Clone BO09060 Report

Search the DGRC for BO09060

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptPli-RA
Protein status:BO09060.pep: validated full length
Sequenced Size:1306

Clone Sequence Records

BO09060.3prime Sequence

964 bp (786 high quality bases) assembled on 2006-01-10

> BO09060.3prime
ATGGTCTAGAAAGCTTGCATCTAGATTATCCTGGAATATTAACTTTATGT
AGCCAGTCGCTCCATCCAAGGGCGTCGCACAGAAGGGACAGACGGCCTGA
AATCCGTTGGTACCGTGAGGTATCTCCACATTGGCCCAGTATTTGACAGT
TTTTTCAGTCGCCATGTGTCCGCATGGATTGAACGCGTACGTCGGGGCGC
CCACGTCCACATAGAAGGCTGGTTCCAAGCCCATGCACAGGGTGACCACC
GGACCGAGTTCCAGGCACATCGGACAGCGGCGGGCGCCAGTGTTCTCATC
CTGACCCCAATCGTGATGGCCCTGGACATGGCCACAGTTTAAGTACACGT
AAGGCTGGTTCACCTGATCCCCAATGTTAACTTTGCGTGGTATAACCAGC
GTGTTCAGGCCCACCGGGCACTGTGGACGACCGGCATTAATGGCATCGAT
AAGTTTCTCCAAATCGTGTTTGGTCGGCGAATGCTGCAAGCCCTCGGCGG
AACGCCAAAGCAAGGTTGCGCCGCAGAGATCAATAAGTGTGCCATCCTGC
AGAATGTTGCATTCGTCATAGATCGGCTGCCCCTTTTGCTGGGCTGAACG
CGATTCGCGAAGGCTGAAAACGTCGCCGCCCACGGAGCACTCGCGCCATA
GTCCGCACTTGGCATTGCCGCCACAGAAGGATCCTTTGGGGTGCATAATC
AGCACACCGTTGGTGGTCAGGCCATCGATTTCCACATTGTCCTGCCACTT
GGTGGCCTTCTCCCCAAGGAATATATTTCTGCTCGAATCNAAGCCGGCAG
CGAATATTCTCGCCTTGGCAGGCTCACAGCGGTTGACCAGAATGCGGCAG
GCGAACCGAGAAATTGTGCTCTGCATACCCTTGGCATCCTTTTTATCGCT
GGCAGCGTATCCATCACCCACAAGTCAATGGGTGACTCCGATGAGCGTCC
CACTGAAACATGTC

BO09060.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5212-PA 1275 Pli-RA 392..1272 899..19 4361 99.7 Minus
CG5212-PA 1275 Pli-RA 337..368 953..922 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 2903 CG5212-RB 736..1683 964..19 4619 99.4 Minus
Pli-RA 1844 CG5212-RA 808..1755 964..19 4619 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23862194..23862383 574..763 950 100 Plus
3R 32079331 3R 23861577..23861755 143..321 895 100 Plus
3R 32079331 3R 23862449..23862641 762..953 844 96.9 Plus
3R 32079331 3R 23861814..23861969 320..475 780 100 Plus
3R 32079331 3R 23861382..23861505 19..142 620 100 Plus
3R 32079331 3R 23862031..23862130 475..574 500 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:58:46 has no hits.

BO09060.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:44 Download gff for BO09060.3prime
Subject Subject Range Query Range Percent Splice Strand
Pli-PA 325..1275 15..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:38 Download gff for BO09060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5212-PA 325..1275 15..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:58 Download gff for BO09060.3prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 808..1758 15..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:43 Download gff for BO09060.3prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 808..1758 15..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:43 Download gff for BO09060.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23861378..23861505 15..142 98 <- Plus
3R 23861577..23861754 143..320 100 <- Plus
3R 23861815..23861968 321..474 100 <- Plus
3R 23862031..23862129 475..573 100 <- Plus
3R 23862194..23862382 574..762 100 <- Plus
3R 23862450..23862641 763..953 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:58 Download gff for BO09060.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19687100..19687227 15..142 98 <- Plus
arm_3R 19687299..19687476 143..320 100 <- Plus
arm_3R 19687537..19687690 321..474 100 <- Plus
arm_3R 19687753..19687851 475..573 100 <- Plus
arm_3R 19687916..19688104 574..762 100 <- Plus
arm_3R 19688172..19688363 763..953 97   Plus

BO09060.5prime Sequence

910 bp (864 high quality bases) assembled on 2006-01-10

> BO09060.5prime
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATAAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTG

BO09060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5212-PA 1275 Pli-RA 1..894 17..910 4445 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 2903 CG5212-RB 412..1305 17..910 4455 99.9 Plus
Pli-RA 1844 CG5212-RA 484..1377 17..910 4455 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23862976..23863215 359..120 1185 99.6 Minus
3R 32079331 3R 23862449..23862644 545..350 980 100 Minus
3R 32079331 3R 23862194..23862383 733..544 950 100 Minus
3R 32079331 3R 23862031..23862130 832..733 500 100 Minus
3R 32079331 3R 23865563..23865656 120..27 470 100 Minus
3R 32079331 3R 23861891..23861969 910..832 380 98.7 Minus
Blast to na_te.dros performed 2015-02-12 20:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 2385..2441 521..466 111 68.4 Minus

