Clone Sequence Records
BO09088.3prime Sequence
881 bp (816 high quality bases) assembled on 2006-01-10
> BO09088.3prime
ATGGTCTAGAAAGCTTGCCTTTTGACGAAACTGATGATGATGACTCTTGC
GAATGTTGGCTCCGTTGTGTTGCTGTCGCTGGGAATGTGATCTTGTGGGT
CCATGTTCGCCGGCATCGGCCCGGCGCAAAACTTCGGCGTAGGATAAGTC
TAACTTTTTAAGTTTATGTAAGTCTTGCGATACCGTGTTATGATAAAACT
CGACGCCATTGAGCTCTATTACTCGGCCCCGAGAAGTTTGGGGAGTATTC
ATATTCTTGTTATAGATCACCATGGGAGAGCCATTCCAGTTGCTTGAGGA
TGGAGTTGTCCGTCTGCGGTTACTGCGTCCGAATTCAGCATTCAATGTAT
CCGTACACATCTTTGAGCTCCCTTGTCCACCACCACGGTTGTTCATGGCC
AGAGGACTGTTCCTGGGAGTAAATTCCCGGGAGTTAAACAATTCGATGCG
ATCTCCAGATGAGCTTTGGTTTCGGTGCTTTCGTCGGTTCTTCTTCTTGA
TTCCGACACCTACGGTTAGATATTCGAGTGGTTCGCGCTTGAGTGGAGTA
AGTATCTGGCCATTCTCCCTTATGGGTTTATAATTCGGTTCGCCGACAGT
TGTTTCCTTCGAGGAGCTGTTTAACAAAGTGGATTGCGTTAGGGACGATT
GGTTTTGTTGGTTTCGGACATCAAAGATGTGTTTTTTGGCTGTCTTCCGC
TCCAGTTTGGTAACGCACTCGGACATTGCAATGGACTGGTTGGATATAAC
TGAGGATACGACGCTCTGTGTGTCGTCAATGAAGTCATCTGGAGATTCCT
CCCTCTCGGGTGTTACCGGGGGTACTTTGGCCGCCACCAAGGGTAATTTT
TCTGTAATCTGTGCGTCGTCATGCAGGGACG
BO09088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1962-PA | 2373 | CG1962-RA | 1508..2370 | 881..19 | 4315 | 100 | Minus |
| CG1962-PC | 2373 | CG1962-RC | 1508..2370 | 881..19 | 4315 | 100 | Minus |
| CG1962-PB | 2373 | CG1962-RB | 1508..2370 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cen-RB | 2706 | CG1962-RB | 1642..2504 | 881..19 | 4315 | 100 | Minus |
| Cen-RA | 2841 | CG1962-RA | 1777..2639 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20679123..20679985 | 19..881 | 4315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:01:55 has no hits.
BO09088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:30 Download gff for
BO09088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-PC | 1508..2373 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:43 Download gff for
BO09088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-PB | 1508..2373 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:47:43 Download gff for
BO09088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 1777..2653 | 5..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:16 Download gff for
BO09088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 1777..2653 | 5..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:16 Download gff for
BO09088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20679109..20679985 | 5..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:47:43 Download gff for
BO09088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20679109..20679985 | 5..881 | 99 | | Plus |
BO09088.5prime Sequence
933 bp (836 high quality bases) assembled on 2006-01-10
> BO09088.5prime
GAAGTTATCAGTCGACATGGAGGAATCCAATCACGGTTCGGCTGGCTGTG
AAAACGTATCGCAGTTCATGCTCGATGACCTACAATTGGCAGCAGAGCTG
GGAAAAACGCTCCTGGAACGCAATAAGGAGCTGGAAACCTTCATCAAGGA
GTACAAGATTAAGGGGGATGAGCAGGAACTGGAGATCTTGCATCTGCGCA
AGCACATTAATGCGATGACCGAGGTGAATGATTCACGGCTTAAGGTCTAC
GAGCAGCTGGAAGTGGGCATTCAGGATCTGGAGCGTGCCAATCAGCGGCT
AAATCTGGAGAAGAATCGGGACAAGAAGCAGATTAAGACGCTGACCACCA
ACACGGAAGTCCTGGAAGCCCGCTGCGAGGAACTGAGTCAACTTCTGAGC
GATGCTCGGCAATCCCTGAGCACCGAGCGGCGGAAGGTGGATCAGTACCA
GCAGGAACGCTATAGGATGCAGCATTCGACCGAGGGTTCTGTGTCCAGTC
ACAGCATTCAATCGCTGTGCAAGGAGCAGAGTGTTGAGTTCTCCAAACTA
GATGTTATGGCCATAGCGAACTCGACAGGATTGGAGGATATCTCCTTCAG
TAATGCCACCATGTGCGAGAGGACCGCCGTTAAGGGTGAAGACAACGAGG
AATTGGTAAAGCTGCTCAGCGAAATGGAGGTGTTAAAACGTGACTTCTTG
GCCGAACAGCAGCGGTGCACCGAGCTGGAGGAGCAGTTGGTGACCATAAT
CCAAGACAACCAAGGTCTGCAGACACGTCTGCTGGAGAACAGTGCCAATG
AGGGAACAATGTCGATGCACGAGGAGTTCAGCCTCCTGGACGACGTGAGA
CAAGGCCAAATGTGTAGTCGCTGCCTGAGGGATATTAACGAAAGCAACAC
CAATATGGATGATCAATCCTCCATTGCCCCCAC
BO09088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1962-PA | 2373 | CG1962-RA | 1..914 | 17..930 | 4570 | 100 | Plus |
| CG1962-PC | 2373 | CG1962-RC | 1..914 | 17..930 | 4570 | 100 | Plus |
| CG1962-PB | 2373 | CG1962-RB | 1..914 | 17..930 | 4570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cen-RB | 2706 | CG1962-RB | 135..1048 | 17..930 | 4570 | 100 | Plus |
| Cen-RA | 2841 | CG1962-RA | 270..1183 | 17..930 | 4570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20680579..20681492 | 930..17 | 4570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:53:20 has no hits.
