Clone BO09073 Report

Search the DGRC for BO09073

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptPapst2-RA
Protein status:BO09073.pep: validated full length
Sequenced Size:1222

Clone Sequence Records

BO09073.3prime Sequence

851 bp (799 high quality bases) assembled on 2006-01-10

> BO09073.3prime
ATGGTCTAGAAAGCTTGCAACTTCGATGAGGAATTTGCGACTCGGTGAGC
GGGCAACCTTGGCTCCAAATTGCTTTATTCTCTGCCGGACGTCGGCCAAC
GTCAGCTTGTTCCTCTTGCTGTAGACATTGAGATATATGCCCAGGACAAC
GATGAGGCCCGACCACAGATATTGTAAGGTAAAGGGCTTGCTGAAAAGCA
CAAAGGAGAAGGCTATAGTCACAGCCTTGCGGGCGGTGGTCACTGTGGCA
GCTATGGGGGCACCACTACTCCTCACCAGAGCCAGCACAAACTGAATGCC
CAGATAGCCGGACAAACTAAAGAGGAAGCCATAGCCGAAGGTCTCAACGG
GATGCTCCAAACAGAATGCAAAGCCGCTGAAGAAGTTGCCGGTAACCAGC
ATAATCACAAATAGGTACACAAAACCCAAGCCGTATGAGTAGAACACCAC
CTCACTGCTGGGCGCCTTGAATTCCCGCATCGCCTTCTCCTGGACATTGC
CAATGGCTGCGTCGCAGAGCAGCGCTCCCGAAATCATGGCCACACCAAGC
AGATTGAAATTGGGCGTCATCTGGGAGTCGGCCAGCGTGAACCAGGCCAA
TCCGATGCACATGCAGGTGGCTGCCGCAAAGTCCAGCAGTCCGTAGCGTT
TGCCCTGTATGAGGATGCTGCCCACCAGCACGGGAATGAGCTTGCAGCAC
TTGAAAATCACCTGGGTGGGATAGTTCAGGTAGCCGAGACTTGAGTTGGA
CAGACCCATGGTACCCAGCGTGAGAGCAGCCAGAATTAGGTATGTTCTCA
TGGGAATGCAACGTGGCTCCGGCTCAATGTTCCAAAAGGAACCGCCGCTT
A

BO09073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7853-PA 1191 CG7853-RA 356..1188 851..19 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1551 CG7853-RA 625..1457 851..19 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17043421..17043917 851..355 2485 100 Minus
3L 28110227 3L 17043972..17044155 356..173 920 100 Minus
3L 28110227 3L 17044218..17044371 172..19 770 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:02:56 has no hits.

BO09073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:08 Download gff for BO09073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 357..1191 18..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:13 Download gff for BO09073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 357..1191 18..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:48:20 Download gff for BO09073.3prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 626..1457 19..850 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:36 Download gff for BO09073.3prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 626..1457 19..850 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:36 Download gff for BO09073.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17043422..17043917 355..850 100 -> Minus
3L 17043974..17044155 173..354 100 -> Minus
3L 17044218..17044371 19..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:48:20 Download gff for BO09073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17036522..17037017 355..850 100 -> Minus
arm_3L 17037074..17037255 173..354 100 -> Minus
arm_3L 17037318..17037471 19..172 100   Minus

BO09073.5prime Sequence

907 bp (770 high quality bases) assembled on 2006-01-10

> BO09073.5prime
GAAGTTATCAGTCGACATGTATATAGACACATCCGCTAGCAGCAGAATGA
CCGATAATAAGGGGAGCGTTATCACCATTAATGGCGGCGAATCGGCGGGA
AACTCGCCGCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCTCCGCCGGA
ACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGT
TCCTGCTCAGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGTACGGCTAT
CTGCAGGAGCTGATCTTCACCGTCGAAGGATTCAAACCCTACGGATGGTT
CCTCACGCTCGTCCAGTTTGGCTACTACATCGGCTTCGGTTTGGTGGAGC
GGCGGCTGGAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGAACATTGAG
CCGGAGCCACGTTGCATTCCCATGAGAACATACCTAATTCTGGCTGCTCT
CACGCTGGGTACCATGGGTCTGTCCAACTCAAGTCTCGGCTACCTGAACT
ATCCCACCCAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCGTGCTGGTG
GGCAGCATCCTCATACAGGGCAAACGCTACGGACTGCTGGACTTTGCGGC
AGCCACCTGCATGTGCATCGGATTGGCCTGGTTCACGCTGGCCGACTCCC
AGATGACGCCCAATTTCAATCTGCTTGGTGTGGCCATGATTTCGGGAGCG
CTGCTCTGCGACGCAGCCATTGGCAATGTCCAGGAGAAGGCGATGCGGGA
ATTCAAGGCGCCCAGCAGTGAGGTGGTGTTCTACTCATACGGCTTGGGTT
TTGTGTACCTATTTGTGATTATGCTGGTTACCGGCAACTTCTTCAGCGGC
TTTGCATTCTGTTTGGAGCATCCCGTTGAGACCTTCGGCTATGGCTCCCT
CTTTTAG

BO09073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7853-PA 1191 CG7853-RA 1..888 17..904 4415 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1551 CG7853-RA 270..1157 17..904 4425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17043066..17043917 17..868 4260 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:44:53 has no hits.

