Clone Sequence Records
BO09076.3prime Sequence
941 bp (845 high quality bases) assembled on 2006-01-10
> BO09076.3prime
ATGGTCTAGAAAGCTTGCTACTTTATCGTAATCAATATTCGAATTACACG
CCCATTCCGGCAATTCGGTTTCGTACTCCCAACCAACGCCCTTGTATTTC
CATGCATGCAAGTACATTATGAGATCCTTTGTGCCGGGGTCTCTGTAGTT
TATCTTGCATTCAGAACATTGCGGATCCGAAGTTGTCTTCTTGGAATCAA
AGGACCTGTCTGGTTCCTCATAGCACGTTTGGGTGGCAATCTGTGCAGTA
GCATCGTTACTTGGTTCAAGGTTTTTTGAAATCACAGGCTTTTCAGTTTC
ACTATTAATAGGAGCCTGAACTACTGAGGGAGCCTCTACTACTGAAGTAC
TTGCTGCTACGTCTTTTATTTCCCCTGATACGATTTGATCTCCTTCCAAG
CCCAACCAGTTTTCTGCATTATGAATGCTAATTAGGTTACTGATCAACTG
TTCCTCGGTTATTCCACCGATATCTCCTCCTCTTCCTTTCAATGGACCGA
AAACTTCATGGTTGTACAAAGGATCATTTGAAATGGGATAGCCCAAGAAT
TGTAAATGCACTCGTATTTGGTGCATTCGTCCTGTTAGTGGTTTGCACAA
AACAATACTATCACTGCCCACCTCGCCGATTCTTTTAAATGTGGTCTTAC
AGTCCTTGCCCTTCGGTGAAACCTTACAAACACCTATTTTGTAGCTCACG
ACGTCGATTTTCTCATTGCATTCAACTATGCCATCTGGAAAGCGTCCTTC
AACGCGGCAAACGTATTCCTTTTGCACTTGGCGAGTTCGGATTTGCAGCT
CCAATTCGCGGGCTTTTTCAGCAGTCCGTCCAAACAAAAGTAGGCCAGAT
GTGAGACGATCCAATCTGTGAATGGTTCGCANGGTCTTCAGATTGTGCTC
CTTGGCCAGGATGAAAACTACCCGTGTGTGTCTATATCTTT
BO09076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6187-PA | 1644 | RluA-2-RA | 738..1641 | 922..19 | 4476 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RE | 1988 | CG6187-RE | 1008..1929 | 940..19 | 4539 | 99.6 | Minus |
RluA-2-RD | 1880 | CG6187-RD | 900..1821 | 940..19 | 4539 | 99.6 | Minus |
RluA-2-RA | 2013 | CG6187-RA | 1033..1954 | 940..19 | 4539 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10482284..10482575 | 543..252 | 1460 | 100 | Minus |
2L | 23513712 | 2L | 10482043..10482234 | 733..542 | 960 | 100 | Minus |
2L | 23513712 | 2L | 10481777..10481983 | 940..734 | 949 | 97.1 | Minus |
2L | 23513712 | 2L | 10482625..10482787 | 252..90 | 815 | 100 | Minus |
2L | 23513712 | 2L | 10482843..10482916 | 92..19 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:20:14 has no hits.