BO09088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:31 Download gff for
BO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-PC | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:44 Download gff for
BO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-PB | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:21 Download gff for
BO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 262..1186 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:34 Download gff for
BO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 262..1186 | 10..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:34 Download gff for
BO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20680576..20681500 | 10..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:21 Download gff for
BO09088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20680576..20681500 | 10..933 | 99 | | Minus |
BO09088.complete Sequence
2404 bp (2404 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631387
> BO09088.complete
GAAGTTATCAGTCGACATGGAGGAATCCAATCACGGTTCGGCTGGCTGTG
AAAACGTATCGCAGTTCATGCTCGATGACCTACAATTGGCAGCAGAGCTG
GGAAAAACGCTCCTGGAACGCAATAAGGAGCTGGAAACCTTCATCAAGGA
GTACAAGATTAAGGGGGATGAGCAGGAACTGGAGATCTTGCATCTGCGCA
AGCACATTAATGCGATGACCGAGGTGAATGATTCACGGCTTAAGGTCTAC
GAGCAGCTGGAAGTGGGCATTCAGGATCTGGAGCGTGCCAATCAGCGGCT
AAATCTGGAGAAGAATCGGGACAAGAAGCAGATTAAGACGCTGACCACCA
ACACGGAAGTCCTGGAAGCCCGCTGCGAGGAACTGAGTCAACTTCTGAGC
GATGCTCGGCAATCCCTGAGCACCGAGCGGCGGAAGGTGGATCAGTACCA
GCAGGAACGCTATAGGATGCAGCATTCGACCGAGGGTTCTGTGTCCAGTC
ACAGCATTCAATCGCTGTGCAAGGAGCAGAGTGTTGAGTTCTCCAAACTA
GATGTTATGGCCATAGCGAACTCGACAGGATTGGAGGATATCTCCTTCAG
TAATGCCACCATGTGCGAGAGGACCGCCGTTAAGGGTGAAGACAACGAGG
AATTGGTAAAGCTGCTCAGCGAAATGGAGGTGTTAAAACGTGACTTCTTG
GCCGAACAGCAGCGGTGCACCGAGCTGGAGGAGCAGTTGGTGACCATAAT
CCAAGACAACCAAGGTCTGCAGACACGTCTGCTGGAGAACAGTGCCAATG
AGGGAACAATGTCGATGCACGAGGAGTTCAGCCTCCTGGACGACGTGAGA
CAAGGCCAAATGTGTAGTCGCTGCCTGAGGGATATTAACGAAAGCAACAC
CAATATGGATGATCAATCCTCCATTGCCCCAACCGAAGAAATCTACGAAG
ATGACGATCGCAGCATACTAAGCGAAAGCACCTCGAAATGCGATAATAGT
GGTGCGGATTATAAGGAACGCTTCCGGATTCCCGAGGACCTCAATCCCAA
CTCTAGCGACAAACCAAATCCTTATCGGGACCTAGTCGAGAAATATGAAG
CTCTGGTGGAGGTGAAGAGAACCTCGAATGCGGTCAAGAGCAACTTCACC
AGCAATCCAGATGGGAAGACCATGACCGAGTCCAGTCAAGGCAAAAAATC
AGAAACAATTGTTAACAGCTCAAAGGAATCTGACCTTATGTTGGATTCAA
CACGTAAGCGCACTCCAACCGAGTTTTCGGAATCAGAAACTACATCGTCG
GGATTCTCGGATGAAACTAGCAACAAGTCTACGCAAACTGACGAGCGACC
GAGTTACTTCCTTTGCTCAATAAGTAATGGAAACGATTGTAAATTCAGTA
TTTATGACGACGTCAGCCCCATTGAATCTCATTTCCGTAATCGCCCGGAG
TACAGGGAACTCTTCAAGGAGATATTTGGAGTGCTCAAGAAGGCAGCTGA
TAATAACGAAGAAGACAAGCTTCCGTCCCTGCATGACGACGCACAGATTA
CAGAAAAATTACCCTTGGTGGCGGCCAAAGTACCCCCGGTAACACCCGAG
AGGGAGGAATCTCCAGATGACTTCATTGACGACACACAGAGCGTCGTATC
CTCAGTTATATCCAACCAGTCCATTGCAATGTCCGAGTGCGTTACCAAAC
TGGAGCGGAAGACAGCCAAAAAACACATCTTTGATGTCCGAAACCAACAA
AACCAATCGTCCCTAACGCAATCCACTTTGTTAAACAGCTCCTCGAAGGA
AACAACTGTCGGCGAACCGAATTATAAACCCATAAGGGAGAATGGCCAGA
