Clone Sequence Records
BO09061.3prime Sequence
846 bp (845 high quality bases) assembled on 2006-01-10
> BO09061.3prime
ATGGTCTAGAAAGCTTGCCAGTTTTGACTCTGTGAGCCAGTTGAAGGACT
GCGGCTTGCGATCGGATGACGGGCTGATGGCCACATTAATGATGGTTGGC
CTGTCGGTGAGCTGATTGGCCGCCTTGACAGCCGCCTGCAGCTGTTCGAT
CTCTGTGCAGAAGTAGCCCTTCATGCCGAACATTTTCATCATCTCCTCGT
AGCGCACCTGAACTCCCAATGCCGATGGTGGTGTGATTTGGGTAAGATCG
CCCTCACTGCGAATGGCCTCAAAAGTGTCCTTGTCGAAGCCGCCATAGAT
GCCATTGTTGTTCACAATCACAATGGTGACGGGCAGCTTATAGCGCACCA
TAGTCTCAATTTCCATGCCCGAGAATCCAAAGGCGCTGTCTCCCTCCACG
CACAGGACTCGCTTTCCGGGCGCAAAGTCGCGGCAGAAAAGCGCGGCGGC
CACGGCGAATCCAGGACCCACGCCCATGGTGCCAAAGGTACCGGCATCCA
GGCGATGACGGGGCTGCTCGTTCAGCAGCATGGAGCGACCAATATCCATG
GTGTTGGCTCCCTCACTAACAATGATCGTGTCCTTGGGCAGCAGCTCACG
GAGATGGTGGAACACCGCGTAGTAGTTCAGCGGCGTCTCCGTGTTCAAAG
ACATCTTTTGCACGGTGTCGCGGTTCTGCTTGCACTTGACGGCCAACTGC
TTCCACCAATCCTGCTCGTAGCCGAAGCGGAAGTTAACAGCGTTCATTTG
CTCAAACAATTGCTCGGCGAATGGACGGATGTCCGCCTGGATGGCCACCG
AAGCCACAACCGAGTTATGCAGCTCCTCAGGATTGATGTCCACCTG
BO09061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-PA | 1707 | CG11208-RA | 877..1704 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1984 | CG11208-RA | 1016..1843 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20243173..20243783 | 236..846 | 3055 | 100 | Plus |
2R | 25286936 | 2R | 20242893..20243109 | 19..235 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:00:45 has no hits.
BO09061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:47 Download gff for
BO09061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 877..1707 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:41 Download gff for
BO09061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 877..1707 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:57 Download gff for
BO09061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 1016..1843 | 19..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:33 Download gff for
BO09061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 1016..1843 | 19..846 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:33 Download gff for
BO09061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20242893..20243109 | 19..235 | 100 | <- | Plus |
2R | 20243173..20243783 | 236..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:57 Download gff for
BO09061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16130398..16130614 | 19..235 | 100 | <- | Plus |
arm_2R | 16130678..16131288 | 236..846 | 100 | | Plus |
BO09061.5prime Sequence
853 bp (796 high quality bases) assembled on 2006-01-10
> BO09061.5prime
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTC
BO09061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-PA | 1707 | CG11208-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1984 | CG11208-RA | 140..976 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20243823..20244413 | 853..263 | 2955 | 100 | Minus |
2R | 25286936 | 2R | 20244483..20244682 | 265..66 | 1000 | 100 | Minus |
2R | 25286936 | 2R | 20245198..20245249 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:23:01 has no hits.
