Clone Sequence Records
BO09083.3prime Sequence
926 bp (904 high quality bases) assembled on 2006-01-10
> BO09083.3prime
ATGGTCTAGAAAGCTTGCGAAACCCTTTACGTGTTTAACCTTGGGCCTCT
TAGCTGGCGGGGCACAGGGATAGTCCTCGATGATAGTATTCTGGCCGGGC
AGCAAGATAGAATACTCGCGGCCAAATTCAACAGGCGATTCCTTTTTGGG
ACTCAAAAGGCGCTCTCCGATGTCCTGATCGGAATTAAGGGCTGGAATGA
CTGAATAGTTCGCTGTAGTGGCGCCATATAGCTTTGGTAGACTTGTACCG
GGAACCATGTCGGGATTTCCCTCGGTCACCTCGTCCTCAGTGGGTACCAC
TGTCTGACTGGGCAATTGTTCCAACCAATTGGCCATGCGTTGTTCAGGTT
CCAGCTCCTTCCCCTTTATACGCTCATCGAACATTTCTCTTGTTACGTCT
CGTGTGGTGTCGTACTCCTCCATATCCCACACGTCCAGCAAACGGGTCGA
CATCATGTCCGTGTAGTGGGACAGCTTGTAAGCGGATTTCTGCCAGGGAC
CGCGACTGATGCTCTTCTGCTTTTTAACATTTCTCTTACTGGCAGCTTTC
CTTTTGGGTTGCCGTTTTGGTTTCACCTTGGTTTTTTTCTTAGGCGTTTT
CTTACCACCTTTCTTGGATTCCGAAGGTTCTTCCTTTACCTTTTCAGAGG
CTGGGCTTTCATCTTCTGAAACATCAGTATCTTCTATGCCATAGTCAATT
TCGATTTCCTCTACGATTAAAGGTTTTTCTTCAGGTTTTGATCTTTTGGC
ACCATCTCGAAAGATGTCTCTTATCTCTGGTATCGACTGGACTTGTGTGC
AGCGGATGTTCTCGCGTTGGACGCGCTCATTAACGGCATTGGCAAGGTAG
CGAATGGCTTCCGTTGTATGAGTTCCGGTTCTGATCTGCTGGACATGCTC
CTCTTCATCCCCTAGCGTTAGTCTTT
BO09083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10496-PA | 2529 | CG10496-RA | 1619..2526 | 926..19 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1C-like-RA | 2753 | CG10496-RA | 1729..2636 | 926..19 | 4510 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21499020..21499927 | 19..926 | 4510 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:06:18 has no hits.
BO09083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:24 Download gff for
BO09083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-PA | 1619..2529 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:33 Download gff for
BO09083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-PA | 1619..2529 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:11:59 Download gff for
BO09083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-RA | 1729..2642 | 11..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:33:29 Download gff for
BO09083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TAF1C-like-RA | 1729..2642 | 11..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:33:29 Download gff for
BO09083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21499014..21499927 | 11..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:11:59 Download gff for
BO09083.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17386519..17387432 | 11..926 | 99 | | Plus |
BO09083.5prime Sequence
888 bp (845 high quality bases) assembled on 2006-01-10
> BO09083.5prime
GAAGTTATCAGTCGACATGCCGCGACGCTATCAAACAGCTCTCAATTCGG
CCAAATACAGTGCCCAGGTCAAGACCAAAACTAGTGACAACGAATCCGAT
TCCGAAGATGATCTTCCGCCGGATCAAGATGCTGAGGATAACAATGAGCC
AGATAATCTGCGCAGCATTTTGGAAAATGCGCCGCACTTCTCTTATCCCG
GCTTGAACACTGGAATGTTGGGCCAACTCTTGTACGATCATCAGGATAAT
CCGAAGCAGGACTTGCCAAATTGCTCGGTTACGGTGCCGCTACCCCTCTT
CCTGGCAAAGGATGGACAAACTCCCCGAGTGGAGGCATGCGTCCAAAGGC
CATTCCGCTACGACGATTGGACACGGCAATTGCAATTAGGCAAGGCTATA
TTTGATAGGCGACTTAAAAATATGAGACAGCGTGTACAGAAGCAGGAGCA
AGGTGTACACGATGCCAGTCTGTTTGAGATGGCTGAGCACATAGCCCAAC
AGGAGAATTCCTTCTTCAGGGACAGCTACGATTACTACTACACAGGCGGA
AACCTAAACACGATTCCGTTTGATGGAAACGATCAGCTGGCCATGCATGT
CAGCGGTAATAAGCTCAGAGATTTGCACTTTTCCCGAGATTATGGTGAGG
CGGAGTTTTGGCAACCATTGCATTCGGCTACGATAGAGGAATCCTCCAGC
GAAGTCTTTGAACTTCTTCCGCTCCACAATTTAAATCGCAGTCAAATGTT
CCTGGCACGGTTGCTGAAGGAGGTTTCCCTATACGAACTTAAATGCAAAG
ACGAACAGGATTCGGATTCAGATTACGAACTCATTCGCCATTGCATGGTT
AGCAGTCAAGTAGCTCCTTTTACAAGCGCTGCACAATC
BO09083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10496-PA | 2529 | CG10496-RA | 1..872 | 17..888 | 4335 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1C-like-RA | 2753 | CG10496-RA | 109..982 | 15..888 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21500674..21501548 | 888..14 | 4360 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:47:16 has no hits.
