Clone BO09076 Report

Search the DGRC for BO09076

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptRluA-2-RA
Protein status:BO09076.pep: validated full length
Sequenced Size:1675

Clone Sequence Records

BO09076.3prime Sequence

941 bp (845 high quality bases) assembled on 2006-01-10

> BO09076.3prime
ATGGTCTAGAAAGCTTGCTACTTTATCGTAATCAATATTCGAATTACACG
CCCATTCCGGCAATTCGGTTTCGTACTCCCAACCAACGCCCTTGTATTTC
CATGCATGCAAGTACATTATGAGATCCTTTGTGCCGGGGTCTCTGTAGTT
TATCTTGCATTCAGAACATTGCGGATCCGAAGTTGTCTTCTTGGAATCAA
AGGACCTGTCTGGTTCCTCATAGCACGTTTGGGTGGCAATCTGTGCAGTA
GCATCGTTACTTGGTTCAAGGTTTTTTGAAATCACAGGCTTTTCAGTTTC
ACTATTAATAGGAGCCTGAACTACTGAGGGAGCCTCTACTACTGAAGTAC
TTGCTGCTACGTCTTTTATTTCCCCTGATACGATTTGATCTCCTTCCAAG
CCCAACCAGTTTTCTGCATTATGAATGCTAATTAGGTTACTGATCAACTG
TTCCTCGGTTATTCCACCGATATCTCCTCCTCTTCCTTTCAATGGACCGA
AAACTTCATGGTTGTACAAAGGATCATTTGAAATGGGATAGCCCAAGAAT
TGTAAATGCACTCGTATTTGGTGCATTCGTCCTGTTAGTGGTTTGCACAA
AACAATACTATCACTGCCCACCTCGCCGATTCTTTTAAATGTGGTCTTAC
AGTCCTTGCCCTTCGGTGAAACCTTACAAACACCTATTTTGTAGCTCACG
ACGTCGATTTTCTCATTGCATTCAACTATGCCATCTGGAAAGCGTCCTTC
AACGCGGCAAACGTATTCCTTTTGCACTTGGCGAGTTCGGATTTGCAGCT
CCAATTCGCGGGCTTTTTCAGCAGTCCGTCCAAACAAAAGTAGGCCAGAT
GTGAGACGATCCAATCTGTGAATGGTTCGCANGGTCTTCAGATTGTGCTC
CTTGGCCAGGATGAAAACTACCCGTGTGTGTCTATATCTTT

BO09076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6187-PA 1644 RluA-2-RA 738..1641 922..19 4476 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RE 1988 CG6187-RE 1008..1929 940..19 4539 99.6 Minus
RluA-2-RD 1880 CG6187-RD 900..1821 940..19 4539 99.6 Minus
RluA-2-RA 2013 CG6187-RA 1033..1954 940..19 4539 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10482284..10482575 543..252 1460 100 Minus
2L 23513712 2L 10482043..10482234 733..542 960 100 Minus
2L 23513712 2L 10481777..10481983 940..734 949 97.1 Minus
2L 23513712 2L 10482625..10482787 252..90 815 100 Minus
2L 23513712 2L 10482843..10482916 92..19 370 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:20:14 has no hits.

BO09076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:14 Download gff for BO09076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 719..1644 15..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:21 Download gff for BO09076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 719..1644 15..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:50:36 Download gff for BO09076.3prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1032..1959 14..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:23 Download gff for BO09076.3prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1032..1959 14..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:23 Download gff for BO09076.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10481776..10481983 734..941 97 -> Minus
2L 10482043..10482233 543..733 100 -> Minus
2L 10482285..10482574 253..542 100 -> Minus
2L 10482625..10482786 91..252 100 -> Minus
2L 10482845..10482921 14..90 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:50:36 Download gff for BO09076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10481776..10481983 734..941 97 -> Minus
arm_2L 10482043..10482233 543..733 100 -> Minus
arm_2L 10482285..10482574 253..542 100 -> Minus
arm_2L 10482625..10482786 91..252 100 -> Minus
arm_2L 10482845..10482921 14..90 97   Minus

BO09076.5prime Sequence

884 bp (856 high quality bases) assembled on 2006-01-10

> BO09076.5prime
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGAAGCTGCAAT

