Clone Sequence Records
BO09065.3prime Sequence
947 bp (819 high quality bases) assembled on 2006-01-10
> BO09065.3prime
ATGGTCTAGAAAGCTTGCCAGCTGCGCCAGCGAGTCGGAGCGAATGAGCG
GCGCCAGTGAGCTGGGCGCCTTGTGACCCGGCTCAATCTCGTACTGTACG
TCTAGCGAGGCACGTTTCTTTTCCAATGTGGAGGTCTGCCCCTCCGGAAT
GAACGCGGACACTATTATGGCACAGAAGACGCACAAGGCACCAAACACGA
AGGGCGGACCTGGCACATGCTGTGAGATCTTCTCCACGTTCGTCGCCCTG
CTGCCGCTGCTCTTCGCATGCGAGTCGTGGTCGTCGTTCAGATCGACGTT
AAACAGGTAGAAGACGACGCCGAAGACCGCAGGACCCAGGCCATTGCACA
GACCCCTCATGCCCGTGATCATGCCCTGAACAGCGCCCTGACTCTCGGGA
GCCGCATAAAGGGATACAAAAGCACTGATGGCGGGATACGTGATGGAGCC
CAGGGCAGCCACAACGCCAGCCGACCACATCATCCACTTTTGACTGCCAA
AGCCGTACCACAGCAGCTGCACGATTTCCAGGGCTAGGCCCATTATAATC
GTGCGCTTGGCTCCAAACACTTGCATGAAGGAGCCGAGTGTGACTTGCAC
CGTGATGCTGAGGATGCCTACTATGGCTATAAAGACCGAGACCTCCACAT
AGTTAAAGCCCATCTTCAGTTTCAGATAGACAAACATGCAGGAATACTCC
CCTGCCTCGGGCAGATAGGATAACAGCACGGTGAGGCACAGCATCAGCAC
GGTCTTATCGGTGCCCACTTTGCGCAGGGCCAGAAATGGATCCGCCTGCT
CCCAGCTGATAGGCGCACCCCAGGAAGCTGGCCGCATCTTCTCTGATAGA
CTCTCCGGCACGGCCACCAGTATGAAGAATACATCGAGCAGCGCAATGGC
CGTGGAGAGGGCCACGAACAGCGTGTCTCCGTACATCTCCATCAGGG
BO09065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-PC | 1467 | CG11537-RC | 536..1464 | 947..19 | 4595 | 99.7 | Minus |
| CG11537-PB | 2043 | CG11537-RB | 1112..2040 | 947..19 | 4595 | 99.7 | Minus |
| CG11537-PA | 2043 | CG11537-RA | 1112..2040 | 947..19 | 4595 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RG | 3348 | CG11537-RG | 1923..2851 | 947..19 | 4615 | 99.8 | Minus |
| CG11537-RE | 3214 | CG11537-RE | 1623..2551 | 947..19 | 4615 | 99.8 | Minus |
| CG11537-RD | 3911 | CG11537-RD | 1688..2616 | 947..19 | 4615 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3129585..3129860 | 112..387 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 3130239..3130448 | 572..781 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 3130511..3130678 | 780..947 | 810 | 98.8 | Plus |
| 3L | 28110227 | 3L | 3129925..3130024 | 386..485 | 500 | 100 | Plus |
| 3L | 28110227 | 3L | 3129329..3129423 | 19..113 | 475 | 100 | Plus |
| 3L | 28110227 | 3L | 3130091..3130178 | 484..571 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:35:28 has no hits.
