Clone BO09061 Report

Search the DGRC for BO09061

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG11208-RA
Protein status:BO09061.pep: validated full length
Sequenced Size:1738

Clone Sequence Records

BO09061.3prime Sequence

846 bp (845 high quality bases) assembled on 2006-01-10

> BO09061.3prime
ATGGTCTAGAAAGCTTGCCAGTTTTGACTCTGTGAGCCAGTTGAAGGACT
GCGGCTTGCGATCGGATGACGGGCTGATGGCCACATTAATGATGGTTGGC
CTGTCGGTGAGCTGATTGGCCGCCTTGACAGCCGCCTGCAGCTGTTCGAT
CTCTGTGCAGAAGTAGCCCTTCATGCCGAACATTTTCATCATCTCCTCGT
AGCGCACCTGAACTCCCAATGCCGATGGTGGTGTGATTTGGGTAAGATCG
CCCTCACTGCGAATGGCCTCAAAAGTGTCCTTGTCGAAGCCGCCATAGAT
GCCATTGTTGTTCACAATCACAATGGTGACGGGCAGCTTATAGCGCACCA
TAGTCTCAATTTCCATGCCCGAGAATCCAAAGGCGCTGTCTCCCTCCACG
CACAGGACTCGCTTTCCGGGCGCAAAGTCGCGGCAGAAAAGCGCGGCGGC
CACGGCGAATCCAGGACCCACGCCCATGGTGCCAAAGGTACCGGCATCCA
GGCGATGACGGGGCTGCTCGTTCAGCAGCATGGAGCGACCAATATCCATG
GTGTTGGCTCCCTCACTAACAATGATCGTGTCCTTGGGCAGCAGCTCACG
GAGATGGTGGAACACCGCGTAGTAGTTCAGCGGCGTCTCCGTGTTCAAAG
ACATCTTTTGCACGGTGTCGCGGTTCTGCTTGCACTTGACGGCCAACTGC
TTCCACCAATCCTGCTCGTAGCCGAAGCGGAAGTTAACAGCGTTCATTTG
CTCAAACAATTGCTCGGCGAATGGACGGATGTCCGCCTGGATGGCCACCG
AAGCCACAACCGAGTTATGCAGCTCCTCAGGATTGATGTCCACCTG

BO09061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 1707 CG11208-RA 877..1704 846..19 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1984 CG11208-RA 1016..1843 846..19 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20243173..20243783 236..846 3055 100 Plus
2R 25286936 2R 20242893..20243109 19..235 1085 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:00:45 has no hits.

BO09061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:47 Download gff for BO09061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 877..1707 18..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:41 Download gff for BO09061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 877..1707 18..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:57 Download gff for BO09061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1016..1843 19..846 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:33 Download gff for BO09061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1016..1843 19..846 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:33 Download gff for BO09061.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20242893..20243109 19..235 100 <- Plus
2R 20243173..20243783 236..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:57 Download gff for BO09061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16130398..16130614 19..235 100 <- Plus
arm_2R 16130678..16131288 236..846 100   Plus

BO09061.5prime Sequence

853 bp (796 high quality bases) assembled on 2006-01-10

> BO09061.5prime
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTC

BO09061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 1707 CG11208-RA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1984 CG11208-RA 140..976 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20243823..20244413 853..263 2955 100 Minus
2R 25286936 2R 20244483..20244682 265..66 1000 100 Minus
2R 25286936 2R 20245198..20245249 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:23:01 has no hits.

BO09061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:48 Download gff for BO09061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:43 Download gff for BO09061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:24:08 Download gff for BO09061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..976 17..853 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:28:15 Download gff for BO09061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..976 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:28:15 Download gff for BO09061.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20243823..20244412 264..853 100 <- Minus
2R 20244485..20244680 68..263 100 <- Minus
2R 20245199..20245249 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:24:08 Download gff for BO09061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16131328..16131917 264..853 100 <- Minus
arm_2R 16131990..16132185 68..263 100 <- Minus
arm_2R 16132704..16132754 17..67 100   Minus