BO09073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:09 Download gff for BO09073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 1..890 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:15 Download gff for BO09073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 1..890 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:04 Download gff for BO09073.5prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 264..1159 11..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:45 Download gff for BO09073.5prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 264..1159 11..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:45 Download gff for BO09073.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17043060..17043917 11..868 99 -> Plus
3L 17043974..17044011 869..907 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:04 Download gff for BO09073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17036160..17037017 11..868 99 -> Plus
arm_3L 17037074..17037111 869..907 94   Plus

BO09073.complete Sequence

1222 bp (1222 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631380

> BO09073.complete
GAAGTTATCAGTCGACATGTATATAGACACATCCGCTAGCAGCAGAATGA
CCGATAATAAGGGGAGCGTTATCACCATTAATGGCGGCGAATCGGCGGGA
AACTCGCCGCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCTCCGCCGGA
ACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGT
TCCTGCTCAGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGTACGGCTAT
CTGCAGGAGCTGATCTTCACCGTCGAAGGATTCAAACCCTACGGATGGTT
CCTCACGCTCGTCCAGTTTGGCTACTACATCGGCTTCGGTTTGGTGGAGC
GGCGGCTGGAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGAACATTGAG
CCGGAGCCACGTTGCATTCCCATGAGAACATACCTAATTCTGGCTGCTCT
CACGCTGGGTACCATGGGTCTGTCCAACTCAAGTCTCGGCTACCTGAACT
ATCCCACCCAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCGTGCTGGTG
GGCAGCATCCTCATACAGGGCAAACGCTACGGACTGCTGGACTTTGCGGC
AGCCACCTGCATGTGCATCGGATTGGCCTGGTTCACGCTGGCCGACTCCC
AGATGACGCCCAATTTCAATCTGCTTGGTGTGGCCATGATTTCGGGAGCG
CTGCTCTGCGACGCAGCCATTGGCAATGTCCAGGAGAAGGCGATGCGGGA
ATTCAAGGCGCCCAGCAGTGAGGTGGTGTTCTACTCATACGGCTTGGGTT
TTGTGTACCTATTTGTGATTATGCTGGTTACCGGCAACTTCTTCAGCGGC
TTTGCATTCTGTTTGGAGCATCCCGTTGAGACCTTCGGCTATGGCTTCCT
CTTTAGTTTGTCCGGCTATCTGGGCATTCAGTTTGTGCTGGCTCTGGTGA
GGAGTAGTGGTGCCCCCATAGCTGCCACAGTGACCACCGCCCGCAAGGCT
GTGACTATAGCCTTCTCCTTTGTGCTTTTCAGCAAGCCCTTTACCTTACA
ATATCTGTGGTCGGGCCTCATCGTTGTCCTGGGCATATATCTCAATGTCT
ACAGCAAGAGGAACAAGCTGACGTTGGCCGACGTCCGGCAGAGAATAAAG
CAATTTGGAGCCAAGGTTGCCCGCTCACCGAGTCGCAAATTCCTCATCGA
AGTTGCAAGCTTTCTAGACCAT

BO09073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1191 CG7853-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1551 CG7853-RA 270..1457 17..1204 5940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17043066..17043917 17..868 4260 100 Plus
3L 28110227 3L 17043972..17044155 867..1050 920 100 Plus
3L 28110227 3L 17044218..17044371 1051..1204 770 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:17:03 has no hits.

BO09073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:26 Download gff for BO09073.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 1..1191 17..1205 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:13 Download gff for BO09073.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 259..1452 11..1204 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:19:18 Download gff for BO09073.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 270..1457 17..1206 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:26 Download gff for BO09073.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 259..1452 11..1204 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:49 Download gff for BO09073.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 270..1457 17..1206 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:49 Download gff for BO09073.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17043066..17043917 17..868 100 -> Plus
3L 17043974..17044155 869..1050 100 -> Plus
3L 17044218..17044371 1051..1206 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:19:18 Download gff for BO09073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17036166..17037017 17..868 100 -> Plus
arm_3L 17037074..17037255 869..1050 100 -> Plus
arm_3L 17037318..17037471 1051..1206 98   Plus

BO09073.pep Sequence

Translation from 16 to 1222

> BO09073.pep
MYIDTSASSRMTDNKGSVITINGGESAGNSPPSQRKSSTSESPPELRILC
FDLTYYNRTTQFLLSCAGVFFLYILYGYLQELIFTVEGFKPYGWFLTLVQ
FGYYIGFGLVERRLEGYRISGGSFWNIEPEPRCIPMRTYLILAALTLGTM
GLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQGKRYGLLDFAAATCMC
IGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMREFKAPS
SEVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLFSLSG
YLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSG
LIVVLGIYLNVYSKRNKLTLADVRQRIKQFGAKVARSPSRKFLIEVASFL
DH

BO09073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-PA 396 CG7853-PA 1..396 1..396 2044 100 Plus
sll-PB 465 CG7623-PB 107..464 19..385 212 21.7 Plus
sll-PA 465 CG7623-PA 107..464 19..385 212 21.7 Plus
meigo-PB 338 CG5802-PB 7..321 60..371 210 25.6 Plus
meigo-PA 338 CG5802-PA 7..321 60..371 210 25.6 Plus