Clone Sequence Records
BO09073.3prime Sequence
851 bp (799 high quality bases) assembled on 2006-01-10
> BO09073.3prime
ATGGTCTAGAAAGCTTGCAACTTCGATGAGGAATTTGCGACTCGGTGAGC
GGGCAACCTTGGCTCCAAATTGCTTTATTCTCTGCCGGACGTCGGCCAAC
GTCAGCTTGTTCCTCTTGCTGTAGACATTGAGATATATGCCCAGGACAAC
GATGAGGCCCGACCACAGATATTGTAAGGTAAAGGGCTTGCTGAAAAGCA
CAAAGGAGAAGGCTATAGTCACAGCCTTGCGGGCGGTGGTCACTGTGGCA
GCTATGGGGGCACCACTACTCCTCACCAGAGCCAGCACAAACTGAATGCC
CAGATAGCCGGACAAACTAAAGAGGAAGCCATAGCCGAAGGTCTCAACGG
GATGCTCCAAACAGAATGCAAAGCCGCTGAAGAAGTTGCCGGTAACCAGC
ATAATCACAAATAGGTACACAAAACCCAAGCCGTATGAGTAGAACACCAC
CTCACTGCTGGGCGCCTTGAATTCCCGCATCGCCTTCTCCTGGACATTGC
CAATGGCTGCGTCGCAGAGCAGCGCTCCCGAAATCATGGCCACACCAAGC
AGATTGAAATTGGGCGTCATCTGGGAGTCGGCCAGCGTGAACCAGGCCAA
TCCGATGCACATGCAGGTGGCTGCCGCAAAGTCCAGCAGTCCGTAGCGTT
TGCCCTGTATGAGGATGCTGCCCACCAGCACGGGAATGAGCTTGCAGCAC
TTGAAAATCACCTGGGTGGGATAGTTCAGGTAGCCGAGACTTGAGTTGGA
CAGACCCATGGTACCCAGCGTGAGAGCAGCCAGAATTAGGTATGTTCTCA
TGGGAATGCAACGTGGCTCCGGCTCAATGTTCCAAAAGGAACCGCCGCTT
A
BO09073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7853-PA | 1191 | CG7853-RA | 356..1188 | 851..19 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Papst2-RA | 1551 | CG7853-RA | 625..1457 | 851..19 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17043421..17043917 | 851..355 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 17043972..17044155 | 356..173 | 920 | 100 | Minus |
3L | 28110227 | 3L | 17044218..17044371 | 172..19 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:56 has no hits.
BO09073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:08 Download gff for
BO09073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7853-PA | 357..1191 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:13 Download gff for
BO09073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7853-PA | 357..1191 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:48:20 Download gff for
BO09073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 626..1457 | 19..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:36 Download gff for
BO09073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 626..1457 | 19..850 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:36 Download gff for
BO09073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17043422..17043917 | 355..850 | 100 | -> | Minus |
3L | 17043974..17044155 | 173..354 | 100 | -> | Minus |
3L | 17044218..17044371 | 19..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:48:20 Download gff for
BO09073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17036522..17037017 | 355..850 | 100 | -> | Minus |
arm_3L | 17037074..17037255 | 173..354 | 100 | -> | Minus |
arm_3L | 17037318..17037471 | 19..172 | 100 | | Minus |
BO09073.5prime Sequence
907 bp (770 high quality bases) assembled on 2006-01-10
> BO09073.5prime
GAAGTTATCAGTCGACATGTATATAGACACATCCGCTAGCAGCAGAATGA
CCGATAATAAGGGGAGCGTTATCACCATTAATGGCGGCGAATCGGCGGGA
AACTCGCCGCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCTCCGCCGGA
ACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGT
TCCTGCTCAGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGTACGGCTAT
CTGCAGGAGCTGATCTTCACCGTCGAAGGATTCAAACCCTACGGATGGTT
CCTCACGCTCGTCCAGTTTGGCTACTACATCGGCTTCGGTTTGGTGGAGC
GGCGGCTGGAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGAACATTGAG
CCGGAGCCACGTTGCATTCCCATGAGAACATACCTAATTCTGGCTGCTCT
CACGCTGGGTACCATGGGTCTGTCCAACTCAAGTCTCGGCTACCTGAACT
ATCCCACCCAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCGTGCTGGTG
GGCAGCATCCTCATACAGGGCAAACGCTACGGACTGCTGGACTTTGCGGC
AGCCACCTGCATGTGCATCGGATTGGCCTGGTTCACGCTGGCCGACTCCC
AGATGACGCCCAATTTCAATCTGCTTGGTGTGGCCATGATTTCGGGAGCG
CTGCTCTGCGACGCAGCCATTGGCAATGTCCAGGAGAAGGCGATGCGGGA
ATTCAAGGCGCCCAGCAGTGAGGTGGTGTTCTACTCATACGGCTTGGGTT
TTGTGTACCTATTTGTGATTATGCTGGTTACCGGCAACTTCTTCAGCGGC
TTTGCATTCTGTTTGGAGCATCCCGTTGAGACCTTCGGCTATGGCTCCCT
CTTTTAG
BO09073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7853-PA | 1191 | CG7853-RA | 1..888 | 17..904 | 4415 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Papst2-RA | 1551 | CG7853-RA | 270..1157 | 17..904 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17043066..17043917 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:44:53 has no hits.