BO09061.complete Sequence

1738 bp (1738 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631374

> BO09061.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTCGGAAAGGCTCCACGCTACGACAAGGACGTGAAGTTTATCCAGGTGGA
CATCAATCCTGAGGAGCTGCATAACTCGGTTGTGGCTTCGGTGGCCATCC
AGGCGGACATCCGTCCATTCGCCGAGCAATTGTTTGAGCAAATGAACGCT
GTTAACTTCCGCTTCGGCTACGAGCAGGATTGGTGGAAGCAGTTGGCCGT
CAAGTGCAAGCAGAACCGCGACACCGTGCAAAAGATGTCTTTGAACACGG
AGACGCCGCTGAACTACTACGCGGTGTTCCACCATCTCCGTGAGCTGCTG
CCCAAGGACACGATCATTGTTAGTGAGGGAGCCAACACCATGGATATTGG
TCGCTCCATGCTGCTGAACGAGCAGCCCCGTCATCGCCTGGATGCCGGTA
CCTTTGGCACCATGGGCGTGGGTCCTGGATTCGCCGTGGCCGCCGCGCTT
TTCTGCCGCGACTTTGCGCCCGGAAAGCGAGTCCTGTGCGTGGAGGGAGA
CAGCGCCTTTGGATTCTCGGGCATGGAAATTGAGACTATGGTGCGCTATA
AGCTGCCCGTCACCATTGTGATTGTGAACAACAATGGCATCTATGGCGGC
TTCGACAAGGACACTTTTGAGGCCATTCGCAGTGAGGGCGATCTTACCCA
AATCACACCACCATCGGCATTGGGAGTTCAGGTGCGCTACGAGGAGATGA
TGAAAATGTTCGGCATGAAGGGCTACTTCTGCACAGAGATCGAACAGCTG
CAGGCGGCTGTCAAGGCGGCCAATCAGCTCACCGACAGGCCAACCATCAT
TAATGTGGCCATCAGCCCGTCATCCGATCGCAAGCCGCAGTCCTTCAACT
GGCTCACAGAGTCAAAACTGGCAAGCTTTCTAGACCAT

BO09061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1707 CG11208-PA 1..1704 17..1720 8520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 1984 CG11208-RA 140..1843 17..1720 8520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20243173..20244413 1503..263 6205 100 Minus
2R 25286936 2R 20242893..20243109 1720..1504 1085 100 Minus
2R 25286936 2R 20244483..20244682 265..66 1000 100 Minus
2R 25286936 2R 20245198..20245249 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:40:46 has no hits.

BO09061.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:37 Download gff for BO09061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1..1707 17..1721 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:40 Download gff for BO09061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 151..1854 17..1720 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:17 Download gff for BO09061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..1843 17..1722 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:37 Download gff for BO09061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 151..1854 17..1720 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:36 Download gff for BO09061.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 140..1843 17..1722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:36 Download gff for BO09061.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20242891..20243109 1504..1722 99 <- Minus
2R 20243173..20244412 264..1503 100 <- Minus
2R 20244485..20244680 68..263 100 <- Minus
2R 20245199..20245249 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:17 Download gff for BO09061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16130396..16130614 1504..1722 99 <- Minus
arm_2R 16131990..16132185 68..263 100 <- Minus
arm_2R 16132704..16132754 17..67 100   Minus
arm_2R 16130678..16131917 264..1503 100 <- Minus

BO09061.pep Sequence

Translation from 16 to 1738

> BO09061.pep
MAEVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNE
QAACYAAQAIGYLTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGG
ATNQDHEGIGGFQECPQVELSRPYCKYAARPATAALIPLHVEKAVRYATY
GRPGVAYLDFPGNILQSKAQEASIYKALAHPAPPLAYPPHDDVIRAAKLL
RQAKRPLVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQ
CVSSARTLALQKADVVLLLGARLNWILHFGKAPRYDKDVKFIQVDINPEE
LHNSVVASVAIQADIRPFAEQLFEQMNAVNFRFGYEQDWWKQLAVKCKQN
RDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSEGANTMDIGRSMLL
NEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGF
SGMEIETMVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPS
ALGVQVRYEEMMKMFGMKGYFCTEIEQLQAAVKAANQLTDRPTIINVAIS
PSSDRKPQSFNWLTESKLASFLDH

BO09061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 568 CG11208-PA 1..568 1..568 2955 100 Plus