BO09083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:24 Download gff for
BO09083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:35 Download gff for
BO09083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-PA | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:05 Download gff for
BO09083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-RA | 106..982 | 12..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:17 Download gff for
BO09083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TAF1C-like-RA | 106..982 | 12..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:17 Download gff for
BO09083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21500674..21501553 | 5..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:05 Download gff for
BO09083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17388179..17389058 | 5..888 | 99 | | Minus |
BO09083.complete Sequence
2560 bp (2560 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631386
> BO09083.complete
GAAGTTATCAGTCGACATGCCGCGACGCTATCAAACAGCTCTCAATTCGG
CCAAATACAGTGCCCAGGTCAAGACCAAAACTAGTGACAACGAATCCGAT
TCCGAAGATGATCTTCCGCCGGATCAAGATGCTGAGGATAACAATGAGCC
AGATAATCTGCGCAGCATTTTGGAAAATGCGCCGCACTTCTCTTATCCCG
GCTTGAACACTGGAATGTTGGGCCAACTCTTGTACGATCATCAGGATAAT
CCGAAGCAGGACTTGCCAAATTGCTCGGTTACGGTGCCGCTACCCCTCTT
CCTGGCAAAGGATGGACAAACTCCCCGAGTGGAGGCATGCGTCCAAAGGC
CATTCCGCTACGACGATTGGACACGGCAATTGCAATTAGGCAAGGCTATA
TTTGATAGGCGACTTAAAAATATGAGACAGCGTGTACAGAAGCAGGAGCA
AGGTGTACACGATGCCAGTCTGTTTGAGATGGCTGAGCACATAGCCCAAC
AGGAGAATTCCTTCTTCAGGGACAGCTACGATTACTACTACACAGGCGGA
AACCTAAACACGATTCCGTTTGATGGAAACGATCAGCTGGCCATGCATGT
CAGCGGTAATAAGCTCAGAGATTTGCACTTTTCCCGAGATTATGGTGAGG
CGGAGTTTTGGCAACCATTGCATTCGGCTACGATAGAGGAATCCTCCAGC
GAAGTCTTTGAACTTCTTCCGCTCCACAATTTAAATCGCAGTCAAATGTT
CCTGGCACGGTTGCTGAAGGAGGTTTCCCTATACGAACTTAAATGCAAAG
ACGAACAGGATTCGGATTCAGATTACGAACTCATTCGCCATTGCATGTTT
AGCAGTCAAGTAGCTCCTTTTACAAGCGCTGCACAATCATTGGCCAATGC
CAATACATTGGCCTTAGCTAGCCAGGATAGGTCTTTGCGCTTCGTGGATA
TTTCGACACAACAGGATATAGCCAAGCTTGATGTTTGCTTGCTAAAAGGA
CTGAAGAAAACCTCGAGTACCTGGGCACAGTTAAAGCAAGCAGAGGAAAG
CACCTTTCACTGCCTAACACAGCCAGTTTTGTTTACCGTAGATGTGCGAT
GCAATCTGCCTCTGAATCCCTGCTTTGCCAGCGGCGTTCACTCAAAAGCT
TGCGAGAGGTTCTCTTGTTTGGCCAAGGGTGTGAATCCTAATCTCTTGTA
TGTGGCTAGTAATCACAACTTCCACTGTTTGGATATCAGATGCTTGGGTA
AAAAGCTGACCGATCGAGCTGTCGTCACCTGGACGCATCAGATGACCTAT
CCACCCTGTTTTATTGACACAAGCGTTCACCAGGACAGTGAATATATTGC
GTTAGGTGGACTCTTACCCAAAGATTTGCGAATTTGTGAACTGCAAGGAG
CTCAGGCAAAAAGTGTCGATGAAATGTTCTCGCCGGCAATACCATTTGCG
CCGGTAACCCTGGAAGAAGCTTTAATAGATGCTCGCTTGGGAGGATTTGT
GGATGTCTATGCTGATATAGCAGAGCGGGTAACGACCTGCATTACAGGAA
TGCGCTTTATTGGCTTAGAGGGGGCCAGTGATCAAGCTTTTACCCAGTTG
CTAACCTCCAACAGCTTGGGAGATGTTTACTGCCAAAGACTAACGCTTAG
GGATGAAGAGGAGCATGTCCAGCAGATCAGAACCGGAACTCATACAACGG
AAGCCATTCGCTACCTTGCCAATGCCGTTAATGAGCGCGTCCAACGCGAG
AACATCCGCTGCACACAAGTCCAGTCGATACCAGAGATAAGAGACATCTT
TCGAGATGGTGCCAAAAGATCAAAACCTGAAGAAAAACCTTTAATCGTAG
AGGAAATCGAAATTGACTATGGCATAGAAGATACTGATGTTTCAGAAGAT
GAAAGCCCAGCCTCTGAAAAGGTAAAGGAAGAACCTTCGGAATCCAAGAA
AGGTGGTAAGAAAACGCCTAAGAAAAAAACCAAGGTGAAACCAAAACGGC
AACCCAAAAGGAAAGCTGCCAGTAAGAGAAATGTTAAAAAGCAGAAGAGC
