Clone Sequence Records
BO09080.3prime Sequence
362 bp (361 high quality bases) assembled on 2006-01-10
> BO09080.3prime
ATGGTCTAGAAAGCTTGCACACGCCGGGCGAGGCCGTACGCAATGCATAA
TAGAGGACACACAATACCTCCGAACCAACGAACCACCGATCCTGTGGACC
ACCGTCATCCTGCCACCGCCGGCGGAGATGTCCTTTTTTGCGCATAGCCA
CAGGCAGAAGGCAACAAAAAATGCGGAAAATACATGTCGCCGTGTTTGTG
TGCTCCTGCTGCAACGGACGCAATTCAAAGGAATTTTTTGTGGCTCGCAG
AGCGAGCGAGCGAGAGAGCCGAGCCGGCCACGTCGTCCTGTGGTCCTTCG
CCTTTCGATCCCCTCACTCCTCGCTCCTGTCCTGTCCCGCTTGACCATGT
CGACTGATAACT
BO09080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32331-PA | 333 | CG32331-RA | 1..330 | 348..19 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-02 17:45:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1479681..1480013 | 351..19 | 1665 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 17:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 370..437 | 315..248 | 106 | 61.8 | Minus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 7309..7365 | 315..259 | 105 | 64.9 | Minus |
BO09080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:22 Download gff for
BO09080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 16..348 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:31 Download gff for
BO09080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 16..348 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:09 Download gff for
BO09080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480013 | 19..357 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:09 Download gff for
BO09080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480013 | 19..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:59 Download gff for
BO09080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480013 | 19..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:59 Download gff for
BO09080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480013 | 19..357 | 99 | | Minus |
BO09080.5prime Sequence
362 bp (361 high quality bases) assembled on 2006-01-10
> BO09080.5prime
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTGCAA
GCTTTCTAGACC
BO09080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32331-PA | 333 | CG32331-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 18:50:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1479681..1480013 | 14..346 | 1665 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 18:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 370..437 | 50..117 | 106 | 61.8 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 7309..7365 | 50..106 | 105 | 64.9 | Plus |
BO09080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:23 Download gff for
BO09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 17..349 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:32 Download gff for
BO09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 17..349 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:04 Download gff for
BO09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480013 | 8..346 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:04 Download gff for
BO09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480013 | 8..346 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:48 Download gff for
BO09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480013 | 8..346 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:48 Download gff for
BO09080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480013 | 8..346 | 99 | | Plus |
BO09080.complete Sequence
364 bp (364 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631385
> BO09080.complete
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTGCAA
GCTTTCTAGACCAT
BO09080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 11:08:51 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 11:08:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1479681..1480013 | 14..346 | 1665 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 11:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 370..437 | 50..117 | 106 | 61.8 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 7309..7365 | 50..106 | 105 | 64.9 | Plus |
BO09080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:22:35 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:22:35 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:46 Download gff for
BO09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479684..1480013 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:46 Download gff for
BO09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479684..1480013 | 17..348 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:19 Download gff for
BO09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479684..1480013 | 17..348 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:19 Download gff for
BO09080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479684..1480013 | 17..348 | 99 | | Plus |
BO09080.pep Sequence
Translation from 16 to 364
> BO09080.pep
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPACASFLDH
Sequence BO09080.pep has no blast hits.