BO09073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:09 Download gff for
BO09073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7853-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:15 Download gff for
BO09073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7853-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:04 Download gff for
BO09073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 264..1159 | 11..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:45 Download gff for
BO09073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 264..1159 | 11..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:45 Download gff for
BO09073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17043060..17043917 | 11..868 | 99 | -> | Plus |
3L | 17043974..17044011 | 869..907 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:04 Download gff for
BO09073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17036160..17037017 | 11..868 | 99 | -> | Plus |
arm_3L | 17037074..17037111 | 869..907 | 94 | | Plus |
BO09073.complete Sequence
1222 bp (1222 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631380
> BO09073.complete
GAAGTTATCAGTCGACATGTATATAGACACATCCGCTAGCAGCAGAATGA
CCGATAATAAGGGGAGCGTTATCACCATTAATGGCGGCGAATCGGCGGGA
AACTCGCCGCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCTCCGCCGGA
ACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGT
TCCTGCTCAGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGTACGGCTAT
CTGCAGGAGCTGATCTTCACCGTCGAAGGATTCAAACCCTACGGATGGTT
CCTCACGCTCGTCCAGTTTGGCTACTACATCGGCTTCGGTTTGGTGGAGC
GGCGGCTGGAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGAACATTGAG
CCGGAGCCACGTTGCATTCCCATGAGAACATACCTAATTCTGGCTGCTCT
CACGCTGGGTACCATGGGTCTGTCCAACTCAAGTCTCGGCTACCTGAACT
ATCCCACCCAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCGTGCTGGTG
GGCAGCATCCTCATACAGGGCAAACGCTACGGACTGCTGGACTTTGCGGC
AGCCACCTGCATGTGCATCGGATTGGCCTGGTTCACGCTGGCCGACTCCC
AGATGACGCCCAATTTCAATCTGCTTGGTGTGGCCATGATTTCGGGAGCG
CTGCTCTGCGACGCAGCCATTGGCAATGTCCAGGAGAAGGCGATGCGGGA
ATTCAAGGCGCCCAGCAGTGAGGTGGTGTTCTACTCATACGGCTTGGGTT
TTGTGTACCTATTTGTGATTATGCTGGTTACCGGCAACTTCTTCAGCGGC
TTTGCATTCTGTTTGGAGCATCCCGTTGAGACCTTCGGCTATGGCTTCCT
CTTTAGTTTGTCCGGCTATCTGGGCATTCAGTTTGTGCTGGCTCTGGTGA
GGAGTAGTGGTGCCCCCATAGCTGCCACAGTGACCACCGCCCGCAAGGCT
GTGACTATAGCCTTCTCCTTTGTGCTTTTCAGCAAGCCCTTTACCTTACA
ATATCTGTGGTCGGGCCTCATCGTTGTCCTGGGCATATATCTCAATGTCT
ACAGCAAGAGGAACAAGCTGACGTTGGCCGACGTCCGGCAGAGAATAAAG
CAATTTGGAGCCAAGGTTGCCCGCTCACCGAGTCGCAAATTCCTCATCGA
AGTTGCAAGCTTTCTAGACCAT
BO09073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Papst2-RA | 1191 | CG7853-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Papst2-RA | 1551 | CG7853-RA | 270..1457 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17043066..17043917 | 17..868 | 4260 | 100 | Plus |
3L | 28110227 | 3L | 17043972..17044155 | 867..1050 | 920 | 100 | Plus |
3L | 28110227 | 3L | 17044218..17044371 | 1051..1204 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:17:03 has no hits.
BO09073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:26 Download gff for
BO09073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 1..1191 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:13 Download gff for
BO09073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 259..1452 | 11..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:19:18 Download gff for
BO09073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 270..1457 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:26 Download gff for
BO09073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 259..1452 | 11..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:49 Download gff for
BO09073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Papst2-RA | 270..1457 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:49 Download gff for
BO09073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17043066..17043917 | 17..868 | 100 | -> | Plus |
3L | 17043974..17044155 | 869..1050 | 100 | -> | Plus |
3L | 17044218..17044371 | 1051..1206 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:19:18 Download gff for
BO09073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17036166..17037017 | 17..868 | 100 | -> | Plus |
arm_3L | 17037074..17037255 | 869..1050 | 100 | -> | Plus |
arm_3L | 17037318..17037471 | 1051..1206 | 98 | | Plus |
BO09073.pep Sequence
Translation from 16 to 1222
> BO09073.pep
MYIDTSASSRMTDNKGSVITINGGESAGNSPPSQRKSSTSESPPELRILC
FDLTYYNRTTQFLLSCAGVFFLYILYGYLQELIFTVEGFKPYGWFLTLVQ
FGYYIGFGLVERRLEGYRISGGSFWNIEPEPRCIPMRTYLILAALTLGTM
GLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQGKRYGLLDFAAATCMC
IGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMREFKAPS
SEVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLFSLSG
YLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSG
LIVVLGIYLNVYSKRNKLTLADVRQRIKQFGAKVARSPSRKFLIEVASFL
DH
BO09073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Papst2-PA | 396 | CG7853-PA | 1..396 | 1..396 | 2044 | 100 | Plus |
sll-PB | 465 | CG7623-PB | 107..464 | 19..385 | 212 | 21.7 | Plus |
sll-PA | 465 | CG7623-PA | 107..464 | 19..385 | 212 | 21.7 | Plus |
meigo-PB | 338 | CG5802-PB | 7..321 | 60..371 | 210 | 25.6 | Plus |
meigo-PA | 338 | CG5802-PA | 7..321 | 60..371 | 210 | 25.6 | Plus |