Clone Sequence Records
BO09069.3prime Sequence
878 bp (790 high quality bases) assembled on 2006-01-10
> BO09069.3prime
ATGGTCTAGAAAGCTTGCGTTGTCAATCTCCAGAGGCTTGGCCTCCTCCC
ACGAGAAGCCCGCGCGACCGAAGTGTCCATAAGTGCTTGTTCGCTGGTAT
ATCGGCTGGCGCAGGTTTAGGTCCTTGACAATCTTGCCGGGCCTGAGGTC
AAAGTTTCGACGGATGATATCCAGAAGTTCTTTTTGTGACTTGTGAGAAG
TTCCGTAGTCGAACACAGTTATGGAGAGAGGCTCAGCAAGACCTATGGCG
TAGGACACTTGGACAAGGCAGCGCTTGCAGAGACCGGCCTTAACCAGTGA
TTTGGCCACCCAGCGTGCTGCATATGCAGCTGATCTGTCAACCTTGGTGA
AGTCCTTGCCAGAGAATGCACCGCCGCCGTGGGCGCCCCAGCCTCCGTAA
GTATCTACAATGATTTTTCTTCCTGTAAGCCCAGCGTCACCCATTGGTCC
ACCGATTACAAAAAGCCCACAAGGATTGATGTGGACAATGGTGTTGGCAT
CAATGTATTTGGCGGGAATGACTACTTTAACAACTTTCTCCATTACTTCC
GAGCGCAGGGTTTCTAACGATATCTTTTCAGAATGCTGCATGGACACTAC
AATAGTGTGGACACGCTTGGGAACTGCTGATCCCTGATTGAAGAGGTACT
CGCAGGTTACTTGTGTTTTGGAATCGGGGCGAGCCCACCAGAACACATCT
GAGCGACGCAGCTCAGCAATCTTTTCGTTTAGTTTGTGAGCCAAAACGAC
GGTTAGGGGCATACATTCCTCGGTTTCGTCGGTGGCATATCCAAACATGA
TACCCTGATCTCCGGCACCGATCTCTTCCTCGGCACGGTTGACATGCACT
CCCGCAGCGATCTCAGGCGATTGTTGGT
BO09069.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2674-PD | 1227 | M(2)21AB-RD | 365..1224 | 878..19 | 4300 | 100 | Minus |
CG2674-PH | 1227 | M(2)21AB-RH | 365..1224 | 878..19 | 4300 | 100 | Minus |
CG2674-PF | 1227 | M(2)21AB-RF | 365..1224 | 878..19 | 4300 | 100 | Minus |
CG2674-PI | 1227 | M(2)21AB-RI | 365..1224 | 878..19 | 4300 | 100 | Minus |
CG2674-PA | 1227 | M(2)21AB-RA | 365..1224 | 878..19 | 4300 | 100 | Minus |
CG2674-PE | 1227 | M(2)21AB-RE | 365..1224 | 878..19 | 4300 | 100 | Minus |
CG2674-PC | 1227 | M(2)21AB-RC | 436..1224 | 807..19 | 3945 | 100 | Minus |
CG2674-PJ | 1227 | M(2)21AB-RJ | 436..1224 | 807..19 | 3945 | 100 | Minus |
CG2674-PG | 1146 | M(2)21AB-RG | 355..1143 | 807..19 | 3945 | 100 | Minus |
CG2674-PB | 603 | M(2)21AB-RB | 478..603 | 878..753 | 630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sam-S-RE | 2387 | CG2674-RE | 635..1494 | 878..19 | 4300 | 100 | Minus |
Sam-S-RA | 2293 | CG2674-RA | 541..1400 | 878..19 | 4300 | 100 | Minus |
Sam-S-RB | 2184 | CG2674-RB | 654..1513 | 878..19 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 112687..113370 | 807..124 | 3420 | 100 | Minus |
2L | 23513712 | 2L | 113434..113539 | 124..19 | 530 | 100 | Minus |
2L | 23513712 | 2L | 111946..112020 | 878..804 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:22:04 has no hits.
