Clone Sequence Records
BO09066.3prime Sequence
953 bp (886 high quality bases) assembled on 2006-01-10
> BO09066.3prime
ATGGTCTAGAAAGCTTGCAAGGACCTCTACATTCTTGGGCGCCCGGTAAT
CATAGGCAGCCACCTCGGGTCGCGTCACCAGATGCTCCGAATAGACTTCC
GCCAACCTCAGGCACTGCTCCACAGTTAGTTCAAAGGGACGCAGCGTGTC
CTGTACTTCGGCGCGCTGAAATAGCTTCTCAGCAACCTCCTCGCGATCTT
CTGGAGGAAGCAGGGTGCCATAGCCTCGGCGACAGTACTTCTGGCGCATG
CTAAAGATGTGACGGACTACGCGCTCAACTAGGTGAAACGGCAATTGAGT
CTTAGGGCGCTTTAGGGGAATTAGCTTGACGACGCCCACATCCACCTGTG
GTTTCGGAACGAACGCCTTGCCCGGTATGGTGAACTTCATGACGGGTTCC
GTCCACACCTGCGACATCACCGAGAGCCGGCAGCGCTGTTCGCCGCCTAC
AGGGGCACAAATTCGCTCGGCCACCTCTTGCTGGAAGGTAAGAGTCATAC
AGGTGTCGATGCGCCGGAAAGCACCACGCCTGGCGGCCAAATCATCAAGC
CAATTGATCAACAGTCGAGTGGATATGGCGAACGGCAGGTTGCCAATCAG
ATGGATCCGCTGTGAGGTGTCCGGGATGTGCTGCTCAATGTTGAAGCGCA
GGATGTCATCATAGTGGATGTCGAACTGGATGTTTAGTGGACTGGCGCAT
TCCTTGAGCAACTGCAGTGTTTCGCCGAAGCGCGGATCCTTCTCCACAAG
CAACAATCGCTGTGGGTGACGACGCAGAATCGAGCGCGTGATACCGCCCG
GCCCGGGACCCACCTCAAGAACTAAATCCCGGGGATCGATGCGTCCCGCC
GACTTGACTATCTTGTCCGTGAGCCGCTCGTCCATGAGGAAAGTCTGGCT
AAGCTGTTTCCTGGCCTGTAGTCTGTATAGCTTCACCAGCTCCCGAATTG
TGG
BO09066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7319-PA | 993 | CG7319-RA | 56..990 | 953..19 | 4625 | 99.7 | Minus |
| CG7319-PC | 1557 | CG7319-RC | 620..1554 | 953..19 | 4625 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB1-RA | 1529 | CG42631-RA | 513..1447 | 953..19 | 4645 | 99.8 | Minus |
| Ccdc56-RA | 1529 | CG42630-RA | 513..1447 | 953..19 | 4645 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11709554..11710488 | 953..19 | 4645 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:00:53 has no hits.
BO09066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:54 Download gff for
BO09066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7319-PC | 620..1557 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:52 Download gff for
BO09066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7319-PC | 620..1557 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:48 Download gff for
BO09066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccdc56-RA | 513..1453 | 13..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:40:08 Download gff for
BO09066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccdc56-RA | 513..1453 | 13..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:40:08 Download gff for
BO09066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11709554..11710494 | 13..953 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:48 Download gff for
BO09066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11702654..11703594 | 13..953 | 99 | | Minus |
BO09066.5prime Sequence
869 bp (782 high quality bases) assembled on 2006-01-10
> BO09066.5prime
GAAGTTATCAGTCGACATGGCCCAACCCAGTGCCCGTGTGCTCCAAAGCG
GCATGCGCCTGCCTCCAATGCCCACAATTCGGGAGCTGGTGAAGCTATAC
AGACTACAGGCCAGGAAACAGCTTAGCCAGAACTTCCTCATGGACGAGCG
GCTCACGGACAAGATAGTCAAGTCGGCGGGACGCATCGATCCCCGGGATT
TAGTTCTTGAGGTGGGTCCCGGGCCGGGCGGTATCACGCGCTCGATTCTG
CGTCGTCACCCACAGCGATTGTTGCTTGTGGAGAAGGATCCGCGCTTCGG
CGAAACACTGCAGTTGCTCAAGGAATGCGCCAGTCCACTAAACATCCAGT
TCGACATCCACTATGATGACATCCTGCGCTTCAACATTGAGCAGCACATC
CCGGACACCTCACAGCGGATCCATCTGATTGGCAACCTGCCGTTCGCCAT
ATCCACTCGACTGTTGATCAATTGGCTTGATGATTTGGCCGCCAGGCGTG
GTGCTTTCCGGCGCATCGACACCTGTATGACTCTTACCTTCCAGCAAGAG
GTGGCCGAGCGAATTTGTGCCCCTGTAGGCGGCGAACAGCGCTGCCGGCT
CTCGGTGATGTCGCAGGTGTGGACGGAACCCGTCATGAAGTTCACCATAC
CGGGCAAGGCGTTCGTTCCGAAACCACAGGTGGATGTGGGCGTCGTCAAG
CTAATTCCCCTAAAGCGCCCTAAGACTCAATTGCCGTTTCACCTAGTTGA
GCGCGTAGTCCGTCACATCTTTAGCATGCGCCAGAAGTACTGTCGCCGAG
GCTATGGCACCCTGCTTCCTCCGAAGATCGCGAGGAAGTTGCTGAGAAGC
TATTTCAGCGCGCCGAAGT
BO09066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7319-PA | 993 | CG7319-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
| CG7319-PC | 1557 | CG7319-RC | 565..1370 | 17..822 | 4030 | 100 | Plus |
| CG7319-PA | 993 | CG7319-RA | 808..854 | 823..869 | 210 | 97.8 | Plus |
| CG7319-PC | 1557 | CG7319-RC | 1372..1418 | 823..869 | 210 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB1-RA | 1529 | CG42631-RA | 458..1311 | 17..869 | 4230 | 99.8 | Plus |
| Ccdc56-RA | 1529 | CG42630-RA | 458..1311 | 17..869 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11709499..11710352 | 17..869 | 4205 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:46:43 has no hits.