BO09060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:46 Download gff for BO09060.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:39 Download gff for BO09060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5212-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:29 Download gff for BO09060.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 477..1377 9..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:54 Download gff for BO09060.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 477..1377 9..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:54 Download gff for BO09060.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23861891..23861968 833..910 98 <- Minus
3R 23862031..23862129 734..832 100 <- Minus
3R 23862194..23862382 545..733 100 <- Minus
3R 23862450..23862641 353..544 100 <- Minus
3R 23862983..23863214 121..352 100 <- Minus
3R 23865563..23865660 21..120 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:29 Download gff for BO09060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19687613..19687690 833..910 98 <- Minus
arm_3R 19687753..19687851 734..832 100 <- Minus
arm_3R 19687916..19688104 545..733 100 <- Minus
arm_3R 19688172..19688363 353..544 100 <- Minus
arm_3R 19688705..19688936 121..352 100 <- Minus
arm_3R 19691285..19691382 21..120 97   Minus

BO09060.complete Sequence

1306 bp (1306 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631373

> BO09060.complete
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATTAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTGGTTATACCACGCAAAGTTAACATTGGGGATCAGGTGAACC
AGCCTTACGTGTACTTAAACTGTGGCCATGTCCAGGGCCATCACGATTGG
GGTCAGGATGAGAACACTGGCGCCCGCCGCTGTCCGATGTGCCTGGAACT
CGGTCCGGTGGTCACCCTGTGCATGGGCTTGGAACCAGCCTTCTATGTGG
ACGTGGGCGCCCCGACGTACGCGTTCAATCCATGCGGACACATGGCGACT
GAAAAAACTGTCAAATACTGGGCCAATGTGGAGATACCTCACGGTACCAA
CGGATTTCAGGCCGTCTGTCCCTTCTGTGCGACGCCCTTGGATGGAGCGA
CTGGCTACATAAAGTTAATATTCCAGGATAATCTAGATGCAAGCTTTCTA
GACCAT

BO09060.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 1275 CG5212-PB 1..1272 17..1288 6360 100 Plus
Pli-RA 1275 CG5212-PA 1..1272 17..1288 6360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 2903 CG5212-RB 412..1683 17..1288 6360 100 Plus
Pli-RA 1844 CG5212-RA 484..1755 17..1288 6360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23862976..23863215 359..120 1185 99.6 Minus
3R 32079331 3R 23862449..23862644 545..350 980 100 Minus
3R 32079331 3R 23862194..23862383 733..544 950 100 Minus
3R 32079331 3R 23861577..23861755 1164..986 895 100 Minus
3R 32079331 3R 23861814..23861969 987..832 780 100 Minus
3R 32079331 3R 23861382..23861505 1288..1165 620 100 Minus
3R 32079331 3R 23862031..23862130 832..733 500 100 Minus
3R 32079331 3R 23865563..23865656 120..27 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:10:37 has no hits.

BO09060.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:35 Download gff for BO09060.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 1..1275 17..1292 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:27 Download gff for BO09060.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 423..1704 9..1292 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:21 Download gff for BO09060.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 484..1755 17..1290 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:35 Download gff for BO09060.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 423..1704 9..1292 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:27 Download gff for BO09060.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 484..1755 17..1290 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:27 Download gff for BO09060.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23862983..23863214 121..352 100 <- Minus
3R 23865563..23865660 21..120 97   Minus
3R 23861577..23861754 987..1164 100 <- Minus
3R 23861815..23861968 833..986 100 <- Minus
3R 23862031..23862129 734..832 100 <- Minus
3R 23862194..23862382 545..733 100 <- Minus
3R 23862450..23862641 353..544 100 <- Minus
3R 23861380..23861505 1165..1290 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:21 Download gff for BO09060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19687102..19687227 1165..1290 98 <- Minus
arm_3R 19687299..19687476 987..1164 100 <- Minus
arm_3R 19687537..19687690 833..986 100 <- Minus
arm_3R 19687753..19687851 734..832 100 <- Minus
arm_3R 19687916..19688104 545..733 100 <- Minus
arm_3R 19688172..19688363 353..544 100 <- Minus
arm_3R 19688705..19688936 121..352 100 <- Minus
arm_3R 19691285..19691382 21..120 97   Minus

BO09060.pep Sequence

Translation from 16 to 1306

> BO09060.pep
MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS
KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV
EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI
LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH
PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG
TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI
PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT
LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV
CPFCATPLDGATGYIKLIFQDNLDASFLDH

BO09060.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-PB 424 CG5212-PB 1..424 1..424 2283 100 Plus
Pli-PA 424 CG5212-PA 1..424 1..424 2283 100 Plus