BO09069.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:00 Download gff for
BO09069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2674-PI | 365..1227 | 16..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:02 Download gff for
BO09069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2674-PF | 365..1227 | 16..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:04 Download gff for
BO09069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sam-S-RB | 654..1513 | 19..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:33 Download gff for
BO09069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sam-S-RB | 654..1513 | 19..878 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:33 Download gff for
BO09069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 111946..112019 | 805..878 | 100 | -> | Minus |
2L | 112690..113369 | 125..804 | 100 | -> | Minus |
2L | 113434..113539 | 19..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:04 Download gff for
BO09069.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 111946..112019 | 805..878 | 100 | -> | Minus |
arm_2L | 112690..113369 | 125..804 | 100 | -> | Minus |
arm_2L | 113434..113539 | 19..124 | 100 | | Minus |
BO09069.5prime Sequence
962 bp (814 high quality bases) assembled on 2006-01-10
> BO09069.5prime
GAAGTTATCAGTCGACATGCCGCAAAAGACAAACGGACATAGCGCCAACG
GATGCAACGGCAGCAATGGCAACTCATATGACATGGAAGACGGAGCTACA
TTCCTGTTCACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAAAATGTG
CGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAA
ACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTG
TGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCG
TGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATT
TCAAAACGTGCAATGTGCTGTTGGCATTGGACCAACAATCGCCTGAGATC
GCTGCGGGAGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGCCGGAGA
TCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGC
CCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTG
CGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGT
AACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCC
ACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACC
CTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAA
ATACATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTG
TAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATT
GTAGATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGTGCATTCTCTGG
CAGGGACTTCACCAAGGTTGACAGATCAGCTGCATATGCAGCACGCTGGG
TGGGCAAATCAC
BO09069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2674-PD | 1227 | M(2)21AB-RD | 1..946 | 17..962 | 4680 | 99.7 | Plus |
CG2674-PH | 1227 | M(2)21AB-RH | 1..946 | 17..962 | 4680 | 99.7 | Plus |
CG2674-PF | 1227 | M(2)21AB-RF | 1..946 | 17..962 | 4680 | 99.7 | Plus |
CG2674-PI | 1227 | M(2)21AB-RI | 1..946 | 17..962 | 4680 | 99.7 | Plus |
CG2674-PA | 1227 | M(2)21AB-RA | 1..946 | 17..962 | 4680 | 99.7 | Plus |
CG2674-PE | 1227 | M(2)21AB-RE | 1..946 | 17..962 | 4680 | 99.7 | Plus |
CG2674-PC | 1227 | M(2)21AB-RC | 436..946 | 452..962 | 2505 | 99.6 | Plus |
CG2674-PJ | 1227 | M(2)21AB-RJ | 436..946 | 452..962 | 2505 | 99.6 | Plus |
CG2674-PG | 1146 | M(2)21AB-RG | 355..865 | 452..962 | 2505 | 99.6 | Plus |
CG2674-PC | 1227 | M(2)21AB-RC | 1..334 | 17..350 | 1670 | 100 | Plus |
CG2674-PJ | 1227 | M(2)21AB-RJ | 1..334 | 17..350 | 1670 | 100 | Plus |
CG2674-PB | 603 | M(2)21AB-RB | 1..334 | 17..350 | 1670 | 100 | Plus |
CG2674-PG | 1146 | M(2)21AB-RG | 43..253 | 140..350 | 1055 | 100 | Plus |
CG2674-PB | 603 | M(2)21AB-RB | 438..603 | 341..506 | 830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sam-S-RE | 2387 | CG2674-RE | 269..1216 | 15..962 | 4710 | 99.8 | Plus |
Sam-S-RA | 2293 | CG2674-RA | 175..1122 | 15..962 | 4710 | 99.8 | Plus |
Sam-S-RI | 2429 | CG2674-RI | 311..1258 | 15..962 | 4710 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 112687..113197 | 452..962 | 2525 | 99.6 | Plus |
2L | 23513712 | 2L | 110754..110879 | 218..343 | 630 | 100 | Plus |
2L | 23513712 | 2L | 108684..108809 | 15..140 | 630 | 100 | Plus |
2L | 23513712 | 2L | 111906..112020 | 341..455 | 575 | 100 | Plus |
2L | 23513712 | 2L | 110404..110483 | 139..218 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:51:42 has no hits.
