Clone BO09069 Report

Search the DGRC for BO09069

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptSam-S-RD
Protein status:BO09069.pep:
Sequenced Size:1258

Clone Sequence Records

BO09069.3prime Sequence

878 bp (790 high quality bases) assembled on 2006-01-10

> BO09069.3prime
ATGGTCTAGAAAGCTTGCGTTGTCAATCTCCAGAGGCTTGGCCTCCTCCC
ACGAGAAGCCCGCGCGACCGAAGTGTCCATAAGTGCTTGTTCGCTGGTAT
ATCGGCTGGCGCAGGTTTAGGTCCTTGACAATCTTGCCGGGCCTGAGGTC
AAAGTTTCGACGGATGATATCCAGAAGTTCTTTTTGTGACTTGTGAGAAG
TTCCGTAGTCGAACACAGTTATGGAGAGAGGCTCAGCAAGACCTATGGCG
TAGGACACTTGGACAAGGCAGCGCTTGCAGAGACCGGCCTTAACCAGTGA
TTTGGCCACCCAGCGTGCTGCATATGCAGCTGATCTGTCAACCTTGGTGA
AGTCCTTGCCAGAGAATGCACCGCCGCCGTGGGCGCCCCAGCCTCCGTAA
GTATCTACAATGATTTTTCTTCCTGTAAGCCCAGCGTCACCCATTGGTCC
ACCGATTACAAAAAGCCCACAAGGATTGATGTGGACAATGGTGTTGGCAT
CAATGTATTTGGCGGGAATGACTACTTTAACAACTTTCTCCATTACTTCC
GAGCGCAGGGTTTCTAACGATATCTTTTCAGAATGCTGCATGGACACTAC
AATAGTGTGGACACGCTTGGGAACTGCTGATCCCTGATTGAAGAGGTACT
CGCAGGTTACTTGTGTTTTGGAATCGGGGCGAGCCCACCAGAACACATCT
GAGCGACGCAGCTCAGCAATCTTTTCGTTTAGTTTGTGAGCCAAAACGAC
GGTTAGGGGCATACATTCCTCGGTTTCGTCGGTGGCATATCCAAACATGA
TACCCTGATCTCCGGCACCGATCTCTTCCTCGGCACGGTTGACATGCACT
CCCGCAGCGATCTCAGGCGATTGTTGGT

BO09069.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2674-PD 1227 M(2)21AB-RD 365..1224 878..19 4300 100 Minus
CG2674-PH 1227 M(2)21AB-RH 365..1224 878..19 4300 100 Minus
CG2674-PF 1227 M(2)21AB-RF 365..1224 878..19 4300 100 Minus
CG2674-PI 1227 M(2)21AB-RI 365..1224 878..19 4300 100 Minus
CG2674-PA 1227 M(2)21AB-RA 365..1224 878..19 4300 100 Minus
CG2674-PE 1227 M(2)21AB-RE 365..1224 878..19 4300 100 Minus
CG2674-PC 1227 M(2)21AB-RC 436..1224 807..19 3945 100 Minus
CG2674-PJ 1227 M(2)21AB-RJ 436..1224 807..19 3945 100 Minus
CG2674-PG 1146 M(2)21AB-RG 355..1143 807..19 3945 100 Minus
CG2674-PB 603 M(2)21AB-RB 478..603 878..753 630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 2387 CG2674-RE 635..1494 878..19 4300 100 Minus
Sam-S-RA 2293 CG2674-RA 541..1400 878..19 4300 100 Minus
Sam-S-RB 2184 CG2674-RB 654..1513 878..19 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 112687..113370 807..124 3420 100 Minus
2L 23513712 2L 113434..113539 124..19 530 100 Minus
2L 23513712 2L 111946..112020 878..804 375 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:22:04 has no hits.

