 | 380 | 98.7 | Minus |
Blast to na_te.dros performed 2015-02-12 20:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 2385..2441 | 521..466 | 111 | 68.4 | Minus |
BO09060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:46 Download gff for
BO09060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:39 Download gff for
BO09060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5212-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:29 Download gff for
BO09060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 477..1377 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:54 Download gff for
BO09060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 477..1377 | 9..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:54 Download gff for
BO09060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23861891..23861968 | 833..910 | 98 | <- | Minus |
3R | 23862031..23862129 | 734..832 | 100 | <- | Minus |
3R | 23862194..23862382 | 545..733 | 100 | <- | Minus |
3R | 23862450..23862641 | 353..544 | 100 | <- | Minus |
3R | 23862983..23863214 | 121..352 | 100 | <- | Minus |
3R | 23865563..23865660 | 21..120 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:29 Download gff for
BO09060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19687613..19687690 | 833..910 | 98 | <- | Minus |
arm_3R | 19687753..19687851 | 734..832 | 100 | <- | Minus |
arm_3R | 19687916..19688104 | 545..733 | 100 | <- | Minus |
arm_3R | 19688172..19688363 | 353..544 | 100 | <- | Minus |
arm_3R | 19688705..19688936 | 121..352 | 100 | <- | Minus |
arm_3R | 19691285..19691382 | 21..120 | 97 | | Minus |
BO09060.complete Sequence
1306 bp (1306 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631373
> BO09060.complete
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATTAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTGGTTATACCACGCAAAGTTAACATTGGGGATCAGGTGAACC
AGCCTTACGTGTACTTAAACTGTGGCCATGTCCAGGGCCATCACGATTGG
GGTCAGGATGAGAACACTGGCGCCCGCCGCTGTCCGATGTGCCTGGAACT
CGGTCCGGTGGTCACCCTGTGCATGGGCTTGGAACCAGCCTTCTATGTGG
ACGTGGGCGCCCCGACGTACGCGTTCAATCCATGCGGACACATGGCGACT
GAAAAAACTGTCAAATACTGGGCCAATGTGGAGATACCTCACGGTACCAA
CGGATTTCAGGCCGTCTGTCCCTTCTGTGCGACGCCCTTGGATGGAGCGA
CTGGCTACATAAAGTTAATATTCCAGGATAATCTAGATGCAAGCTTTCTA
GACCAT
BO09060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 1275 | CG5212-PB | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Pli-RA | 1275 | CG5212-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 2903 | CG5212-RB | 412..1683 | 17..1288 | 6360 | 100 | Plus |
Pli-RA | 1844 | CG5212-RA | 484..1755 | 17..1288 | 6360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23862976..23863215 | 359..120 | 1185 | 99.6 | Minus |
3R | 32079331 | 3R | 23862449..23862644 | 545..350 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23862194..23862383 | 733..544 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23861577..23861755 | 1164..986 | 895 | 100 | Minus |
3R | 32079331 | 3R | 23861814..23861969 | 987..832 | 780 | 100 | Minus |
3R | 32079331 | 3R | 23861382..23861505 | 1288..1165 | 620 | 100 | Minus |
3R | 32079331 | 3R | 23862031..23862130 | 832..733 | 500 | 100 | Minus |
3R | 32079331 | 3R | 23865563..23865656 | 120..27 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:10:37 has no hits.
BO09060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:35 Download gff for
BO09060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RC | 1..1275 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:27 Download gff for
BO09060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RC | 423..1704 | 9..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:21 Download gff for
BO09060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 484..1755 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:35 Download gff for
BO09060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RC | 423..1704 | 9..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:27 Download gff for
BO09060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 484..1755 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:27 Download gff for
BO09060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23862983..23863214 | 121..352 | 100 | <- | Minus |
3R | 23865563..23865660 | 21..120 | 97 | | Minus |
3R | 23861577..23861754 | 987..1164 | 100 | <- | Minus |
3R | 23861815..23861968 | 833..986 | 100 | <- | Minus |
3R | 23862031..23862129 | 734..832 | 100 | <- | Minus |
3R | 23862194..23862382 | 545..733 | 100 | <- | Minus |
3R | 23862450..23862641 | 353..544 | 100 | <- | Minus |
3R | 23861380..23861505 | 1165..1290 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:21 Download gff for
BO09060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19687102..19687227 | 1165..1290 | 98 | <- | Minus |
arm_3R | 19687299..19687476 | 987..1164 | 100 | <- | Minus |
arm_3R | 19687537..19687690 | 833..986 | 100 | <- | Minus |
arm_3R | 19687753..19687851 | 734..832 | 100 | <- | Minus |
arm_3R | 19687916..19688104 | 545..733 | 100 | <- | Minus |
arm_3R | 19688172..19688363 | 353..544 | 100 | <- | Minus |
arm_3R | 19688705..19688936 | 121..352 | 100 | <- | Minus |
arm_3R | 19691285..19691382 | 21..120 | 97 | | Minus |
BO09060.pep Sequence
Translation from 16 to 1306
> BO09060.pep
MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS
KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV
EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI
LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH
PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG
TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI
PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT
LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV
CPFCATPLDGATGYIKLIFQDNLDASFLDH
BO09060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-PB | 424 | CG5212-PB | 1..424 | 1..424 | 2283 | 100 | Plus |
Pli-PA | 424 | CG5212-PA | 1..424 | 1..424 | 2283 | 100 | Plus |