BO09076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6187-PA 1644 RluA-2-RA 1..867 17..883 4310 99.8 Plus
CG31719-PA 2220 RluA-1-RA 1156..1245 689..778 150 86.6 Plus
CG31719-PB 2220 RluA-1-RB 1156..1245 689..778 150 86.6 Plus
CG31719-PC 2220 RluA-1-RC 1156..1245 689..778 150 86.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RC 2001 CG6187-RC 314..1180 17..883 4320 99.9 Plus
RluA-2-RD 1880 CG6187-RD 181..1047 17..883 4320 99.9 Plus
RluA-2-RA 2013 CG6187-RA 314..1180 17..883 4320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10481347..10481570 410..633 1120 100 Plus
2L 23513712 2L 10477386..10477592 17..223 1035 100 Plus
2L 23513712 2L 10481097..10481286 223..412 950 100 Plus
2L 23513712 2L 10481762..10481924 721..883 800 99.4 Plus
2L 23513712 2L 10481619..10481712 631..724 470 100 Plus
2L 23513712 2L 10464997..10465099 819..717 230 81.6 Minus
2L 23513712 2L 10465286..10465378 724..632 210 81.7 Minus
Blast to na_te.dros performed on 2015-02-11 17:36:19 has no hits.

BO09076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:15 Download gff for BO09076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 1..867 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:22 Download gff for BO09076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 1..867 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:53 Download gff for BO09076.5prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 307..1180 11..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:52 Download gff for BO09076.5prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 307..1180 11..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:52 Download gff for BO09076.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10481763..10481924 722..884 98   Plus
2L 10477379..10477592 11..223 98 -> Plus
2L 10481098..10481284 224..410 100 -> Plus
2L 10481348..10481570 411..633 100 -> Plus
2L 10481622..10481709 634..721 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:53 Download gff for BO09076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10477379..10477592 11..223 98 -> Plus
arm_2L 10481098..10481284 224..410 100 -> Plus
arm_2L 10481348..10481570 411..633 100 -> Plus
arm_2L 10481622..10481709 634..721 100 -> Plus
arm_2L 10481763..10481924 722..884 98   Plus

BO09076.complete Sequence

1675 bp (1675 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631382

> BO09076.complete
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCGCCAAGT
GCAAAAGGAATACGTTTGCCGCGTTGAAGGACGCTTTCCAGATGGCATAG
TTGAATGCAATGAGAAAATCGACGTCGTGAGCTACAAAATAGGTGTTTGT
AAGGTTTCACCGAAGGGCAAGGACTGTAAGACCACATTTAAAAGAATCGG
CGAGGTGGGCAGTGATAGTATTGTTTTGTGCAAACCACTAACAGGACGAA
TGCACCAAATACGAGTGCATTTACAATTCTTGGGCTATCCCATTTCAAAT
GATCCTTTGTACAACCATGAAGTTTTCGGTCCATTGAAAGGAAGAGGAGG
AGATATCGGTGGAATAACCGAGGAACAGTTGATCAGTAACCTAATTAGCA
TTCATAATGCAGAAAACTGGTTGGGCTTGGAAGGAGATCAAATCGTATCA
GGGGAAATAAAAGACGTAGCAGCAAGTACTTCAGTAGTAGAGGCTCCCTC
AGTAGTTCAGGCTCCTATTAATAGTGAAACTGAAAAGCCTGTGATTTCAA
AAAACCTTGAACCAAGTAACGATGCTACTGCACAGATTGCCACCCAAACG
TGCTATGAGGAACCAGACAGGTCCTTTGATTCCAAGAAGACAACTTCGGA
TCCGCAATGTTCTGAATGCAAGATAAACTACAGAGACCCCGGCACAAAGG
ATCTCATAATGTACTTGCATGCATGGAAATACAAGGGCGTTGGTTGGGAG
TACGAAACCGAATTGCCGGAATGGGCGTGTAATTCGAATATTGATTACGA
TAAAGTAGCAAGCTTTCTAGACCAT