BO09069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:01 Download gff for
BO09069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2674-PI | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:04 Download gff for
BO09069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2674-PF | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:18:38 Download gff for
BO09069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sam-S-RI | 306..1258 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:16 Download gff for
BO09069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sam-S-RI | 306..1258 | 9..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:16 Download gff for
BO09069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 108679..108809 | 9..140 | 98 | -> | Plus |
2L | 110406..110483 | 141..218 | 100 | -> | Plus |
2L | 110755..110877 | 219..341 | 100 | -> | Plus |
2L | 111907..112019 | 342..454 | 100 | -> | Plus |
2L | 112690..113197 | 455..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:18:38 Download gff for
BO09069.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 108679..108809 | 9..140 | 98 | -> | Plus |
arm_2L | 110406..110483 | 141..218 | 100 | -> | Plus |
arm_2L | 110755..110877 | 219..341 | 100 | -> | Plus |
arm_2L | 111907..112019 | 342..454 | 100 | -> | Plus |
arm_2L | 112690..113197 | 455..962 | 99 | | Plus |
BO09069.complete Sequence
1258 bp assembled on 2006-12-18
GenBank Submission: FJ631379
> BO09069.complete
GAAGTTATCAGTCGACATGCCGCAAAAGACAAACGGACATAGCGCCAACG
GATGCAACGGCAGCAATGGCAACTCATATGACATGGAAGACGGAGCTACA
TTCCTGTTCACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAAAATGTG
CGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAA
ACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTG
TGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCG
TGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATT
TCAAAACGTGCAATGTGCTGTTGGCATTGGACCAACAATCGCCTGAGATC
GCTGCGGGAGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGCCGGAGA
TCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGC
CCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTG
CGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGT
AACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCC
ACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACC
CTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAA
ATACATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTG
TAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATT
GTAGATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGTGCATTCTCTGG
CAAGGACTTCACCAAGGTTGACAGATCAGCTGCATATGCAGCACGCTGGG
TGGCCAAATCACTGGTTAAGGCCGGTCTCTGCAAGCGCTGCCTTGTCCAA
GTGTCCTACGCCATAGGTCTTGCTGAGCCTCTCTCCATAACTGTGTTCGA
CTACGGAACTTCTCACAAGTCACAAAAAGAACTTCTGGATATCATCCGTC
GAAACTTTGACCTCAGGCCCGGCAAGATTGTCAAGGACCTAAACCTGCGC
CAGCCGATATACCAGCGAACAAGCACTTATGGACACTTCGGTCGCGCGGG
CTTCTCGTGGGAGGAGGCCAAGCCTCTGGAGATTGACAACGCAAGCTTTC
TAGACCAT
BO09069.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sam-S-RE | 1227 | CG2674-PE | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Sam-S-RA | 1227 | CG2674-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Sam-S-RI | 1227 | CG2674-PI | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sam-S-RE | 2387 | CG2674-RE | 269..1494 | 15..1240 | 6130 | 100 | Plus |
Sam-S-RA | 2293 | CG2674-RA | 175..1400 | 15..1240 | 6130 | 100 | Plus |
Sam-S-RI | 2429 | CG2674-RI | 311..1536 | 15..1240 | 6130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 112687..113370 | 452..1135 | 3420 | 100 | Plus |
2L | 23513712 | 2L | 108684..108809 | 15..140 | 630 | 100 | Plus |
2L | 23513712 | 2L | 110754..110879 | 218..343 | 630 | 100 | Plus |
2L | 23513712 | 2L | 111906..112020 | 341..455 | 575 | 100 | Plus |
2L | 23513712 | 2L | 113434..113539 | 1135..1240 | 530 | 100 | Plus |
2L | 23513712 | 2L | 110404..110483 | 139..218 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:14 has no hits.
BO09069.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:03 Download gff for
BO09069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M(2)21AB-RF | 1..1227 | 17..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:34 Download gff for
BO09069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M(2)21AB-RH | 400..1623 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:15 Download gff for
BO09069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sam-S-RI | 313..1536 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:03 Download gff for
BO09069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M(2)21AB-RH | 393..1623 | 9..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:56 Download gff for
BO09069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sam-S-RI | 313..1536 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:56 Download gff for
BO09069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 108686..108809 | 17..140 | 100 | -> | Plus |
2L | 110406..110483 | 141..218 | 100 | -> | Plus |
2L | 110755..110877 | 219..341 | 100 | -> | Plus |
2L | 111907..112019 | 342..454 | 100 | -> | Plus |
2L | 113434..113539 | 1135..1242 | 98 | | Plus |
2L | 112690..113369 | 455..1134 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:15 Download gff for
BO09069.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 110755..110877 | 219..341 | 100 | -> | Plus |
arm_2L | 111907..112019 | 342..454 | 100 | -> | Plus |
arm_2L | 110406..110483 | 141..218 | 100 | -> | Plus |
arm_2L | 108686..108809 | 17..140 | 100 | -> | Plus |
arm_2L | 112690..113369 | 455..1134 | 100 | -> | Plus |
arm_2L | 113434..113539 | 1135..1242 | 98 | | Plus |
BO09069.pep Sequence
Translation from 16 to 1258
> BO09069.pep
MPQKTNGHSANGCNGSNGNSYDMEDGATFLFTSESVGEGHPDKMCDQISD
AILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQH
IGYDDSSKGFDFKTCNVLLALDQQSPEIAAGVHVNRAEEEIGAGDQGIMF
GYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYL
FNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDAN
TIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTK
VDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSH
KSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEE
AKPLEIDNASFLDH
BO09069.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sam-S-PE | 408 | CG2674-PE | 1..408 | 1..408 | 2144 | 100 | Plus |
Sam-S-PA | 408 | CG2674-PA | 1..408 | 1..408 | 2144 | 100 | Plus |
Sam-S-PI | 408 | CG2674-PI | 1..408 | 1..408 | 2144 | 100 | Plus |
Sam-S-PF | 408 | CG2674-PF | 1..408 | 1..408 | 2144 | 100 | Plus |
Sam-S-PH | 408 | CG2674-PH | 1..408 | 1..408 | 2144 | 100 | Plus |