Clone Sequence Records
BO09078.3prime Sequence
944 bp (821 high quality bases) assembled on 2006-01-10
> BO09078.3prime
ATGGTCTAGAAAGCTTGCAAGGGACACTGAAGGGAATGGATTTTGCTTCG
ACACGACCAGTTTGTTGTGAGCATGTGAGATGTACCCCTTAATCTTTCCA
TCGTAAATGAGATTGGCCACGATGCAGTGCGTCTCGTCCAGAGAAACATC
GGTTAAGCCAACGAAATGCAAGGCGGAGAGGAAGTCACCCATGTCCAACT
GATGCGATTTCCGGATGACGAACACCTTCTTGAACAGGTTGCGATACACG
AGGAACTTGAGCTTCTCCACCAGCAGATAGATACCACTCCTGATCAGCAC
CAGCTCCTGGTCCCTGACAATCTCATCAAAGCGATTCACATTGCCAGCCT
TCATGGCCATAGCCAGATCGAGAAACAGCAGGAGATCGTAGCGCTGCAGT
AAGGATTTGCTGGGCAGATATCCCAGCAGCATCTTCACTGGCACCAAATA
GATGAGGATGAGCCTCTTGTTGCTGGCAAACCGATCCGGGCAGTTGCTAA
AGGCATACGACAGATACTGTACGGCTGCCTGGTAGTTGGAGTCGAACATA
GCCCGTCTACCTACAAAATACTTGTAGGTAATTTGCTCCGGCAGCGGAAA
AGAATCCTTGAAGATGCAATTATCGATGGCACGGATAAGGGGCTTGCACA
GATGCAACTTGTTGATTCGAAAATAAATCTTGAATAGCTGGTTTACGAGG
TTCATCATGCCCAGACGCTTGGTGTCCTCCTCTGAAGCTCGTCCATCAGC
GGCACAAACGCGGAAACAGGCCATTATGCAGTCGGCAGCCTTCTCCAATA
CGTGGCCAGGTGTGAATCCTTGACAATGCTTCTCGCANGCCTGCGCCAAG
TACCTTAGATCCAGGCACACGCGGTACATTAGTGGCAGGCACCAATTCTC
GTTCTTCAGCTGCTGCAAAAGCCTCACAACGGCTCCGCAGGCTG
BO09078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7351-PA | 1188 | CG7351-RA | 260..1185 | 944..19 | 4561 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1275 | CG7351-RA | 299..1224 | 944..19 | 4589 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11626739..11627664 | 944..19 | 4589 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:00:05 has no hits.
BO09078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:18 Download gff for
BO09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 260..1188 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:26 Download gff for
BO09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 260..1188 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:38 Download gff for
BO09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 299..1224 | 19..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:40:00 Download gff for
BO09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 299..1224 | 19..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:40:00 Download gff for
BO09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11626739..11627664 | 19..944 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:38 Download gff for
BO09078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11619839..11620764 | 19..944 | 99 | | Minus |
BO09078.5prime Sequence
874 bp (852 high quality bases) assembled on 2006-01-10
> BO09078.5prime
GAAGTTATCAGTCGACATGTTCGGCACCGTAAATAACTATTTATCCGGCG
TTTTGCACGCCGCCCAGGATTTAGATGGCGAGTCCTTGGCCACGTATCTC
TCCTTACGAGACGTGCACGTTCAGAACCACAATTTGTACATTGCCCAGCC
GGAAAAGTTGGTGGATCGATTCCTGAAACCGCCACTGGACGAAGTTGTGT
CCGCCCACCTGAAGGTGCTGTATCACCTGGCACAGGAGCCTCCTGGTTAC
ATGGAAGCCTACACCCAACAGTCGGCAGCCTGCGGAGCCGTTGTGAGGCT
TTTGCAGCAGCTGAAGGACGAGAATTGGTGCCTGCCACTAATGTACCGCG
TGTGCCTGGATCTAAGGTACTTGGCGCAGGCCTGCGAGAAGCATTGTCAA
GGATTCACACCTGGCCACGTATTGGAGAAGGCTGCCGACTGCATAATGGC
CTGTTTCCGCGTTTGTGCCGCTGATGGACGAGCTTCAGAGGAGGACACCA
AGCGTCTGGGCATGATGAACCTCGTAAACCAGCTATTCAAGATTTATTTT
CGAATCAACAAGTTGCATCTGTGCAAGCCCCTTATCCGTGCCATCGATAA
TTGCATCTTCAAGGATTCTTTTCCGCTGCCGGAGCAAATTACCTACAAGT
ATTTTGTAGGTAGACGGGCTATGTTCGACTCCAACTACCAGGCAGCCGTA
CAGTATCTGTCGTATGCCTTTAGCAACTGCCCGGATCGGTTTGCCAGCAA
CAAGAGGCTCATCCTCATCTATTTGGTGCCAGTGAAGATGCTGCTGGGAT
ATCTGCCCAGCAAATCCTTACTGCAGCGCTACGATCTCCTGCTGTTTCTC
GATCTGGCTATGGCCATGAAGGCT
BO09078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7351-PA | 1188 | CG7351-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1275 | CG7351-RA | 40..897 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11626480..11627337 | 17..874 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:38:50 has no hits.