BO09076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:14 Download gff for
BO09076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 719..1644 | 15..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:21 Download gff for
BO09076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 719..1644 | 15..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:50:36 Download gff for
BO09076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 1032..1959 | 14..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:23 Download gff for
BO09076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 1032..1959 | 14..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:23 Download gff for
BO09076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10481776..10481983 | 734..941 | 97 | -> | Minus |
2L | 10482043..10482233 | 543..733 | 100 | -> | Minus |
2L | 10482285..10482574 | 253..542 | 100 | -> | Minus |
2L | 10482625..10482786 | 91..252 | 100 | -> | Minus |
2L | 10482845..10482921 | 14..90 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:50:36 Download gff for
BO09076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10481776..10481983 | 734..941 | 97 | -> | Minus |
arm_2L | 10482043..10482233 | 543..733 | 100 | -> | Minus |
arm_2L | 10482285..10482574 | 253..542 | 100 | -> | Minus |
arm_2L | 10482625..10482786 | 91..252 | 100 | -> | Minus |
arm_2L | 10482845..10482921 | 14..90 | 97 | | Minus |
BO09076.5prime Sequence
884 bp (856 high quality bases) assembled on 2006-01-10
> BO09076.5prime
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGAAGCTGCAAT
BO09076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6187-PA | 1644 | RluA-2-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
CG31719-PA | 2220 | RluA-1-RA | 1156..1245 | 689..778 | 150 | 86.6 | Plus |
CG31719-PB | 2220 | RluA-1-RB | 1156..1245 | 689..778 | 150 | 86.6 | Plus |
CG31719-PC | 2220 | RluA-1-RC | 1156..1245 | 689..778 | 150 | 86.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RC | 2001 | CG6187-RC | 314..1180 | 17..883 | 4320 | 99.9 | Plus |
RluA-2-RD | 1880 | CG6187-RD | 181..1047 | 17..883 | 4320 | 99.9 | Plus |
RluA-2-RA | 2013 | CG6187-RA | 314..1180 | 17..883 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10481347..10481570 | 410..633 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 10477386..10477592 | 17..223 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 10481097..10481286 | 223..412 | 950 | 100 | Plus |
2L | 23513712 | 2L | 10481762..10481924 | 721..883 | 800 | 99.4 | Plus |
2L | 23513712 | 2L | 10481619..10481712 | 631..724 | 470 | 100 | Plus |
2L | 23513712 | 2L | 10464997..10465099 | 819..717 | 230 | 81.6 | Minus |
2L | 23513712 | 2L | 10465286..10465378 | 724..632 | 210 | 81.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:36:19 has no hits.
BO09076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:15 Download gff for
BO09076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 1..867 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:22 Download gff for
BO09076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 1..867 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:53 Download gff for
BO09076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 307..1180 | 11..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:52 Download gff for
BO09076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 307..1180 | 11..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:52 Download gff for
BO09076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10481763..10481924 | 722..884 | 98 | | Plus |
2L | 10477379..10477592 | 11..223 | 98 | -> | Plus |
2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:53 Download gff for
BO09076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10477379..10477592 | 11..223 | 98 | -> | Plus |
arm_2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
arm_2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
arm_2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
arm_2L | 10481763..10481924 | 722..884 | 98 | | Plus |
BO09076.complete Sequence
1675 bp (1675 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631382
> BO09076.complete
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCGCCAAGT
GCAAAAGGAATACGTTTGCCGCGTTGAAGGACGCTTTCCAGATGGCATAG
TTGAATGCAATGAGAAAATCGACGTCGTGAGCTACAAAATAGGTGTTTGT
AAGGTTTCACCGAAGGGCAAGGACTGTAAGACCACATTTAAAAGAATCGG
CGAGGTGGGCAGTGATAGTATTGTTTTGTGCAAACCACTAACAGGACGAA
TGCACCAAATACGAGTGCATTTACAATTCTTGGGCTATCCCATTTCAAAT
GATCCTTTGTACAACCATGAAGTTTTCGGTCCATTGAAAGGAAGAGGAGG
AGATATCGGTGGAATAACCGAGGAACAGTTGATCAGTAACCTAATTAGCA
TTCATAATGCAGAAAACTGGTTGGGCTTGGAAGGAGATCAAATCGTATCA
GGGGAAATAAAAGACGTAGCAGCAAGTACTTCAGTAGTAGAGGCTCCCTC
AGTAGTTCAGGCTCCTATTAATAGTGAAACTGAAAAGCCTGTGATTTCAA
