Clone Sequence Records
BO09067.3prime Sequence
948 bp (844 high quality bases) assembled on 2006-01-10
> BO09067.3prime
ATGGTCTAGAAAGCTTGCTGGTTCCAGCTTGATGGTCGTTTGCTTTATTA
ACGCCAGCACTGCCTCCTGCCGCTCCATATACGCCAGAAAGTTATGTTTC
ATGTCCAGGAACTGCTTCTCCTTGCGCACGAGCGACTGCAGACAGGCGTC
GTTCTGCTGCTCGAGCAAACTGTTCTCCTTGCGCAGCGCCTCCACTATTG
CCATTGTGATCTTGCCCGAGTGCGGCAGTATACTACGTCGCCCTCGTCTC
CTTTTGCTCGCCGAACGTTCGGCGTCCGTCTGGCCACCGTTGGTGTGGCC
TCCATATGGCGCATCCTCTGCCTCGGGCAGGATGTGGTTGGCAGGCGTGA
GAGGCGACCGCTGAATGACACTTTCGGCAGTAGCTCTCTCCAGGTAGTGG
CTAGCCGCGTTTTCCAGCTGCGTCACTGTGGGCTTGTATTCAATATTCAC
CAGCTGGTGGTGTTCGTCTGGCAGAGGCTCTGTCTTCACTACTGCGGGAA
CTAGGGGCTGGGCATCGAGGAAGGTGCATCCCTCTGAGTCGCGCTCAAAT
TTTAGCTGGGCGGGCGAAGTGTATAGCAGTGGCGGCAGGGCGGGCAAATC
CACACGTGCTGTCGCACGGATCGTCTCCAGCACATTGCGGAAATGGAAGA
GGGCGGACGACGGCCAGGCAGGACAGAAGAGGCAATCGATCAGCGCGTAG
AGACGCCAATCCTTCGCGAAGTTCGCATTGCCCCCCACGCGATTGCGATC
GTTCAAATACTTGTTGCGGTAGCTGTTGATGCGCCGGCGAGCCTCCTGCT
TATTGAGCCGAACTCCGTTCTGCTGCANGCCGTGCGCGATTTCCCGGAAA
ATGGGCAGGTTGTCCGTGTAGGAGGGTATGGCATGCAGGTGCTCGCGCCA
CAGCCGCAGTAGCATGGCCTCCTCCAGCGACGTGTAGTAGCGCAATCG
BO09067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-PA | 954 | CG14005-RA | 22..951 | 948..19 | 4631 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 1396 | CG14005-RA | 111..1040 | 948..19 | 4639 | 99.9 | Minus |
CG14005-RB | 1297 | CG14005-RB | 111..1034 | 948..19 | 4539 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5800873..5801608 | 19..754 | 3680 | 100 | Plus |
2L | 23513712 | 2L | 5801671..5801865 | 754..948 | 964 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:41:46 has no hits.
BO09067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:56 Download gff for
BO09067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 22..954 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:55 Download gff for
BO09067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 22..954 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:37 Download gff for
BO09067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 111..1040 | 19..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:33 Download gff for
BO09067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 111..1040 | 19..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:33 Download gff for
BO09067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5801672..5801865 | 755..948 | 99 | | Plus |
2L | 5800871..5801608 | 19..754 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:37 Download gff for
BO09067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5801672..5801865 | 755..948 | 99 | | Plus |
arm_2L | 5800871..5801608 | 19..754 | 99 | <- | Plus |
BO09067.5prime Sequence
935 bp (859 high quality bases) assembled on 2006-01-10
> BO09067.5prime
GAAGTTATCAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACT
ACACGTCGCTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTG
CATGCCATACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGC
GCACGGCCTGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCC
GGCGCATCAACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTG
GGGGGCAATGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGA
TTGCCTCTTCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCA
ATGTGCTGGAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTG
CCGCCACTGCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTC
AGAGGGATGCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGA
AGACAGAGCCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATAC
AAGCCCACAGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAG
AGCTACTGCCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACC
ACATCCTGCCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGT
GGCCAGACGGACGCCGAACGTTCGGCGAGCAAAAGGAGACGAGGGCGACG
TAGTATACTGCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGC
TGCGCAAGGAGAACAGTTTGCTCGAGCAGCAGAACGACGCCTGTCTGCAG
TCGCTCGTGCGCAAGGAGAAGCAGTTCCTGGACATGAAACATAACTTTCT
GGCGTATATGGAGCGGCAGGAGGCAGTGCTGGCGT
BO09067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-PA | 954 | CG14005-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 1396 | CG14005-RA | 90..1008 | 17..935 | 4595 | 100 | Plus |
CG14005-RB | 1297 | CG14005-RB | 90..1002 | 17..935 | 4495 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5800905..5801608 | 935..232 | 3520 | 100 | Minus |
2L | 23513712 | 2L | 5801671..5801886 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:59:07 has no hits.