BO09069.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:00 Download gff for BO09069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PI 365..1227 16..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:02 Download gff for BO09069.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PF 365..1227 16..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:04 Download gff for BO09069.3prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RB 654..1513 19..878 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:33 Download gff for BO09069.3prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RB 654..1513 19..878 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:33 Download gff for BO09069.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 111946..112019 805..878 100 -> Minus
2L 112690..113369 125..804 100 -> Minus
2L 113434..113539 19..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:04 Download gff for BO09069.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 111946..112019 805..878 100 -> Minus
arm_2L 112690..113369 125..804 100 -> Minus
arm_2L 113434..113539 19..124 100   Minus

BO09069.5prime Sequence

962 bp (814 high quality bases) assembled on 2006-01-10

> BO09069.5prime
GAAGTTATCAGTCGACATGCCGCAAAAGACAAACGGACATAGCGCCAACG
GATGCAACGGCAGCAATGGCAACTCATATGACATGGAAGACGGAGCTACA
TTCCTGTTCACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAAAATGTG
CGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAA
ACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTG
TGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCG
TGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATT
TCAAAACGTGCAATGTGCTGTTGGCATTGGACCAACAATCGCCTGAGATC
GCTGCGGGAGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGCCGGAGA
TCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGC
CCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTG
CGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGT
AACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCC
ACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACC
CTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAA
ATACATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTG
TAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATT
GTAGATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGTGCATTCTCTGG
CAGGGACTTCACCAAGGTTGACAGATCAGCTGCATATGCAGCACGCTGGG
TGGGCAAATCAC

BO09069.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2674-PD 1227 M(2)21AB-RD 1..946 17..962 4680 99.7 Plus
CG2674-PH 1227 M(2)21AB-RH 1..946 17..962 4680 99.7 Plus
CG2674-PF 1227 M(2)21AB-RF 1..946 17..962 4680 99.7 Plus
CG2674-PI 1227 M(2)21AB-RI 1..946 17..962 4680 99.7 Plus
CG2674-PA 1227 M(2)21AB-RA 1..946 17..962 4680 99.7 Plus
CG2674-PE 1227 M(2)21AB-RE 1..946 17..962 4680 99.7 Plus
CG2674-PC 1227 M(2)21AB-RC 436..946 452..962 2505 99.6 Plus
CG2674-PJ 1227 M(2)21AB-RJ 436..946 452..962 2505 99.6 Plus
CG2674-PG 1146 M(2)21AB-RG 355..865 452..962 2505 99.6 Plus
CG2674-PC 1227 M(2)21AB-RC 1..334 17..350 1670 100 Plus
CG2674-PJ 1227 M(2)21AB-RJ 1..334 17..350 1670 100 Plus
CG2674-PB 603 M(2)21AB-RB 1..334 17..350 1670 100 Plus
CG2674-PG 1146 M(2)21AB-RG 43..253 140..350 1055 100 Plus
CG2674-PB 603 M(2)21AB-RB 438..603 341..506 830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 2387 CG2674-RE 269..1216 15..962 4710 99.8 Plus
Sam-S-RA 2293 CG2674-RA 175..1122 15..962 4710 99.8 Plus
Sam-S-RI 2429 CG2674-RI 311..1258 15..962 4710 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 112687..113197 452..962 2525 99.6 Plus
2L 23513712 2L 110754..110879 218..343 630 100 Plus
2L 23513712 2L 108684..108809 15..140 630 100 Plus
2L 23513712 2L 111906..112020 341..455 575 100 Plus
2L 23513712 2L 110404..110483 139..218 400 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:51:42 has no hits.

BO09069.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:01 Download gff for BO09069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PI 1..946 17..962 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:04 Download gff for BO09069.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2674-PF 1..946 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:18:38 Download gff for BO09069.5prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 306..1258 9..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:16 Download gff for BO09069.5prime
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 306..1258 9..962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:16 Download gff for BO09069.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 108679..108809 9..140 98 -> Plus
2L 110406..110483 141..218 100 -> Plus
2L 110755..110877 219..341 100 -> Plus
2L 111907..112019 342..454 100 -> Plus
2L 112690..113197 455..962 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:18:38 Download gff for BO09069.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 108679..108809 9..140 98 -> Plus
arm_2L 110406..110483 141..218 100 -> Plus
arm_2L 110755..110877 219..341 100 -> Plus
arm_2L 111907..112019 342..454 100 -> Plus
arm_2L 112690..113197 455..962 99   Plus

