Clone Sequence Records
BO09079.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-01-10
> BO09079.5prime
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CGCAAGCTTTCTAGACC
BO09079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14216-PA | 588 | CG14216-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 1368 | CG14216-RC | 83..670 | 14..601 | 2940 | 100 | Plus |
Ssu72-RA | 2186 | CG14216-RA | 83..670 | 14..601 | 2940 | 100 | Plus |
Ssu72-RB | 2183 | CG14216-RB | 83..667 | 14..601 | 2885 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19664935..19665193 | 244..502 | 1295 | 100 | Plus |
X | 23542271 | X | 19664643..19664872 | 14..243 | 1150 | 100 | Plus |
X | 23542271 | X | 19665251..19665350 | 502..601 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:55:36 has no hits.
BO09079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:21 Download gff for
BO09079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:30 Download gff for
BO09079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:43 Download gff for
BO09079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..670 | 10..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:53 Download gff for
BO09079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..670 | 10..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:53 Download gff for
BO09079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19664640..19664872 | 10..243 | 99 | -> | Plus |
X | 19664935..19665193 | 244..502 | 100 | -> | Plus |
X | 19665252..19665350 | 503..601 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:43 Download gff for
BO09079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19558673..19558905 | 10..243 | 99 | -> | Plus |
arm_X | 19558968..19559226 | 244..502 | 100 | -> | Plus |
arm_X | 19559285..19559383 | 503..601 | 100 | | Plus |
BO09079.3prime Sequence
617 bp (616 high quality bases) assembled on 2006-01-10
> BO09079.3prime
ATGGTCTAGAAAGCTTGCGTAGAAGAGCACCGAGTGCAGGATGACCCGCT
TGCGGCGCTCCTCGAACTCCTGGATCAATTCGTCGATGTCGTTGTCCAGG
TCCGTGGACTTGGCCATCATGTTTATCATGTCTGTGATGACAAAGGCGCC
CATTAGCGCATCTTCAGCGTTGTCCACCACATCCACGTTGAGAACGTGCA
CGGGTCGGTTGTCCACGGATTCCATGGACTCCATGTGCATCACCACCAGG
TCGTAGACGCGCTCTTCCACAGTGACGATGATGTCGAACTGCTCTTTGGT
GTCCTGAAACCGTTCCGGGCACTTCTTTATGCGACGATTGCGGTCGAGCA
TGTGTAGCAGGCCGTTCTGTGTGTAGAACTCCTTGTCCTTGGACTCCAGG
TCGCGGTAGATGTCCTCGTATTTGGTGCCAAACTCGTAAACATTCGGCTT
GTCGAACGCCATGCCCGGTAGCTTGACGCGCTCGCCGGTGCCGTAGGAGC
GCACATTGAAACCCTTCTTGGCCAGAAAGTTGTGCGCCTCCATTGAGCGA
TTCATGTTCGAGGAACAGACTACGGCGACGGCGAGCTTGCTAGGATCAGT
CATGTCGACTGATAACT
BO09079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14216-PA | 588 | CG14216-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 1368 | CG14216-RC | 83..670 | 606..19 | 2940 | 100 | Minus |
Ssu72-RA | 2186 | CG14216-RA | 83..670 | 606..19 | 2940 | 100 | Minus |
Ssu72-RB | 2183 | CG14216-RB | 83..667 | 606..19 | 2885 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19664935..19665193 | 376..118 | 1295 | 100 | Minus |
X | 23542271 | X | 19664643..19664872 | 606..377 | 1150 | 100 | Minus |
X | 23542271 | X | 19665251..19665350 | 118..19 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:40:53 has no hits.
BO09079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:20 Download gff for
BO09079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:28 Download gff for
BO09079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:29 Download gff for
BO09079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..670 | 19..610 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:26 Download gff for
BO09079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..670 | 19..610 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:26 Download gff for
BO09079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19664640..19664872 | 377..610 | 99 | -> | Minus |
X | 19664935..19665193 | 118..376 | 100 | -> | Minus |
X | 19665252..19665350 | 19..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:29 Download gff for
BO09079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19558673..19558905 | 377..610 | 99 | -> | Minus |
arm_X | 19558968..19559226 | 118..376 | 100 | -> | Minus |
arm_X | 19559285..19559383 | 19..117 | 100 | | Minus |
BO09079.complete Sequence
619 bp (619 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631384
> BO09079.complete
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CGCAAGCTTTCTAGACCAT
BO09079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 588 | CG14216-PC | 1..585 | 17..601 | 2925 | 100 | Plus |
Ssu72-RA | 588 | CG14216-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Ssu72-RB | 585 | CG14216-PB | 1..582 | 17..601 | 2845 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 1368 | CG14216-RC | 83..670 | 14..601 | 2940 | 100 | Plus |
Ssu72-RA | 2186 | CG14216-RA | 83..670 | 14..601 | 2940 | 100 | Plus |
Ssu72-RB | 2183 | CG14216-RB | 83..667 | 14..601 | 2860 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19664935..19665193 | 244..502 | 1295 | 100 | Plus |
X | 23542271 | X | 19664643..19664872 | 14..243 | 1150 | 100 | Plus |
X | 23542271 | X | 19665251..19665350 | 502..601 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:36 has no hits.
BO09079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:28 Download gff for
BO09079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-RA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:00 Download gff for
BO09079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-RA | 74..664 | 10..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:54 Download gff for
BO09079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 86..670 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:28 Download gff for
BO09079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-RA | 74..664 | 10..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:02 Download gff for
BO09079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 86..670 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:02 Download gff for
BO09079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19664646..19664872 | 17..243 | 100 | -> | Plus |
X | 19664935..19665193 | 244..502 | 100 | -> | Plus |
X | 19665252..19665350 | 503..603 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:54 Download gff for
BO09079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19558679..19558905 | 17..243 | 100 | -> | Plus |
arm_X | 19558968..19559226 | 244..502 | 100 | -> | Plus |
arm_X | 19559285..19559383 | 503..603 | 98 | | Plus |
BO09079.pep Sequence
Translation from 16 to 619
> BO09079.pep
MTDPSKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAF
DKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQ
DTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVDNAEDAL
MGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFYASFLD
H
BO09079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-PC | 195 | CG14216-PC | 1..195 | 1..195 | 1007 | 100 | Plus |
Ssu72-PA | 195 | CG14216-PA | 1..195 | 1..195 | 1007 | 100 | Plus |
Ssu72-PB | 194 | CG14216-PB | 1..194 | 1..195 | 986 | 99 | Plus |