BO09065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:52 Download gff for
BO09065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PB | 1112..2043 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:49 Download gff for
BO09065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PA | 1112..2043 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:48 Download gff for
BO09065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RD | 1688..2616 | 19..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:29 Download gff for
BO09065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RD | 1688..2616 | 19..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:29 Download gff for
BO09065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3129926..3130023 | 387..484 | 100 | <- | Plus |
| 3L | 3129587..3129859 | 114..386 | 100 | <- | Plus |
| 3L | 3130092..3130178 | 485..571 | 100 | <- | Plus |
| 3L | 3130239..3130447 | 572..780 | 100 | <- | Plus |
| 3L | 3130512..3130678 | 781..947 | 98 | | Plus |
| 3L | 3129329..3129423 | 19..113 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:48 Download gff for
BO09065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3129329..3129423 | 19..113 | 100 | <- | Plus |
| arm_3L | 3129587..3129859 | 114..386 | 100 | <- | Plus |
| arm_3L | 3129926..3130023 | 387..484 | 100 | <- | Plus |
| arm_3L | 3130092..3130178 | 485..571 | 100 | <- | Plus |
| arm_3L | 3130239..3130447 | 572..780 | 100 | <- | Plus |
| arm_3L | 3130512..3130678 | 781..947 | 98 | | Plus |
BO09065.5prime Sequence
894 bp (725 high quality bases) assembled on 2006-01-10
> BO09065.5prime
GAAGTTATCAGTCGACATGCCCAAAATCCATGTGAAGAAGCCGCTGGCGG
GACTGGTCATACGGAATCGAGCCCACAAGAGCAAGAGTGTCTTCACGAGT
TCCGGAATCGGGGAGCCGAGTGTTCATCATGCGCTGGTTGTGATATTTCT
AGAGTTCTTCGCCTGGGGCCTGCTGACGATGCCCATAATATCGACTCTCA
ACCAGACGTTCCCGGATCACACATTCCTAATGAACGGCCTGGTCATGGGC
ATCAAGGGGATCCTGTCGTTCCTGTCGGCGCCTCTGATCGGCGCCCTTTC
GGACATCTGGGGCCGAAAGTTTTTCCTATTAGTCACAGTATTCTTCACCT
GCCTGCCCATACCGCTGATGTCCATCAATACGTGGTGGTTCTTTGCCATG
ATCTCAATAAGCGGCGCCTTCGCAGTCACCTTCTCGGTGGTGTTTGCCTA
CGTGGCGGACGTCACCACGCCGGAGGAGCGATCAAAGGCCTATGGCCTGG
CCTCGGCCACATTTGCCGCCAGTCTGGTCATCTCGCCGGCTCTGGGCAAT
GCCCTGATGGAGATGTACGGAGACACGCTGGTCGTGGCCCTCTCCACGGC
CATTGCGCTGCTCGATGTATTCTTCATACTGGTGGCCGTGCCGGAGAGTC
TATCAGAGAAGATGCGGCCAGCCTCCTGGGGTGCGCCTATCAGCTGGGAG
CAGGCGGATCCATTTCTGGCCCTGCGCAAAGTGGGCACCGATAAGACCGT
GCTGATGCTGTGCCTCACCGTGCTGTTATCCTATCTGCCCGAGGCAGGGG
AGTATTCCTGCATGTTTGTCTATCTGAAACTGAAGATGGGCTTTAACTAT
GTGGAGGTCTCGGTCTTTATAGCCATAGTAGGCATCCTCAGCAT
BO09065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-PC | 1467 | CG11537-RC | 1..878 | 17..894 | 4390 | 100 | Plus |
| CG11537-PB | 2043 | CG11537-RB | 657..1454 | 97..894 | 3990 | 100 | Plus |
| CG11537-PA | 2043 | CG11537-RA | 657..1454 | 97..894 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 2510 | CG11537-RC | 550..1427 | 17..894 | 4390 | 100 | Plus |
| CG11537-RG | 3348 | CG11537-RG | 1468..2265 | 97..894 | 3990 | 100 | Plus |
| CG11537-RE | 3214 | CG11537-RE | 1168..1965 | 97..894 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3130511..3131037 | 719..193 | 2635 | 100 | Minus |
| 3L | 28110227 | 3L | 3130272..3130448 | 894..718 | 885 | 100 | Minus |
| 3L | 28110227 | 3L | 3131109..3131205 | 193..97 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 3142828..3142908 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:47:34 has no hits.