BO09067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:57 Download gff for
BO09067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:57 Download gff for
BO09067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:32 Download gff for
BO09067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..1008 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:54 Download gff for
BO09067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..1008 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:54 Download gff for
BO09067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5800905..5801608 | 232..935 | 100 | <- | Minus |
2L | 5801672..5801886 | 17..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:32 Download gff for
BO09067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5800905..5801608 | 232..935 | 100 | <- | Minus |
arm_2L | 5801672..5801886 | 17..231 | 100 | | Minus |
BO09067.complete Sequence
985 bp (985 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631377
> BO09067.complete
GAAGTTATCAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACT
ACACGTCGCTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTG
CATGCCATACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGC
GCACGGCCTGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCC
GGCGCATCAACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTG
GGGGGCAATGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGA
TTGCCTCTTCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCA
ATGTGCTGGAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTG
CCGCCACTGCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTC
AGAGGGATGCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGA
AGACAGAGCCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATAC
AAGCCCACAGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAG
AGCTACTGCCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACC
ACATCCTGCCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGT
GGCCAGACGGACGCCGAACGTTCGGCGAGCAAAAGGAGACGAGGGCGACG
TAGTATACTGCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGC
TGCGCAAGGAGAACAGTTTGCTCGAGCAGCAGAACGACGCCTGTCTGCAG
TCGCTCGTGCGCAAGGAGAAGCAGTTCCTGGACATGAAACATAACTTTCT
GGCGTATATGGAGCGGCAGGAGGCAGTGCTGGCGTTAATAAAGCAAACGA
CCATCAAGCTGGAACCAGCAAGCTTTCTAGACCAT
BO09067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 954 | CG14005-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
CG14005-RB | 948 | CG14005-PB | 1..945 | 17..967 | 4630 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-RA | 1396 | CG14005-RA | 90..1040 | 17..967 | 4755 | 100 | Plus |
CG14005-RB | 1297 | CG14005-RB | 90..1034 | 17..967 | 4630 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5800873..5801608 | 967..232 | 3680 | 100 | Minus |
2L | 23513712 | 2L | 5801671..5801886 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:15:53 has no hits.
BO09067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:39 Download gff for
BO09067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:30 Download gff for
BO09067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 84..1034 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:21 Download gff for
BO09067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..1040 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:39 Download gff for
BO09067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 84..1034 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:25 Download gff for
BO09067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14005-RA | 90..1040 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:25 Download gff for
BO09067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5800870..5801608 | 232..969 | 99 | <- | Minus |
2L | 5801672..5801886 | 17..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:21 Download gff for
BO09067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5800870..5801608 | 232..969 | 99 | <- | Minus |
arm_2L | 5801672..5801886 | 17..231 | 100 | | Minus |
BO09067.pep Sequence
Translation from 16 to 985
> BO09067.pep
MSGQKHLRLRYYTSLEEAMLLRLWREHLHAIPSYTDNLPIFREIAHGLQQ
NGVRLNKQEARRRINSYRNKYLNDRNRVGGNANFAKDWRLYALIDCLFCP
AWPSSALFHFRNVLETIRATARVDLPALPPLLYTSPAQLKFERDSEGCTF
LDAQPLVPAVVKTEPLPDEHHQLVNIEYKPTVTQLENAASHYLERATAES
VIQRSPLTPANHILPEAEDAPYGGHTNGGQTDAERSASKRRRGRRSILPH
SGKITMAIVEALRKENSLLEQQNDACLQSLVRKEKQFLDMKHNFLAYMER
QEAVLALIKQTTIKLEPASFLDH
BO09067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14005-PA | 317 | CG14005-PA | 1..317 | 1..317 | 1651 | 100 | Plus |
CG14005-PB | 315 | CG14005-PB | 1..315 | 1..317 | 1627 | 99.4 | Plus |