BO09076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RD 1644 CG6187-PD 1..1641 17..1657 8205 100 Plus
RluA-2-RA 1644 CG6187-PA 1..1641 17..1657 8205 100 Plus
RluA-2-RC 1632 CG6187-PC 1..1629 17..1657 7990 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RD 1880 CG6187-RD 181..1821 17..1657 8205 100 Plus
RluA-2-RA 2013 CG6187-RA 314..1954 17..1657 8205 100 Plus
RluA-2-RC 2001 CG6187-RC 314..1942 17..1657 7990 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10482284..10482575 1133..1424 1460 100 Plus
2L 23513712 2L 10481347..10481570 410..633 1120 100 Plus
2L 23513712 2L 10481762..10481983 721..942 1110 100 Plus
2L 23513712 2L 10477386..10477592 17..223 1035 100 Plus
2L 23513712 2L 10482043..10482234 943..1134 960 100 Plus
2L 23513712 2L 10481097..10481286 223..412 950 100 Plus
2L 23513712 2L 10482625..10482787 1424..1586 815 100 Plus
2L 23513712 2L 10481619..10481712 631..724 470 100 Plus
2L 23513712 2L 10482843..10482916 1584..1657 370 100 Plus
2L 23513712 2L 10464997..10465099 819..717 230 81.6 Minus
2L 23513712 2L 10465286..10465378 724..632 210 81.7 Minus
Blast to na_te.dros performed on 2014-11-27 07:42:45 has no hits.

BO09076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:28 Download gff for BO09076.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1..1644 17..1661 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:15 Download gff for BO09076.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 266..1918 11..1662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:18 Download gff for BO09076.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 314..1954 17..1659 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:28 Download gff for BO09076.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 266..1918 11..1662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:14 Download gff for BO09076.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 314..1954 17..1659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:14 Download gff for BO09076.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10481348..10481570 411..633 100 -> Plus
2L 10481622..10481709 634..721 100 -> Plus
2L 10481763..10481983 722..942 100 -> Plus
2L 10482043..10482233 943..1133 100 -> Plus
2L 10477386..10477592 17..223 100 -> Plus
2L 10481098..10481284 224..410 100 -> Plus
2L 10482285..10482574 1134..1423 100 -> Plus
2L 10482625..10482786 1424..1585 100 -> Plus
2L 10482845..10482916 1586..1659 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:18 Download gff for BO09076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10482625..10482786 1424..1585 100 -> Plus
arm_2L 10482845..10482916 1586..1659 97   Plus
arm_2L 10477386..10477592 17..223 100 -> Plus
arm_2L 10481098..10481284 224..410 100 -> Plus
arm_2L 10481348..10481570 411..633 100 -> Plus
arm_2L 10481622..10481709 634..721 100 -> Plus
arm_2L 10481763..10481983 722..942 100 -> Plus
arm_2L 10482043..10482233 943..1133 100 -> Plus
arm_2L 10482285..10482574 1134..1423 100 -> Plus

BO09076.pep Sequence

Translation from 16 to 1675

> BO09076.pep
MESSKLLRNAQTQHGDASSVDVENIFLHRHMLYTNPTSDGNLHDREDSPE
CVWCPDDKDGSPAESKDPPISISEEKSETQSKEVLSEKRKASSTDDEGHV
KKVKLEANSLKTKRPGFSDERYDETSYYFENGLRKVYPYFFTFTTFAKGR
WVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSEKVPKDYKIKHNDLL
ANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFI
LAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYV
CRVEGRFPDGIVECNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGEVGSD
SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGDIGGI
TEEQLISNLISIHNAENWLGLEGDQIVSGEIKDVAASTSVVEAPSVVQAP
INSETEKPVISKNLEPSNDATAQIATQTCYEEPDRSFDSKKTTSDPQCSE
CKINYRDPGTKDLIMYLHAWKYKGVGWEYETELPEWACNSNIDYDKVASF
LDH

BO09076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-PD 547 CG6187-PD 1..547 1..547 2898 100 Plus
RluA-2-PA 547 CG6187-PA 1..547 1..547 2898 100 Plus
RluA-2-PC 543 CG6187-PC 1..543 1..547 2865 99.3 Plus
RluA-1-PC 739 CG31719-PC 248..738 87..549 1628 65.4 Plus
RluA-1-PB 739 CG31719-PB 248..738 87..549 1628 65.4 Plus