AAAACCTTGAACCAAGTAACGATGCTACTGCACAGATTGCCACCCAAACG
TGCTATGAGGAACCAGACAGGTCCTTTGATTCCAAGAAGACAACTTCGGA
TCCGCAATGTTCTGAATGCAAGATAAACTACAGAGACCCCGGCACAAAGG
ATCTCATAATGTACTTGCATGCATGGAAATACAAGGGCGTTGGTTGGGAG
TACGAAACCGAATTGCCGGAATGGGCGTGTAATTCGAATATTGATTACGA
TAAAGTAGCAAGCTTTCTAGACCAT
BO09076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RD | 1644 | CG6187-PD | 1..1641 | 17..1657 | 8205 | 100 | Plus |
RluA-2-RA | 1644 | CG6187-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
RluA-2-RC | 1632 | CG6187-PC | 1..1629 | 17..1657 | 7990 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RD | 1880 | CG6187-RD | 181..1821 | 17..1657 | 8205 | 100 | Plus |
RluA-2-RA | 2013 | CG6187-RA | 314..1954 | 17..1657 | 8205 | 100 | Plus |
RluA-2-RC | 2001 | CG6187-RC | 314..1942 | 17..1657 | 7990 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10482284..10482575 | 1133..1424 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 10481347..10481570 | 410..633 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 10481762..10481983 | 721..942 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 10477386..10477592 | 17..223 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 10482043..10482234 | 943..1134 | 960 | 100 | Plus |
2L | 23513712 | 2L | 10481097..10481286 | 223..412 | 950 | 100 | Plus |
2L | 23513712 | 2L | 10482625..10482787 | 1424..1586 | 815 | 100 | Plus |
2L | 23513712 | 2L | 10481619..10481712 | 631..724 | 470 | 100 | Plus |
2L | 23513712 | 2L | 10482843..10482916 | 1584..1657 | 370 | 100 | Plus |
2L | 23513712 | 2L | 10464997..10465099 | 819..717 | 230 | 81.6 | Minus |
2L | 23513712 | 2L | 10465286..10465378 | 724..632 | 210 | 81.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:42:45 has no hits.
BO09076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:28 Download gff for
BO09076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 1..1644 | 17..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:15 Download gff for
BO09076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 266..1918 | 11..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:18 Download gff for
BO09076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 314..1954 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:28 Download gff for
BO09076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 266..1918 | 11..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:14 Download gff for
BO09076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 314..1954 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:14 Download gff for
BO09076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
2L | 10481763..10481983 | 722..942 | 100 | -> | Plus |
2L | 10482043..10482233 | 943..1133 | 100 | -> | Plus |
2L | 10477386..10477592 | 17..223 | 100 | -> | Plus |
2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
2L | 10482285..10482574 | 1134..1423 | 100 | -> | Plus |
2L | 10482625..10482786 | 1424..1585 | 100 | -> | Plus |
2L | 10482845..10482916 | 1586..1659 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:18 Download gff for
BO09076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10482625..10482786 | 1424..1585 | 100 | -> | Plus |
arm_2L | 10482845..10482916 | 1586..1659 | 97 | | Plus |
arm_2L | 10477386..10477592 | 17..223 | 100 | -> | Plus |
arm_2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
arm_2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
arm_2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
arm_2L | 10481763..10481983 | 722..942 | 100 | -> | Plus |
arm_2L | 10482043..10482233 | 943..1133 | 100 | -> | Plus |
arm_2L | 10482285..10482574 | 1134..1423 | 100 | -> | Plus |
BO09076.pep Sequence
Translation from 16 to 1675
> BO09076.pep
MESSKLLRNAQTQHGDASSVDVENIFLHRHMLYTNPTSDGNLHDREDSPE
CVWCPDDKDGSPAESKDPPISISEEKSETQSKEVLSEKRKASSTDDEGHV
KKVKLEANSLKTKRPGFSDERYDETSYYFENGLRKVYPYFFTFTTFAKGR
WVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSEKVPKDYKIKHNDLL
ANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFI
LAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYV
CRVEGRFPDGIVECNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGEVGSD
SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGDIGGI
TEEQLISNLISIHNAENWLGLEGDQIVSGEIKDVAASTSVVEAPSVVQAP
INSETEKPVISKNLEPSNDATAQIATQTCYEEPDRSFDSKKTTSDPQCSE
CKINYRDPGTKDLIMYLHAWKYKGVGWEYETELPEWACNSNIDYDKVASF
LDH
BO09076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-PD | 547 | CG6187-PD | 1..547 | 1..547 | 2898 | 100 | Plus |
RluA-2-PA | 547 | CG6187-PA | 1..547 | 1..547 | 2898 | 100 | Plus |
RluA-2-PC | 543 | CG6187-PC | 1..543 | 1..547 | 2865 | 99.3 | Plus |
RluA-1-PC | 739 | CG31719-PC | 248..738 | 87..549 | 1628 | 65.4 | Plus |
RluA-1-PB | 739 | CG31719-PB | 248..738 | 87..549 | 1628 | 65.4 | Plus |