Clone Sequence Records
BO09068.3prime Sequence
956 bp (824 high quality bases) assembled on 2006-01-10
> BO09068.3prime
ATGGTCTAGAAAGCTTGCCTTAAACGGCTTCTCGGTCATAAGAAGACCAT
GCTCCCACAGGGCGGTGGCGACCTCTATCTTGCGAGCTGAAGACTCCAAT
GGCAACTGATCAATGGTGAGGTAAAATGGATAGGCCGATATGAGGAGCTC
AACGGCTTTAGCTTCCTCTGGCAGAATCTCCATGAAATAGGGCTCGTACT
TGCAGTAATCCAGGCCATTGTCCACATGGTGGTAGATACGCACGCTGCCA
TCGGACTCGGTCACCAGACGCAGAATGTTGGCACGCAGCAGGCGCACGGA
TGTCTTTTTATTGAATTTGTAATCGCAGACGCAGTTGCCCTGCTCATCGG
CATCACTGCGTGCCCCATGAACAGTGCGCACCTCCTCCGAGGGCAATACG
ATCGGCGGAAGTGCCTCGTGCTGGAACTTCTTGGCCATCTGGTCGACGGC
CTCATCAATATCATCTTCGGAGGGCATCAAGTAATTGGTCACCAGCTTCT
GCACATTCTCCACCAGCTGTTTGCGCGACCCGCAGTCATTTCCCTTGTAG
GCATTGCCCAAAACTTGAAAAGTGTGCAGCGGCAAGCCGCGACGCAAGGC
CACACTCCGATCGACGGCCTTCTTAAGAACCATGGGCATTAGTGTCTCTA
GAAGATTGGCATATGCCTGCTGTTGGTAAACACTCAAGGTAATGTGCAGC
GAGTGCTGTTGCTCTTCGGTGATGGCCTGGTGAACAGCGCCTCTCGGGAA
ATATAGTACATCGCCGGCGCTTAGTACCTCATCAATTATGGGCTTACCCA
GCTGCTCTTGATCATAGTTGCCCGACGAGATCCTGGCCAGTTGATCGGCC
TTCTTGGGCGGCTCGTACAAAAGCCAGCGCTTGCGTCCCTCCACTTGGAT
AACGAAAGCCTCGATGTCATCGTAATGGGGCGCAAAGCCCTGGCTATTGG
GTGGGG
BO09068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-PB | 1962 | CG2982-RB | 1022..1959 | 956..19 | 4690 | 100 | Minus |
| CG2982-PA | 1962 | CG2982-RA | 1022..1959 | 956..19 | 4690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 2242 | CG2982-RC | 1146..2083 | 956..19 | 4690 | 100 | Minus |
| CG2982-RB | 2246 | CG2982-RB | 1150..2087 | 956..19 | 4690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4320649..4321586 | 956..19 | 4690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:11:26 has no hits.
BO09068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:58 Download gff for
BO09068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PB | 1022..1962 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:00:58 Download gff for
BO09068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PA | 1022..1962 | 18..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:20:37 Download gff for
BO09068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 1150..2087 | 19..956 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:18 Download gff for
BO09068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 1150..2087 | 19..956 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:18 Download gff for
BO09068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4320649..4321586 | 19..956 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:20:37 Download gff for
BO09068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4214682..4215619 | 19..956 | 100 | | Minus |
BO09068.5prime Sequence
907 bp (855 high quality bases) assembled on 2006-01-10
> BO09068.5prime
GAAGTTATCAGTCGACATGAAAAAGGCGACTACTTCCGCGGCCGCCAAGT
CTCAAGGCAACAGCAAAATGCAGAAAAACGCAAATAACGGCACAGCTAAA
GACAAGAAGAAGCCCAATCTAGATAAAGAATCGAATGATTCCAATTCGGT
ATCTGATATGCTCGCCGTAACCAAGGACCAAGAGGTGCATGCCTTTTTCT
CTAAATTATTCGACGATGACGCCGGTCCATCAACATCCAAAAAGACCCAG
TCAGGGTCAGCCGCAGCCGCTAAGACCGCAGATCGCAAGCGACGTCTTCA
GGCCGAGGCGGATGCCAACAATAATGATACCGGAAAAGCCGGTAAGTTGA
CCAAGGAATCGGAAGCTACTCAAGGAGCCAGGGCCACCAAACGCAAGCAA
GCACGTAGTCTGGGACTGGAGCGCACCTCGCCGATCCAGGTTAATGGCGC
GGCTTTAGCCTGCCCTTTGGTGCGCAAATCGCTGCCCCCAGGGGAGGCCA
ATTCCTGTCCTCAGCCGCCCAAAAAGGACCCAGCAGCCGTGAACTCATTA
GTTAAAATAATTAAGGCGGAACCCACCGAAGAGGGCAATAATAACAATGA
CGAAAAGGAGACTGAAACAATAGAAACTCACAAAGCCGACAGCGTCGAAG
AGGGTCGTCGCGTCCTGCAGTGGATACTCTTTCCGGTCCAAACTAAAGTC
TTCTTCAAAGACTTCTGGGAGCACACCGCCTGCCTGGTGCAGCGCTCTAA
TCCCAAATACTTTCAAAGTATGATATCATTCAAGATGCTTGACGAAATAC
TGATTCGCCATCATTTGGACTTCACCGTCAACGTGGATGTGACCACTTAC
AAGAACGGCAAGCGTGAGACACTGAATCCCGAGGGTCGTGCCTTGGCACC
AGCTGTG
BO09068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-PB | 1962 | CG2982-RB | 1..891 | 17..907 | 4430 | 99.8 | Plus |
| CG2982-PA | 1962 | CG2982-RA | 1..891 | 17..907 | 4430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 2242 | CG2982-RC | 125..1015 | 17..907 | 4440 | 99.9 | Plus |
| CG2982-RB | 2246 | CG2982-RB | 129..1019 | 17..907 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4319628..4320518 | 17..907 | 4440 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:45:34 has no hits.