BO09065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:53 Download gff for
BO09065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PC | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:51 Download gff for
BO09065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-PC | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:08 Download gff for
BO09065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..1427 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:26 Download gff for
BO09065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..1427 | 17..894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:26 Download gff for
BO09065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3130272..3130447 | 719..894 | 100 | <- | Minus |
| 3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| 3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| 3L | 3142828..3142908 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:08 Download gff for
BO09065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3130272..3130447 | 719..894 | 100 | <- | Minus |
| arm_3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| arm_3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| arm_3L | 3142828..3142908 | 17..97 | 100 | | Minus |
BO09065.complete Sequence
1498 bp (1498 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631375
> BO09065.complete
GAAGTTATCAGTCGACATGCCCAAAATCCATGTGAAGAAGCCGCTGGCGG
GACTGGTCATACGGAATCGAGCCCACAAGAGCAAGAGTGTCTTCACGAGT
TCCGGAATCGGGGAGCCGAGTGTTCATCATGCGCTGGTTGTGATATTTCT
AGAGTTCTTCGCCTGGGGCCTGCTGACGATGCCCATAATATCGACTCTCA
ACCAGACGTTCCCGGATCACACATTCCTAATGAACGGCCTGGTCATGGGC
ATCAAGGGGATCCTGTCGTTCCTGTCGGCGCCTCTGATCGGCGCCCTTTC
GGACATCTGGGGCCGAAAGTTTTTCCTATTAGTCACAGTATTCTTCACCT
GCCTGCCCATACCGCTGATGTCCATCAATACGTGGTGGTTCTTTGCCATG
ATCTCAATAAGCGGCGCCTTCGCAGTCACCTTCTCGGTGGTGTTTGCCTA
CGTGGCGGACGTCACCACGCCGGAGGAGCGATCAAAGGCCTATGGCCTGG
CCTCGGCCACATTTGCCGCCAGTCTGGTCATCTCGCCGGCTCTGGGCAAT
GCCCTGATGGAGATGTACGGAGACACGCTGGTCGTGGCCCTCTCCACGGC
CATTGCGCTGCTCGATGTATTCTTCATACTGGTGGCCGTGCCGGAGAGTC
TATCAGAGAAGATGCGGCCAGCCTCCTGGGGTGCGCCTATCAGCTGGGAG
CAGGCGGATCCATTTCTGGCCCTGCGCAAAGTGGGCACCGATAAGACCGT
GCTGATGCTGTGCCTCACCGTGCTGTTATCCTATCTGCCCGAGGCAGGGG
AGTATTCCTGCATGTTTGTCTATCTGAAACTGAAGATGGGCTTTAACTAT
GTGGAGGTCTCGGTCTTTATAGCCATAGTAGGCATCCTCAGCATCACGGT
GCAAGTCACACTCGGCTCCTTCATGCAAGTGTTTGGAGCCAAGCGCACGA
TTATAATGGGCCTAGCCCTGGAAATCGTGCAGCTGCTGTGGTACGGCTTT
GGCAGTCAAAAGTGGATGATGTGGTCGGCTGGCGTTGTGGCTGCCCTGGG
CTCCATCACGTATCCCGCCATCAGTGCTTTTGTATCCCTTTATGCGGCTC
CCGAGAGTCAGGGCGCTGTTCAGGGCATGATCACGGGCATGAGGGGTCTG
TGCAATGGCCTGGGTCCTGCGGTCTTCGGCGTCGTCTTCTACCTGTTTAA
CGTCGATCTGAACGACGACCACGACTCGCATGCGAAGAGCAGCGGCAGCA
GGGCGACGAACGTGGAGAAGATCTCACAGCATGTGCCAGGTCCGCCCTTC
GTGTTTGGTGCCTTGTGCGTCTTCTGTGCCATAATAGTGTCCGCGTTCAT
TCCGGAGGGGCAGACCTCCACATTGGAAAAGAAACGTGCCTCGCTAGACG
TACAGTACGAGATTGAGCCGGGTCACAAGGCGCCCAGCTCACTGGCGCCG
CTCATTCGCTCCGACTCGCTGGCGCAGCTGGCAAGCTTTCTAGACCAT
BO09065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 1467 | CG11537-PC | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| CG11537-RG | 2118 | CG11537-PG | 732..2115 | 97..1480 | 6920 | 100 | Plus |
| CG11537-RE | 2118 | CG11537-PE | 732..2115 | 97..1480 | 6920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 2510 | CG11537-RC | 550..2013 | 17..1480 | 7320 | 100 | Plus |
| CG11537-RG | 3348 | CG11537-RG | 1468..2851 | 97..1480 | 6920 | 100 | Plus |
| CG11537-RE | 3214 | CG11537-RE | 1168..2551 | 97..1480 | 6920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3130511..3131037 | 719..193 | 2635 | 100 | Minus |
| 3L | 28110227 | 3L | 3129585..3129860 | 1387..1112 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 3130239..3130448 | 927..718 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 3129925..3130024 | 1113..1014 | 500 | 100 | Minus |
| 3L | 28110227 | 3L | 3131109..3131205 | 193..97 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 3129329..3129423 | 1480..1386 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 3130091..3130178 | 1015..928 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 3142828..3142908 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:33:01 has no hits.
