Clone Sequence Records
BO09074.3prime Sequence
926 bp (758 high quality bases) assembled on 2006-01-10
> BO09074.3prime
ATGGTCTAGAAAGCTTGCCATGTGTATCGTGGCCGCCGTGTAGCGGGCCT
CGCCACGCCTCCATGACCACTGGCTGGGACGGAACTGGATGAGCAGCTGG
CCGCTCTTGGTGTGCGGATTGCGGTACGCGTAGAAGAGCCACAGCGTCAC
GGCGAACACCAGACAGATGGGCACCATGAAGCCAAAGGCTACGCCCACAT
TCTTGTTGTCCGCTTCCGCCTTCGATAGCTCGGCATTGCCGACCTTTCCG
TCCGCATGGATATCACTGGAGTGATCCACTCCCGGCTTAATGTAAGCGGT
GGCATGTGGTGCCCTCGTACTCATCACGCTGGGCTCCGTGACCGGCGTGG
ATGAGCCGCTGGATGATGTTGAGGTATTTGTCGCACCATTGGCACTGGCA
CCGCTGTTCGCAGAACCATTCTTACCCTGGCCGGCAGCATTGTTACCCTT
ATCGCCGAGGGCCGGGCACAAACTACTGGTATGAATGGCGGTAGCCTCAC
ATCCCATTTGGAGCCACTCGTGCTTTTTGCGGTCGGTACCCGTGGAGCAG
CGATTCAGCACCGAGCACCATAGGCACGTAAACGTAGTGTTGTGGTTGAT
GCACGAATTGCAGTCATTGTAGCCAAGGCAGGTGGGCTGTGCCGCCAGCT
TGATGATGGTGTTGTTGGTGATCTCGTGCTGCTGGAACGTGACACGGTGG
TACTCATAGATTGTCTTTCGGCGGGCAAAGAATAGTTGCTTGTCGATAAT
GTAGGCGTCGGAAAGGCCGACCTTGACCGGATGCTCCTTGTCCTGGATGG
AGTTGATGTTCGTGGGCACCAGCATGTATGCGAAAACAATGTCGCCACTC
TGGTACAGGGTCACGCTGAACGTAAACTTGCCAAAATCCGGCTTGTCCTG
CAGCGTCACATCTCCCACACGCGGTG
BO09074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2221-PA | 1878 | l(1)G0289-RA | 983..1875 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-RC | 3493 | CG2221-RC | 1028..1937 | 926..19 | 4500 | 99.8 | Minus |
| l(1)G0289-RB | 2328 | CG2221-RB | 1028..1937 | 926..19 | 4500 | 99.8 | Minus |
| l(1)G0289-RA | 2856 | CG2221-RA | 1028..1937 | 926..19 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10358086..10358505 | 85..504 | 2100 | 100 | Plus |
| X | 23542271 | X | 10358918..10359111 | 729..921 | 920 | 99.5 | Plus |
| X | 23542271 | X | 10358700..10358851 | 577..728 | 760 | 100 | Plus |
| X | 23542271 | X | 10358562..10358636 | 503..577 | 375 | 100 | Plus |
| X | 23542271 | X | 10357748..10357816 | 19..87 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:20:41 has no hits.
BO09074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:10 Download gff for
BO09074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2221-PA | 966..1878 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:16 Download gff for
BO09074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2221-PA | 966..1878 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:50:41 Download gff for
BO09074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 1028..1937 | 19..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:37 Download gff for
BO09074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 1028..1937 | 19..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:37 Download gff for
BO09074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10357748..10357813 | 19..84 | 100 | <- | Plus |
| X | 10358086..10358504 | 85..503 | 100 | <- | Plus |
| X | 10358563..10358635 | 504..576 | 100 | <- | Plus |
| X | 10358700..10358851 | 577..728 | 100 | <- | Plus |
| X | 10358918..10359117 | 729..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:50:41 Download gff for
BO09074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10251781..10251846 | 19..84 | 100 | <- | Plus |
| arm_X | 10252119..10252537 | 85..503 | 100 | <- | Plus |
| arm_X | 10252596..10252668 | 504..576 | 100 | <- | Plus |
| arm_X | 10252733..10252884 | 577..728 | 100 | <- | Plus |
| arm_X | 10252951..10253150 | 729..926 | 99 | | Plus |
BO09074.5prime Sequence
925 bp (767 high quality bases) assembled on 2006-01-10
> BO09074.5prime
GAAGTTATCAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAA
TTGCGATCCTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCC
GTGTTGCATCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATAT
TGCCGCATACGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAA
GACGAACCGTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGA
GGCGCAGTGTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGC
TGGCGGAGGAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGG
CAGCGGGCGGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGC
ACTGGACAGCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATAC
CACTAGCCAAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGT
CGGGCAATCCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACG
GATCCCTCACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGT
GCCCGAGGAAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGA
GCGTTGACTTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGAC
GAGGTGGCCTCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCAT
GCTTTCGTCGTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATT
TCCCCTTCTACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGA
TTCCTTTACACCGGCGAGTATGTCCACTCCTGGCTGGCGGCCACCCAGTA
CATTGCCCCGCTGATGGGCAATTTC
BO09074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2221-PA | 1878 | l(1)G0289-RA | 1..909 | 17..925 | 4520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-RC | 3493 | CG2221-RC | 63..971 | 17..925 | 4530 | 99.9 | Plus |
| l(1)G0289-RB | 2328 | CG2221-RB | 63..971 | 17..925 | 4530 | 99.9 | Plus |
| l(1)G0289-RA | 2856 | CG2221-RA | 63..971 | 17..925 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10359343..10360163 | 925..105 | 4090 | 99.9 | Minus |
| X | 23542271 | X | 10366124..10366211 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:38:51 has no hits.