BO09068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:00:59 Download gff for
BO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PB | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:01 Download gff for
BO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:45 Download gff for
BO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..1019 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:14 Download gff for
BO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..1019 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:14 Download gff for
BO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4319628..4320518 | 17..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:45 Download gff for
BO09068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4213661..4214551 | 17..907 | 99 | | Plus |
BO09068.complete Sequence
1993 bp (1993 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631378
> BO09068.complete
GAAGTTATCAGTCGACATGAAAAAGGCGACTACTTCCGCGGCCGCCAAGT
CTCAAGGCAACAGCAAAATGCAGAAAAACGCAAATAACGGCACAGCTAAA
GACAAGAAGAAGCCCAATCTAGATAAAGAATCGAATGATTCCAATTCGGT
ATCTGATATGCTCGCCGTAACCAAGGACCAAGAGGTGCATGCCTTTTTCT
CTAAATTATTCGACGATGACGCCGGTCCATCAACATCCAAAAAGACCCAG
TCAGGGTCAGCCGCAGCCGCTAAGACCGCAGATCGCAAGCGACGTCTTCA
GGCCGAGGCGGATGCCAACAATAATGATACCGGAAAAGCCGGTAAGTTGA
CCAAGGAATCGGAAGCTACTCAAGGAGCCAGGGCCACCAAACGCAAGCAA
GCACGTAGTCTGGGACTGGAGCGCACCTCGCCGATCCAGGTTAATGGCGC
GGCTTTAGCCTGCCCTTTGGTGCGCAAATCGCTGCCCCCAGGGGAGGCCA
ATTCCTGTCCTCAGCCGCCCAAAAAGGACCCAGCAGCCGTGAACTCATTA
GTTAAAATAATTAAGGCGGAACCCACCGAAGAGGGCAATAATAACAATGA
CGAAAAGGAGACTGAAACAATAGAAACTCACAAAGCCGACAGCGTCGAAG
AGGGTCGTCGCGTCCTGCAGTGGATACTCTTTCCGGTCCAAACTAAAGTC
TTCTTCAAAGACTTCTGGGAGCACACCGCCTGCCTGGTGCAGCGCTCTAA
TCCCAAATACTTTCAAAGTATGATATCATTCAAGATGCTTGACGAAATAC
TGATTCGCCATCATTTGGACTTCACCGTCAACGTGGATGTGACCACTTAC
AAGAACGGCAAGCGTGAGACACTGAATCCCGAGGGTCGTGCCTTGCCACC
AGCTGTGTGGGGCTTCTATTCGGACGGCTGCAGCATTCGTTTACTGAATC
CTTCCACCTATCTAATTCGCTTGCGTCAGGTGTGCACCGTTTTGCAGGAG
TTCTTTCACTGCAAGGTGGGGGCAAATCTATACCTAACCCCACCCAATAG
CCAGGGCTTTGCGCCCCATTACGATGACATCGAGGCTTTCGTTATCCAAG
TGGAGGGACGCAAGCGCTGGCTTTTGTACGAGCCGCCCAAGAAGGCCGAT
CAACTGGCCAGGATCTCGTCGGGCAACTATGATCAAGAGCAGCTGGGTAA
GCCCATAATTGATGAGGTACTAAGCGCCGGCGATGTACTATATTTCCCGA
GAGGCGCTGTTCACCAGGCCATCACCGAAGAGCAACAGCACTCGCTGCAC
ATTACCTTGAGTGTTTACCAACAGCAGGCATATGCCAATCTTCTAGAGAC
ACTAATGCCCATGGTTCTTAAGAAGGCCGTCGATCGGAGTGTGGCCTTGC
GTCGCGGCTTGCCGCTGCACACTTTTCAAGTTTTGGGCAATGCCTACAAG
GGAAATGACTGCGGGTCGCGCAAACAGCTGGTGGAGAATGTGCAGAAGCT
GGTGACCAATTACTTGATGCCCTCCGAAGATGATATTGATGAGGCCGTCG
ACCAGATGGCCAAGAAGTTCCAGCACGAGGCACTTCCGCCGATCGTATTG
CCCTCGGAGGAGGTGCGCACTGTTCATGGGGCACGCAGTGATGCCGATGA
GCAGGGCAACTGCGTCTGCGATTACAAATTCAATAAAAAGACATCCGTGC
GCCTGCTGCGTGCCAACATTCTGCGTCTGGTGACCGAGTCCGATGGCAGC
GTGCGTATCTACCACCATGTGGACAATGGCCTGGATTACTGCAAGTACGA