BO09065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:36 Download gff for
BO09065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 1..1467 | 17..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:18 Download gff for
BO09065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 547..2010 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:24 Download gff for
BO09065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..2013 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:36 Download gff for
BO09065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 547..2010 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:22 Download gff for
BO09065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 550..2013 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:22 Download gff for
BO09065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3129327..3129423 | 1386..1482 | 97 | <- | Minus |
| 3L | 3129587..3129859 | 1113..1385 | 100 | <- | Minus |
| 3L | 3129926..3130023 | 1015..1112 | 100 | <- | Minus |
| 3L | 3130092..3130178 | 928..1014 | 100 | <- | Minus |
| 3L | 3130239..3130447 | 719..927 | 100 | <- | Minus |
| 3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| 3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| 3L | 3142828..3142908 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:24 Download gff for
BO09065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3129327..3129423 | 1386..1482 | 97 | <- | Minus |
| arm_3L | 3129587..3129859 | 1113..1385 | 100 | <- | Minus |
| arm_3L | 3129926..3130023 | 1015..1112 | 100 | <- | Minus |
| arm_3L | 3130092..3130178 | 928..1014 | 100 | <- | Minus |
| arm_3L | 3130239..3130447 | 719..927 | 100 | <- | Minus |
| arm_3L | 3130512..3131036 | 194..718 | 100 | <- | Minus |
| arm_3L | 3131109..3131204 | 98..193 | 100 | <- | Minus |
| arm_3L | 3142828..3142908 | 17..97 | 100 | | Minus |
BO09065.pep Sequence
Translation from 16 to 1498
> BO09065.pep
MPKIHVKKPLAGLVIRNRAHKSKSVFTSSGIGEPSVHHALVVIFLEFFAW
GLLTMPIISTLNQTFPDHTFLMNGLVMGIKGILSFLSAPLIGALSDIWGR
KFFLLVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVFAYVADVT
TPEERSKAYGLASATFAASLVISPALGNALMEMYGDTLVVALSTAIALLD
VFFILVAVPESLSEKMRPASWGAPISWEQADPFLALRKVGTDKTVLMLCL
TVLLSYLPEAGEYSCMFVYLKLKMGFNYVEVSVFIAIVGILSITVQVTLG
SFMQVFGAKRTIIMGLALEIVQLLWYGFGSQKWMMWSAGVVAALGSITYP
AISAFVSLYAAPESQGAVQGMITGMRGLCNGLGPAVFGVVFYLFNVDLND
DHDSHAKSSGSRATNVEKISQHVPGPPFVFGALCVFCAIIVSAFIPEGQT
STLEKKRASLDVQYEIEPGHKAPSSLAPLIRSDSLAQLASFLDH
BO09065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-PC | 488 | CG11537-PC | 1..488 | 1..488 | 2484 | 100 | Plus |
| CG11537-PG | 705 | CG11537-PG | 245..705 | 28..488 | 2347 | 100 | Plus |
| CG11537-PE | 705 | CG11537-PE | 245..705 | 28..488 | 2347 | 100 | Plus |
| CG11537-PD | 705 | CG11537-PD | 245..705 | 28..488 | 2347 | 100 | Plus |
| CG11537-PA | 680 | CG11537-PA | 220..680 | 28..488 | 2347 | 100 | Plus |