BO09069.complete Sequence

1258 bp assembled on 2006-12-18

GenBank Submission: FJ631379

> BO09069.complete
GAAGTTATCAGTCGACATGCCGCAAAAGACAAACGGACATAGCGCCAACG
GATGCAACGGCAGCAATGGCAACTCATATGACATGGAAGACGGAGCTACA
TTCCTGTTCACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAAAATGTG
CGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGGATCCAA
ACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATTCTGCTG
TGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGTTGTTCG
TGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTTTCGATT
TCAAAACGTGCAATGTGCTGTTGGCATTGGACCAACAATCGCCTGAGATC
GCTGCGGGAGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGCCGGAGA
TCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAATGTATGC
CCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCTGAGCTG
CGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAACACAAGT
AACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGCGTGTCC
ACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTAGAAACC
CTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCCCGCCAA
ATACATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGCTTTTTG
TAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAAATCATT
GTAGATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGTGCATTCTCTGG
CAAGGACTTCACCAAGGTTGACAGATCAGCTGCATATGCAGCACGCTGGG
TGGCCAAATCACTGGTTAAGGCCGGTCTCTGCAAGCGCTGCCTTGTCCAA
GTGTCCTACGCCATAGGTCTTGCTGAGCCTCTCTCCATAACTGTGTTCGA
CTACGGAACTTCTCACAAGTCACAAAAAGAACTTCTGGATATCATCCGTC
GAAACTTTGACCTCAGGCCCGGCAAGATTGTCAAGGACCTAAACCTGCGC
CAGCCGATATACCAGCGAACAAGCACTTATGGACACTTCGGTCGCGCGGG
CTTCTCGTGGGAGGAGGCCAAGCCTCTGGAGATTGACAACGCAAGCTTTC
TAGACCAT

BO09069.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 1227 CG2674-PE 1..1224 17..1240 6120 100 Plus
Sam-S-RA 1227 CG2674-PA 1..1224 17..1240 6120 100 Plus
Sam-S-RI 1227 CG2674-PI 1..1224 17..1240 6120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-RE 2387 CG2674-RE 269..1494 15..1240 6130 100 Plus
Sam-S-RA 2293 CG2674-RA 175..1400 15..1240 6130 100 Plus
Sam-S-RI 2429 CG2674-RI 311..1536 15..1240 6130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 112687..113370 452..1135 3420 100 Plus
2L 23513712 2L 108684..108809 15..140 630 100 Plus
2L 23513712 2L 110754..110879 218..343 630 100 Plus
2L 23513712 2L 111906..112020 341..455 575 100 Plus
2L 23513712 2L 113434..113539 1135..1240 530 100 Plus
2L 23513712 2L 110404..110483 139..218 400 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:14 has no hits.

BO09069.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:03 Download gff for BO09069.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RF 1..1227 17..1243 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:34 Download gff for BO09069.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RH 400..1623 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:15 Download gff for BO09069.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 313..1536 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:03 Download gff for BO09069.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RH 393..1623 9..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:56 Download gff for BO09069.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 313..1536 17..1242 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:56 Download gff for BO09069.complete
Subject Subject Range Query Range Percent Splice Strand
2L 108686..108809 17..140 100 -> Plus
2L 110406..110483 141..218 100 -> Plus
2L 110755..110877 219..341 100 -> Plus
2L 111907..112019 342..454 100 -> Plus
2L 113434..113539 1135..1242 98   Plus
2L 112690..113369 455..1134 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:15 Download gff for BO09069.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 110755..110877 219..341 100 -> Plus
arm_2L 111907..112019 342..454 100 -> Plus
arm_2L 110406..110483 141..218 100 -> Plus
arm_2L 108686..108809 17..140 100 -> Plus
arm_2L 112690..113369 455..1134 100 -> Plus
arm_2L 113434..113539 1135..1242 98   Plus

BO09069.pep Sequence

Translation from 16 to 1258

> BO09069.pep
MPQKTNGHSANGCNGSNGNSYDMEDGATFLFTSESVGEGHPDKMCDQISD
AILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQH
IGYDDSSKGFDFKTCNVLLALDQQSPEIAAGVHVNRAEEEIGAGDQGIMF
GYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYL
FNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDAN
TIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTK
VDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSH
KSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEE
AKPLEIDNASFLDH

BO09069.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-PE 408 CG2674-PE 1..408 1..408 2144 100 Plus
Sam-S-PA 408 CG2674-PA 1..408 1..408 2144 100 Plus
Sam-S-PI 408 CG2674-PI 1..408 1..408 2144 100 Plus
Sam-S-PF 408 CG2674-PF 1..408 1..408 2144 100 Plus
Sam-S-PH 408 CG2674-PH 1..408 1..408 2144 100 Plus