Clone BO09079 Report

Search the DGRC for BO09079

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG14216-RA
Protein status:BO09079.pep: validated full length
Sequenced Size:619

Clone Sequence Records

BO09079.5prime Sequence

617 bp (616 high quality bases) assembled on 2006-01-10

> BO09079.5prime
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CGCAAGCTTTCTAGACC

BO09079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14216-PA 588 CG14216-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 1368 CG14216-RC 83..670 14..601 2940 100 Plus
Ssu72-RA 2186 CG14216-RA 83..670 14..601 2940 100 Plus
Ssu72-RB 2183 CG14216-RB 83..667 14..601 2885 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19664935..19665193 244..502 1295 100 Plus
X 23542271 X 19664643..19664872 14..243 1150 100 Plus
X 23542271 X 19665251..19665350 502..601 500 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:55:36 has no hits.

BO09079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:21 Download gff for BO09079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 17..604 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:30 Download gff for BO09079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 17..604 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:43 Download gff for BO09079.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..670 10..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:53 Download gff for BO09079.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..670 10..601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:53 Download gff for BO09079.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19664640..19664872 10..243 99 -> Plus
X 19664935..19665193 244..502 100 -> Plus
X 19665252..19665350 503..601 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:43 Download gff for BO09079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19558673..19558905 10..243 99 -> Plus
arm_X 19558968..19559226 244..502 100 -> Plus
arm_X 19559285..19559383 503..601 100   Plus

BO09079.3prime Sequence

617 bp (616 high quality bases) assembled on 2006-01-10

> BO09079.3prime
ATGGTCTAGAAAGCTTGCGTAGAAGAGCACCGAGTGCAGGATGACCCGCT
TGCGGCGCTCCTCGAACTCCTGGATCAATTCGTCGATGTCGTTGTCCAGG
TCCGTGGACTTGGCCATCATGTTTATCATGTCTGTGATGACAAAGGCGCC
CATTAGCGCATCTTCAGCGTTGTCCACCACATCCACGTTGAGAACGTGCA
CGGGTCGGTTGTCCACGGATTCCATGGACTCCATGTGCATCACCACCAGG
TCGTAGACGCGCTCTTCCACAGTGACGATGATGTCGAACTGCTCTTTGGT
GTCCTGAAACCGTTCCGGGCACTTCTTTATGCGACGATTGCGGTCGAGCA
TGTGTAGCAGGCCGTTCTGTGTGTAGAACTCCTTGTCCTTGGACTCCAGG
TCGCGGTAGATGTCCTCGTATTTGGTGCCAAACTCGTAAACATTCGGCTT
GTCGAACGCCATGCCCGGTAGCTTGACGCGCTCGCCGGTGCCGTAGGAGC
GCACATTGAAACCCTTCTTGGCCAGAAAGTTGTGCGCCTCCATTGAGCGA
TTCATGTTCGAGGAACAGACTACGGCGACGGCGAGCTTGCTAGGATCAGT
CATGTCGACTGATAACT

BO09079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14216-PA 588 CG14216-RA 1..585 603..19 2925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 1368 CG14216-RC 83..670 606..19 2940 100 Minus
Ssu72-RA 2186 CG14216-RA 83..670 606..19 2940 100 Minus
Ssu72-RB 2183 CG14216-RB 83..667 606..19 2885 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19664935..19665193 376..118 1295 100 Minus
X 23542271 X 19664643..19664872 606..377 1150 100 Minus
X 23542271 X 19665251..19665350 118..19 500 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:40:53 has no hits.

BO09079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:20 Download gff for BO09079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 16..603 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:28 Download gff for BO09079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 16..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:29 Download gff for BO09079.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..670 19..610 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:26 Download gff for BO09079.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..670 19..610 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:26 Download gff for BO09079.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19664640..19664872 377..610 99 -> Minus
X 19664935..19665193 118..376 100 -> Minus
X 19665252..19665350 19..117 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:29 Download gff for BO09079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19558673..19558905 377..610 99 -> Minus
arm_X 19558968..19559226 118..376 100 -> Minus
arm_X 19559285..19559383 19..117 100   Minus

BO09079.complete Sequence

619 bp (619 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631384

> BO09079.complete
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CGCAAGCTTTCTAGACCAT

BO09079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 588 CG14216-PC 1..585 17..601 2925 100 Plus
Ssu72-RA 588 CG14216-PA 1..585 17..601 2925 100 Plus
Ssu72-RB 585 CG14216-PB 1..582 17..601 2845 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 1368 CG14216-RC 83..670 14..601 2940 100 Plus
Ssu72-RA 2186 CG14216-RA 83..670 14..601 2940 100 Plus
Ssu72-RB 2183 CG14216-RB 83..667 14..601 2860 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19664935..19665193 244..502 1295 100 Plus
X 23542271 X 19664643..19664872 14..243 1150 100 Plus
X 23542271 X 19665251..19665350 502..601 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:46:36 has no hits.

BO09079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:28 Download gff for BO09079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..588 17..604 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:00 Download gff for BO09079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 74..664 10..601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:54 Download gff for BO09079.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 86..670 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:28 Download gff for BO09079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 74..664 10..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:02 Download gff for BO09079.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 86..670 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:02 Download gff for BO09079.complete
Subject Subject Range Query Range Percent Splice Strand
X 19664646..19664872 17..243 100 -> Plus
X 19664935..19665193 244..502 100 -> Plus
X 19665252..19665350 503..603 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:54 Download gff for BO09079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19558679..19558905 17..243 100 -> Plus
arm_X 19558968..19559226 244..502 100 -> Plus
arm_X 19559285..19559383 503..603 98   Plus

BO09079.pep Sequence

Translation from 16 to 619

> BO09079.pep
MTDPSKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAF
DKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQ
DTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVDNAEDAL
MGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFYASFLD
H

BO09079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-PC 195 CG14216-PC 1..195 1..195 1007 100 Plus
Ssu72-PA 195 CG14216-PA 1..195 1..195 1007 100 Plus
Ssu72-PB 194 CG14216-PB 1..194 1..195 986 99 Plus