BO09078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:19 Download gff for
BO09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:27 Download gff for
BO09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:28 Download gff for
BO09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 34..897 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:40 Download gff for
BO09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 34..897 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:40 Download gff for
BO09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11626479..11627337 | 16..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:28 Download gff for
BO09078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11619579..11620437 | 16..874 | 99 | | Plus |
BO09078.complete Sequence
1219 bp assembled on 2008-08-15
GenBank Submission: FJ631383
> BO09078.complete
GAAGTTATCAGTCGACATGTTCGGCACCGTAAATAACTATTTATCCGGCG
TTTTGCACGCCGCCCAGGATTTAGATGGCGAGTCCTTGGCCACGTATCTC
TCCTTACGAGACGTGCACGTTCAGAACCACAATTTGTACATTGCCCAGCC
GGAAAAGTTGGTGGATCGATTCCTGAAACCGCCACTGGACGAAGTTGTGT
CCGCCCACCTGAAGGTGCTGTATCACCTGGCACAGGAGCCTCCTGGTTAC
ATGGAAGCCTACACCCAACAGTCGGCAGCCTGCGGAGCCGTTGTGAGGCT
TTTGCAGCAGCTGAAGGACGAGAATTGGTGCCTGCCACTAATGTACCGCG
TGTGCCTGGATCTAAGGTACTTGGCGCAGGCCTGCGAGAAGCATTGTCAA
GGATTCACACCTGGCCACGTATTGGAGAAGGCTGCCGACTGCATAATGGC
CTGTTTCCGCGTTTGTGCCGCTGATGGACGAGCTTCAGAGGAGGACACCA
AGCGTCTGGGCATGATGAACCTCGTAAACCAGCTATTCAAGATTTATTTT
CGAATCAACAAGTTGCATCTGTGCAAGCCCCTTATCCGTGCCATCGATAA
TTGCATCTTCAAGGATTCTTTTCCGCTGCCGGAGCAAATTACCTACAAGT
ATTTTGTAGGTAGACGGGCTATGTTCGACTCCAACTACCAGGCAGCCGTA
CAGTATCTGTCGTATGCCTTTAGCAACTGCCCGGATCGGTTTGCCAGCAA
CAAGAGGCTCATCCTCATCTATTTGGTGCCAGTGAAGATGCTGCTGGGAT
ATCTGCCCAGCAAATCCTTACTGCAGCGCTACGATCTCCTGCTGTTTCTC
GATCTGGCTATGGCCATGAAGGCTGGCAATGTGAATCGCTTTGATGAGAT
TGTCAGGGACCAGGAGCTGGTGCTGATCAGGAGTGGTATCTATCTGCTGG
TGGAGAAGCTCAAGTTCCTCGTGTATCGCAACCTGTTCAAGAAGGTGTTC
GTCATCCGGAAATCGCATCAGTTGGACATGGGTGACTTCCTCTCCGCCTT
GCATTTCGTTGGCTTAACCGATGTTTCTCTGGACGAGACGCACTGCATCG
TGGCCAATCTCATTTACGATGGAAAGATTAAGGGGTACATCTCACATGCT
CACAACAAACTGGTCGTGTCGAAGCAAAATCCATTCCCTTCAGTGTCCCT
TGCAAGCTTTCTAGACCAT
BO09078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1188 | CG7351-PA | 1..1185 | 17..1201 | 5910 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-RA | 1275 | CG7351-RA | 40..1224 | 17..1201 | 5910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11626480..11627664 | 17..1201 | 5910 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:15:16 has no hits.
BO09078.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:31 Download gff for
BO09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-RA | 35..1225 | 9..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:56 Download gff for
BO09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 45..1224 | 22..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:32 Download gff for
BO09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7351-RA | 46..1225 | 22..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:57 Download gff for
BO09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCID2-RA | 45..1224 | 22..1203 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:57 Download gff for
BO09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11626485..11627664 | 22..1203 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:56 Download gff for
BO09078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11619585..11620764 | 22..1203 | 99 | | Plus |
BO09078.pep Sequence
Translation from 16 to 1219
> BO09078.pep
MFGTVNNYLSGVLHAAQDLDGESLATYLSLRDVHVQNHNLYIAQPEKLVD
RFLKPPLDEVVSAHLKVLYHLAQEPPGYMEAYTQQSAACGAVVRLLQQLK
DENWCLPLMYRVCLDLRYLAQACEKHCQGFTPGHVLEKAADCIMACFRVC
AADGRASEEDTKRLGMMNLVNQLFKIYFRINKLHLCKPLIRAIDNCIFKD
SFPLPEQITYKYFVGRRAMFDSNYQAAVQYLSYAFSNCPDRFASNKRLIL
IYLVPVKMLLGYLPSKSLLQRYDLLLFLDLAMAMKAGNVNRFDEIVRDQE
LVLIRSGIYLLVEKLKFLVYRNLFKKVFVIRKSHQLDMGDFLSALHFVGL
TDVSLDETHCIVANLIYDGKIKGYISHAHNKLVVSKQNPFPSVSLASFLD
H
BO09078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCID2-PA | 395 | CG7351-PA | 1..395 | 1..395 | 2060 | 100 | Plus |