GCCCTATTTCATGGAGATTCTGCCAGAGGAAGCTAAAGCCGTTGAGCTCC
TCATATCGGCCTATCCATTTTACCTCACCATTGATCAGTTGCCATTGGAG
TCTTCAGCTCGCAAGATAGAGGTCGCCACCGCCCTGTGGGAGCATGGTCT
TCTTATGACCGAGAAGCCGTTTAAGGCAAGCTTTCTAGACCAT
BO09068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 1962 | CG2982-PC | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| CG2982-RB | 1962 | CG2982-PB | 1..1959 | 17..1975 | 9795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-RC | 2242 | CG2982-RC | 125..2083 | 17..1975 | 9795 | 100 | Plus |
| CG2982-RB | 2246 | CG2982-RB | 129..2087 | 17..1975 | 9795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4319628..4321586 | 17..1975 | 9795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:24:42 has no hits.
BO09068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:38 Download gff for
BO09068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RA | 1..1962 | 17..1976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:42 Download gff for
BO09068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RA | 74..2032 | 17..1975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:41 Download gff for
BO09068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..2087 | 17..1977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:39 Download gff for
BO09068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RA | 74..2032 | 17..1975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:59 Download gff for
BO09068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2982-RB | 129..2087 | 17..1977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:59 Download gff for
BO09068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4319628..4321586 | 17..1977 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:41 Download gff for
BO09068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4213661..4215619 | 17..1977 | 99 | | Plus |
BO09068.pep Sequence
Translation from 16 to 1993
> BO09068.pep
MKKATTSAAAKSQGNSKMQKNANNGTAKDKKKPNLDKESNDSNSVSDMLA
VTKDQEVHAFFSKLFDDDAGPSTSKKTQSGSAAAAKTADRKRRLQAEADA
NNNDTGKAGKLTKESEATQGARATKRKQARSLGLERTSPIQVNGAALACP
LVRKSLPPGEANSCPQPPKKDPAAVNSLVKIIKAEPTEEGNNNNDEKETE
TIETHKADSVEEGRRVLQWILFPVQTKVFFKDFWEHTACLVQRSNPKYFQ
SMISFKMLDEILIRHHLDFTVNVDVTTYKNGKRETLNPEGRALPPAVWGF
YSDGCSIRLLNPSTYLIRLRQVCTVLQEFFHCKVGANLYLTPPNSQGFAP
HYDDIEAFVIQVEGRKRWLLYEPPKKADQLARISSGNYDQEQLGKPIIDE
VLSAGDVLYFPRGAVHQAITEEQQHSLHITLSVYQQQAYANLLETLMPMV
LKKAVDRSVALRRGLPLHTFQVLGNAYKGNDCGSRKQLVENVQKLVTNYL
MPSEDDIDEAVDQMAKKFQHEALPPIVLPSEEVRTVHGARSDADEQGNCV
CDYKFNKKTSVRLLRANILRLVTESDGSVRIYHHVDNGLDYCKYEPYFME
ILPEEAKAVELLISAYPFYLTIDQLPLESSARKIEVATALWEHGLLMTEK
PFKASFLDH
BO09068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2982-PC | 653 | CG2982-PC | 1..653 | 1..653 | 3390 | 100 | Plus |
| CG2982-PB | 653 | CG2982-PB | 1..653 | 1..653 | 3390 | 100 | Plus |