BO09074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:11 Download gff for
BO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2221-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:17 Download gff for
BO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2221-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:19:35 Download gff for
BO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 63..971 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:06 Download gff for
BO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 63..971 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:06 Download gff for
BO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10359343..10360163 | 105..925 | 99 | <- | Minus |
| X | 10366124..10366211 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:19:35 Download gff for
BO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10253376..10254196 | 105..925 | 99 | <- | Minus |
| arm_X | 10260157..10260244 | 17..104 | 100 | | Minus |
BO09074.complete Sequence
1909 bp (1909 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631381
> BO09074.complete
GAAGTTATCAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAA
TTGCGATCCTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCC
GTGTTGCATCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATAT
TGCCGCATACGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAA
GACGAACCGTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGA
GGCGCAGTGTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGC
TGGCGGAGGAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGG
CAGCGGGCGGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGC
ACTGGACAGCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATAC
CACTAGCCAAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGT
CGGGCAATCCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACG
GATCCCTCACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGT
GCCCGAGGAAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGA
GCGTTGACTTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGAC
GAGGTGGCCTCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCAT
GCTTTCGTCGTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATT
TCCCCTTCTACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGA
TTCCTTTACACCGGCGAGTATGTCCACTCCTGGCTGGCGGCCACCCAGTA
CATTGCCCCGCTGATGGCCAATTTCGACACGAGCATGTCCAACGACTCGT
TTGTCCGATTGCATGACAATGGAACCGCCTTCACCGCCGTGTGGGAGAAT
GTGACGCTGCAGGACAAGCCGGATTTTGGCAAGTTTACGTTCAGCGTGAC
CCTGTACCAGAGTGGCGACATTGTTTTCGCATACATGCTGGTGCCCACGA
ACATCAACTCCATCCAGGACAAGGAGCATCCGGTCAAGGTCGGCCTTTCC
GACGCCTACATTATCGACAAGCAACTATTCTTTGCCCGCCGAAAGACAAT
CTATGAGTACCACCGTGTCACGTTCCAGCAGCACGAGATCACCAACAACA
CCATCATCAAGCTGGCGGCACAGCCCACCTGCCTTGGCTACAATGACTGC
AATTCGTGCATCAACCACAACACTACGTTTACGTGCCTATGGTGCTCGGT
GCTGAATCGCTGCTCCACGGGTACCGACCGCAAAAAGCACGAGTGGCTCC
AAATGGGATGTGAGGCTACCGCCATTCATACCAGTAGTTTGTGCCCGGCC
CTCGGCGATAAGGGTAACAATGCTGCCGGCCAGGGTAAGAATGGTTCTGC
GAACAGCGGTGCCAGTGCCAATGGTGCGACAAATACCTCAACATCATCCA
GCGGCTCATCCACGCCGGTCACGGAGCCCAGCGTGATGAGTACGAGGGCA
CCACATGCCACCGCTTACATTAAGCCGGGAGTGGATCACTCCAGTGATAT
CCATGCGGACGGAAAGGTCGGCAATGCCGAGCTATCGAAGGCGGAAGCGG
ACAACAAGAATGTGGGCGTAGCCTTTGGCTTCATGGTGCCCATCTGTCTG
GTGTTCGCCGTGACGCTGTGGCTCTTCTACGCGTACCGCAATCCGCACAC
CAAGAGCGGCCAGCTGCTCATCCAGTTCCGTCCCAGCCAGTGGTCATGGA
GGCGTGGCGAGGCCCGCTACACGGCGGCCACGATACACATGGCAAGCTTT
CTAGACCAT
BO09074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-RC | 1878 | CG2221-PC | 1..1875 | 17..1891 | 9375 | 100 | Plus |
| l(1)G0289-RB | 1878 | CG2221-PB | 1..1875 | 17..1891 | 9375 | 100 | Plus |
| l(1)G0289-RA | 1878 | CG2221-PA | 1..1875 | 17..1891 | 9375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-RC | 3493 | CG2221-RC | 63..1937 | 17..1891 | 9375 | 100 | Plus |
| l(1)G0289-RB | 2328 | CG2221-RB | 63..1937 | 17..1891 | 9375 | 100 | Plus |
| l(1)G0289-RA | 2856 | CG2221-RA | 63..1937 | 17..1891 | 9375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10359296..10360163 | 972..105 | 4340 | 100 | Minus |
| X | 23542271 | X | 10358086..10358505 | 1825..1406 | 2100 | 100 | Minus |
| X | 23542271 | X | 10358918..10359128 | 1181..971 | 1055 | 100 | Minus |
| X | 23542271 | X | 10358700..10358851 | 1333..1182 | 760 | 100 | Minus |
| X | 23542271 | X | 10366124..10366211 | 104..17 | 440 | 100 | Minus |
| X | 23542271 | X | 10358562..10358636 | 1407..1333 | 375 | 100 | Minus |
| X | 23542271 | X | 10357748..10357816 | 1891..1823 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:46:27 has no hits.