BO09066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:55 Download gff for
BO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7319-PC | 560..1418 | 10..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:53 Download gff for
BO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7319-PC | 560..1418 | 10..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:29 Download gff for
BO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccdc56-RA | 454..1311 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:57 Download gff for
BO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccdc56-RA | 454..1311 | 9..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:57 Download gff for
BO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11709499..11710352 | 17..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:29 Download gff for
BO09066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11702599..11703452 | 17..869 | 99 | | Plus |
BO09066.complete Sequence
1024 bp (1024 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631376
> BO09066.complete
GAAGTTATCAGTCGACATGGCCCAACCCAGTGCCCGTGTGCTCCAAAGCG
GCATGCGCCTGCCTCCAATGCCCACAATTCGGGAGCTGGTGAAGCTATAC
AGACTACAGGCCAGGAAACAGCTTAGCCAGAACTTCCTCATGGACGAGCG
GCTCACGGACAAGATAGTCAAGTCGGCGGGACGCATCGATCCCCGGGATT
TAGTTCTTGAGGTGGGTCCCGGGCCGGGCGGTATCACGCGCTCGATTCTG
CGTCGTCACCCACAGCGATTGTTGCTTGTGGAGAAGGATCCGCGCTTCGG
CGAAACACTGCAGTTGCTCAAGGAATGCGCCAGTCCACTAAACATCCAGT
TCGACATCCACTATGATGACATCCTGCGCTTCAACATTGAGCAGCACATC
CCGGACACCTCACAGCGGATCCATCTGATTGGCAACCTGCCGTTCGCCAT
ATCCACTCGACTGTTGATCAATTGGCTTGATGATTTGGCCGCCAGGCGTG
GTGCTTTCCGGCGCATCGACACCTGTATGACTCTTACCTTCCAGCAAGAG
GTGGCCGAGCGAATTTGTGCCCCTGTAGGCGGCGAACAGCGCTGCCGGCT
CTCGGTGATGTCGCAGGTGTGGACGGAACCCGTCATGAAGTTCACCATAC
CGGGCAAGGCGTTCGTTCCGAAACCACAGGTGGATGTGGGCGTCGTCAAG
CTAATTCCCCTAAAGCGCCCTAAGACTCAATTGCCGTTTCACCTAGTTGA
GCGCGTAGTCCGTCACATCTTTAGCATGCGCCAGAAGTACTGTCGCCGAG
GCTATGGCACCCTGCTTCCTCCAGAAGATCGCGAGGAGGTTGCTGAGAAG
CTATTTCAGCGCGCCGAAGTACAGGACACGCTGCGTCCCTTTGAACTAAC
TGTGGAGCAGTGCCTGAGGTTGGCGGAAGTCTATTCGGAGCATCTGGTGA
CGCGACCCGAGGTGGCTGCCTATGATTACCGGGCGCCCAAGAATGTAGAG
GTCCTTGCAAGCTTTCTAGACCAT
BO09066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB1-RA | 993 | CG42631-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB1-RA | 1529 | CG42631-RA | 458..1447 | 17..1006 | 4950 | 100 | Plus |
| Ccdc56-RA | 1529 | CG42630-RA | 458..1447 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11709499..11710488 | 17..1006 | 4950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:24 has no hits.
BO09066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:37 Download gff for
BO09066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB1-RE | 1..993 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:23 Download gff for
BO09066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB1-RE | 417..1425 | 3..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:49 Download gff for
BO09066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccdc56-RA | 458..1447 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:38 Download gff for
BO09066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB1-RE | 417..1425 | 3..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:14 Download gff for
BO09066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccdc56-RA | 458..1447 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:14 Download gff for
BO09066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11709499..11710488 | 17..1008 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:49 Download gff for
BO09066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11702599..11703588 | 17..1008 | 99 | | Plus |
BO09066.pep Sequence
Translation from 16 to 1024
> BO09066.pep
MAQPSARVLQSGMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI
VKSAGRIDPRDLVLEVGPGPGGITRSILRRHPQRLLLVEKDPRFGETLQL
LKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIGNLPFAISTRLL
INWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ
VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRH
IFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCL
RLAEVYSEHLVTRPEVAAYDYRAPKNVEVLASFLDH
BO09066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB1-PA | 330 | CG42631-PA | 1..330 | 1..330 | 1705 | 100 | Plus |
| CG11837-PA | 306 | CG11837-PA | 25..229 | 34..257 | 181 | 29.5 | Plus |
