Clone BO09080 Report

Search the DGRC for BO09080

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:80
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO09080.pep: validated full length
Sequenced Size:364

Clone Sequence Records

BO09080.3prime Sequence

362 bp (361 high quality bases) assembled on 2006-01-10

> BO09080.3prime
ATGGTCTAGAAAGCTTGCACACGCCGGGCGAGGCCGTACGCAATGCATAA
TAGAGGACACACAATACCTCCGAACCAACGAACCACCGATCCTGTGGACC
ACCGTCATCCTGCCACCGCCGGCGGAGATGTCCTTTTTTGCGCATAGCCA
CAGGCAGAAGGCAACAAAAAATGCGGAAAATACATGTCGCCGTGTTTGTG
TGCTCCTGCTGCAACGGACGCAATTCAAAGGAATTTTTTGTGGCTCGCAG
AGCGAGCGAGCGAGAGAGCCGAGCCGGCCACGTCGTCCTGTGGTCCTTCG
CCTTTCGATCCCCTCACTCCTCGCTCCTGTCCTGTCCCGCTTGACCATGT
CGACTGATAACT

BO09080.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32331-PA 333 CG32331-RA 1..330 348..19 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-02 17:45:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1479681..1480013 351..19 1665 100 Minus
Blast to na_te.dros performed 2015-02-02 17:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 370..437 315..248 106 61.8 Minus
gypsy5 7369 gypsy5 GYPSY5 7369bp 7309..7365 315..259 105 64.9 Minus

BO09080.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:22 Download gff for BO09080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 16..348 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:31 Download gff for BO09080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 16..348 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:09 Download gff for BO09080.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480013 19..357 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:09 Download gff for BO09080.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480013 19..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:59 Download gff for BO09080.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480013 19..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:59 Download gff for BO09080.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480013 19..357 99   Minus

BO09080.5prime Sequence

362 bp (361 high quality bases) assembled on 2006-01-10

> BO09080.5prime
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTGCAA
GCTTTCTAGACC

BO09080.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32331-PA 333 CG32331-RA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 18:50:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1479681..1480013 14..346 1665 100 Plus
Blast to na_te.dros performed 2015-02-12 18:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 370..437 50..117 106 61.8 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 7309..7365 50..106 105 64.9 Plus

BO09080.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:23 Download gff for BO09080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 17..349 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:32 Download gff for BO09080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 17..349 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:04 Download gff for BO09080.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480013 8..346 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:04 Download gff for BO09080.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480013 8..346 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:48 Download gff for BO09080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480013 8..346 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:48 Download gff for BO09080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480013 8..346 99   Plus

BO09080.complete Sequence

364 bp (364 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631385

> BO09080.complete
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTGCAA
GCTTTCTAGACCAT

BO09080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 11:08:51 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 11:08:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1479681..1480013 14..346 1665 100 Plus
Blast to na_te.dros performed 2014-11-27 11:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 370..437 50..117 106 61.8 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 7309..7365 50..106 105 64.9 Plus

BO09080.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:22:35 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:22:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:46 Download gff for BO09080.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1479684..1480013 17..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:46 Download gff for BO09080.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1479684..1480013 17..348 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:19 Download gff for BO09080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479684..1480013 17..348 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:19 Download gff for BO09080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479684..1480013 17..348 99   Plus

BO09080.pep Sequence

Translation from 16 to 364

> BO09080.pep
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPACASFLDH
Sequence BO09080.pep has no blast hits.