BO09074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:41 Download gff for
BO09074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 1..1878 | 17..1892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:45 Download gff for
BO09074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 103..1977 | 17..1891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:39 Download gff for
BO09074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 63..1937 | 17..1893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:41 Download gff for
BO09074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 103..1977 | 17..1891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:32 Download gff for
BO09074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 63..1937 | 17..1893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:32 Download gff for
BO09074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10358700..10358851 | 1182..1333 | 100 | <- | Minus |
| X | 10357746..10357813 | 1826..1893 | 97 | <- | Minus |
| X | 10358086..10358504 | 1407..1825 | 100 | <- | Minus |
| X | 10358563..10358635 | 1334..1406 | 100 | <- | Minus |
| X | 10359297..10360163 | 105..971 | 100 | <- | Minus |
| X | 10366124..10366211 | 17..104 | 100 | | Minus |
| X | 10358918..10359127 | 972..1181 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:39 Download gff for
BO09074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10251779..10251846 | 1826..1893 | 97 | <- | Minus |
| arm_X | 10252119..10252537 | 1407..1825 | 100 | <- | Minus |
| arm_X | 10252596..10252668 | 1334..1406 | 100 | <- | Minus |
| arm_X | 10252733..10252884 | 1182..1333 | 100 | <- | Minus |
| arm_X | 10252951..10253160 | 972..1181 | 100 | <- | Minus |
| arm_X | 10253330..10254196 | 105..971 | 100 | <- | Minus |
| arm_X | 10260157..10260244 | 17..104 | 100 | | Minus |
BO09074.pep Sequence
Translation from 16 to 1909
> BO09074.pep
MAKSVGSACAQIAILLAITCSASELASAVLHQDTYEIVDTNLPNIAAYGV
VPLRTDRLHRQRRTVPVSPPLPAVTTYRGAVSANATAEAGGAAGAGGGVA
AETTVTTVDNKAAGGSVSYNVHNVGVNGTGQRKTYDVAPAVDSNTTSQMA
PATKKPTLLGQSGNPKKVASSVVAATMTDPSPAVIDVDVSKVVDVPEEEI
EAAVKNASLKESVDFHEYYNSVLYENKDEVASLWTELKATPENIMLSSSH
RRAMTVELKFDFPFYGHFVRNITVATGGFLYTGEYVHSWLAATQYIAPLM
ANFDTSMSNDSFVRLHDNGTAFTAVWENVTLQDKPDFGKFTFSVTLYQSG
DIVFAYMLVPTNINSIQDKEHPVKVGLSDAYIIDKQLFFARRKTIYEYHR
VTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCSVLNRCS
TGTDRKKHEWLQMGCEATAIHTSSLCPALGDKGNNAAGQGKNGSANSGAS
ANGATNTSTSSSGSSTPVTEPSVMSTRAPHATAYIKPGVDHSSDIHADGK
VGNAELSKAEADNKNVGVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQL
LIQFRPSQWSWRRGEARYTAATIHMASFLDH
BO09074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-PC | 625 | CG2221-PC | 1..625 | 1..625 | 3262 | 100 | Plus |
| l(1)G0289-PB | 625 | CG2221-PB | 1..625 | 1..625 | 3262 | 100 | Plus |
| l(1)G0289-PA | 625 | CG2221-PA | 1..625 | 1..625 | 3262 | 100 | Plus |