BO09061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:48 Download gff for
BO09061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:43 Download gff for
BO09061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:24:08 Download gff for
BO09061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..976 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:28:15 Download gff for
BO09061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..976 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:28:15 Download gff for
BO09061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20243823..20244412 | 264..853 | 100 | <- | Minus |
2R | 20244485..20244680 | 68..263 | 100 | <- | Minus |
2R | 20245199..20245249 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:24:08 Download gff for
BO09061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16131328..16131917 | 264..853 | 100 | <- | Minus |
arm_2R | 16131990..16132185 | 68..263 | 100 | <- | Minus |
arm_2R | 16132704..16132754 | 17..67 | 100 | | Minus |
BO09061.complete Sequence
1738 bp (1738 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631374
> BO09061.complete
GAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAG
AATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATC
CCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACAT
CGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCT
ACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTG
CTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACT
AATCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCT
TTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCT
GCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGT
GCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTG
GCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTG
GCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAG
GGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCA
AGGGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAG
AACACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATC
CGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAA
AGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCAT
TTCGGAAAGGCTCCACGCTACGACAAGGACGTGAAGTTTATCCAGGTGGA
CATCAATCCTGAGGAGCTGCATAACTCGGTTGTGGCTTCGGTGGCCATCC
AGGCGGACATCCGTCCATTCGCCGAGCAATTGTTTGAGCAAATGAACGCT
GTTAACTTCCGCTTCGGCTACGAGCAGGATTGGTGGAAGCAGTTGGCCGT
CAAGTGCAAGCAGAACCGCGACACCGTGCAAAAGATGTCTTTGAACACGG
AGACGCCGCTGAACTACTACGCGGTGTTCCACCATCTCCGTGAGCTGCTG
CCCAAGGACACGATCATTGTTAGTGAGGGAGCCAACACCATGGATATTGG
TCGCTCCATGCTGCTGAACGAGCAGCCCCGTCATCGCCTGGATGCCGGTA
CCTTTGGCACCATGGGCGTGGGTCCTGGATTCGCCGTGGCCGCCGCGCTT
TTCTGCCGCGACTTTGCGCCCGGAAAGCGAGTCCTGTGCGTGGAGGGAGA
CAGCGCCTTTGGATTCTCGGGCATGGAAATTGAGACTATGGTGCGCTATA
AGCTGCCCGTCACCATTGTGATTGTGAACAACAATGGCATCTATGGCGGC
TTCGACAAGGACACTTTTGAGGCCATTCGCAGTGAGGGCGATCTTACCCA
AATCACACCACCATCGGCATTGGGAGTTCAGGTGCGCTACGAGGAGATGA
TGAAAATGTTCGGCATGAAGGGCTACTTCTGCACAGAGATCGAACAGCTG
CAGGCGGCTGTCAAGGCGGCCAATCAGCTCACCGACAGGCCAACCATCAT
TAATGTGGCCATCAGCCCGTCATCCGATCGCAAGCCGCAGTCCTTCAACT
GGCTCACAGAGTCAAAACTGGCAAGCTTTCTAGACCAT
BO09061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1707 | CG11208-PA | 1..1704 | 17..1720 | 8520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-RA | 1984 | CG11208-RA | 140..1843 | 17..1720 | 8520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20243173..20244413 | 1503..263 | 6205 | 100 | Minus |
2R | 25286936 | 2R | 20242893..20243109 | 1720..1504 | 1085 | 100 | Minus |
2R | 25286936 | 2R | 20244483..20244682 | 265..66 | 1000 | 100 | Minus |
2R | 25286936 | 2R | 20245198..20245249 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:46 has no hits.
BO09061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:37 Download gff for
BO09061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 1..1707 | 17..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:40 Download gff for
BO09061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 151..1854 | 17..1720 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:17 Download gff for
BO09061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..1843 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:37 Download gff for
BO09061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 151..1854 | 17..1720 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:36 Download gff for
BO09061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11208-RA | 140..1843 | 17..1722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:36 Download gff for
BO09061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20242891..20243109 | 1504..1722 | 99 | <- | Minus |
2R | 20243173..20244412 | 264..1503 | 100 | <- | Minus |
2R | 20244485..20244680 | 68..263 | 100 | <- | Minus |
2R | 20245199..20245249 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:17 Download gff for
BO09061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16130396..16130614 | 1504..1722 | 99 | <- | Minus |
arm_2R | 16131990..16132185 | 68..263 | 100 | <- | Minus |
arm_2R | 16132704..16132754 | 17..67 | 100 | | Minus |
arm_2R | 16130678..16131917 | 264..1503 | 100 | <- | Minus |
BO09061.pep Sequence
Translation from 16 to 1738
> BO09061.pep
MAEVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNE
QAACYAAQAIGYLTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGG
ATNQDHEGIGGFQECPQVELSRPYCKYAARPATAALIPLHVEKAVRYATY
GRPGVAYLDFPGNILQSKAQEASIYKALAHPAPPLAYPPHDDVIRAAKLL
RQAKRPLVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQ
CVSSARTLALQKADVVLLLGARLNWILHFGKAPRYDKDVKFIQVDINPEE
LHNSVVASVAIQADIRPFAEQLFEQMNAVNFRFGYEQDWWKQLAVKCKQN
RDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSEGANTMDIGRSMLL
NEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGF
SGMEIETMVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPS
ALGVQVRYEEMMKMFGMKGYFCTEIEQLQAAVKAANQLTDRPTIINVAIS
PSSDRKPQSFNWLTESKLASFLDH
BO09061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11208-PA | 568 | CG11208-PA | 1..568 | 1..568 | 2955 | 100 | Plus |