ATCAGTCGCGGTCCCTGGCAGAAATCCGCTTACAAGCTGTCCCACTACAC
GGACATGATGTCGACCCGTTTGCTGGACGTGTGGGATATGGAGGAGTACG
ACACCACACGAGACGTAACAAGAGAAATGTTCGATGAGCGTATAAAGGGG
AAGGAGCTGGAACCTGAACAACGCATGGCCAATTGGTTGGAACAATTGCC
CAGTCAGACAGTGGTACCCACTGAGGACGAGGTGACCGAGGGAAATCCCG
ACATGGTTCCCGGTACAAGTCTACCAAAGCTATATGGCGCCACTACAGCG
AACTATTCAGTCATTCCAGCCCTTAATTCCGATCAGGACATCGGAGAGCG
CCTTTTGAGTCCCAAAAAGGAATCGCCTGTTGAATTTGGCCGCGAGTATT
CTATCTTGCTGCCCGGCCAGAATACTATCATCGAGGACTATCCCTGTGCC
CCGCCAGCTAAGAGGCCCAAGGTTAAACACGTAAAGGGTTTCGCAAGCTT
TCTAGACCAT
BO09083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1C-like-RA | 2529 | CG10496-PA | 1..2526 | 17..2542 | 12630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1C-like-RA | 2753 | CG10496-RA | 109..2636 | 15..2542 | 12640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21499020..21501548 | 2542..14 | 12645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:06:16 has no hits.
BO09083.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:01 Download gff for
BO09083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-RA | 1..2529 | 17..2543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:05 Download gff for
BO09083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-RA | 344..2880 | 12..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:44 Download gff for
BO09083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-RA | 111..2636 | 17..2544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:02 Download gff for
BO09083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10496-RA | 344..2880 | 12..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:52 Download gff for
BO09083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TAF1C-like-RA | 111..2636 | 17..2544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:52 Download gff for
BO09083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21499016..21501545 | 17..2544 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:44 Download gff for
BO09083.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17386521..17389050 | 17..2544 | 99 | | Minus |
BO09083.pep Sequence
Translation from 16 to 2560
> BO09083.pep
MPRRYQTALNSAKYSAQVKTKTSDNESDSEDDLPPDQDAEDNNEPDNLRS
ILENAPHFSYPGLNTGMLGQLLYDHQDNPKQDLPNCSVTVPLPLFLAKDG
QTPRVEACVQRPFRYDDWTRQLQLGKAIFDRRLKNMRQRVQKQEQGVHDA
SLFEMAEHIAQQENSFFRDSYDYYYTGGNLNTIPFDGNDQLAMHVSGNKL
RDLHFSRDYGEAEFWQPLHSATIEESSSEVFELLPLHNLNRSQMFLARLL
KEVSLYELKCKDEQDSDSDYELIRHCMFSSQVAPFTSAAQSLANANTLAL
ASQDRSLRFVDISTQQDIAKLDVCLLKGLKKTSSTWAQLKQAEESTFHCL
TQPVLFTVDVRCNLPLNPCFASGVHSKACERFSCLAKGVNPNLLYVASNH
NFHCLDIRCLGKKLTDRAVVTWTHQMTYPPCFIDTSVHQDSEYIALGGLL
PKDLRICELQGAQAKSVDEMFSPAIPFAPVTLEEALIDARLGGFVDVYAD
IAERVTTCITGMRFIGLEGASDQAFTQLLTSNSLGDVYCQRLTLRDEEEH
VQQIRTGTHTTEAIRYLANAVNERVQRENIRCTQVQSIPEIRDIFRDGAK
RSKPEEKPLIVEEIEIDYGIEDTDVSEDESPASEKVKEEPSESKKGGKKT
PKKKTKVKPKRQPKRKAASKRNVKKQKSISRGPWQKSAYKLSHYTDMMST
RLLDVWDMEEYDTTRDVTREMFDERIKGKELEPEQRMANWLEQLPSQTVV
PTEDEVTEGNPDMVPGTSLPKLYGATTANYSVIPALNSDQDIGERLLSPK
KESPVEFGREYSILLPGQNTIIEDYPCAPPAKRPKVKHVKGFASFLDH
BO09083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1C-like-PA | 842 | CG10496-PA | 1..842 | 1..842 | 4417 | 100 | Plus |