TACTTACTCCACTCAAGCGCGAACCACTCGAATATCTAACCGTAGGTGTC
GGAATCAAGAAGAAGAACCGACGAAAGCACCGAAACCAAAGCTCATCTGG
AGATCGCATCGAATTGTTTAACTCCCGGGAATTTACTCCCAGGAACAGTC
CTCTGGCCATGAACAACCGTGGTGGTGGACAAGGGAGCTCAAAGATGTGT
ACGGATACATTGAATGCTGAATTCGGACGCAGTAACCGCAGACGGACAAC
TCCATCCTCAAGCAACTGGAATGGCTCTCCCATGGTGATCTATAACAAGA
ATATGAATACTCCCCAAACTTCTCGGGGCCGAGTAATAGAGCTCAATGGC
GTCGAGTTTTATCATAACACGGTATCGCAAGACTTACATAAACTTAAAAA
GTTAGACTTATCCTACGCCGAAGTTTTGCGCCGGGCCGATGCCGGCGAAC
ATGGACCCACAAGATCACATTCCCAGCGACAGCAACACAACGGAGCCAAC
ATTCGCAAGAGTCATCATCATCAGTTTCGTCAAAAGGCAAGCTTTCTAGA
CCAT
BO09088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cen-RB | 2373 | CG1962-PB | 1..2370 | 17..2386 | 11850 | 100 | Plus |
| Cen-RA | 2373 | CG1962-PA | 1..2370 | 17..2386 | 11850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cen-RB | 2706 | CG1962-RB | 135..2504 | 17..2386 | 11850 | 100 | Plus |
| Cen-RA | 2841 | CG1962-RA | 270..2639 | 17..2386 | 11850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20679123..20681492 | 2386..17 | 11850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:43:19 has no hits.
BO09088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:42 Download gff for
BO09088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-RB | 1..2373 | 17..2390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:47 Download gff for
BO09088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-RB | 119..2510 | 10..2400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:16 Download gff for
BO09088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 270..2639 | 17..2388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:49 Download gff for
BO09088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 270..2639 | 17..2388 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:49 Download gff for
BO09088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20679121..20681492 | 17..2388 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:16 Download gff for
BO09088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20679121..20681492 | 17..2388 | 99 | | Minus |
BO09088.pep Sequence
Translation from 16 to 2404
> BO09088.pep
MEESNHGSAGCENVSQFMLDDLQLAAELGKTLLERNKELETFIKEYKIKG
DEQELEILHLRKHINAMTEVNDSRLKVYEQLEVGIQDLERANQRLNLEKN
RDKKQIKTLTTNTEVLEARCEELSQLLSDARQSLSTERRKVDQYQQERYR
MQHSTEGSVSSHSIQSLCKEQSVEFSKLDVMAIANSTGLEDISFSNATMC
ERTAVKGEDNEELVKLLSEMEVLKRDFLAEQQRCTELEEQLVTIIQDNQG
LQTRLLENSANEGTMSMHEEFSLLDDVRQGQMCSRCLRDINESNTNMDDQ
SSIAPTEEIYEDDDRSILSESTSKCDNSGADYKERFRIPEDLNPNSSDKP
NPYRDLVEKYEALVEVKRTSNAVKSNFTSNPDGKTMTESSQGKKSETIVN
SSKESDLMLDSTRKRTPTEFSESETTSSGFSDETSNKSTQTDERPSYFLC
SISNGNDCKFSIYDDVSPIESHFRNRPEYRELFKEIFGVLKKAADNNEED
KLPSLHDDAQITEKLPLVAAKVPPVTPEREESPDDFIDDTQSVVSSVISN
QSIAMSECVTKLERKTAKKHIFDVRNQQNQSSLTQSTLLNSSSKETTVGE
PNYKPIRENGQILTPLKREPLEYLTVGVGIKKKNRRKHRNQSSSGDRIEL
FNSREFTPRNSPLAMNNRGGGQGSSKMCTDTLNAEFGRSNRRRTTPSSSN
WNGSPMVIYNKNMNTPQTSRGRVIELNGVEFYHNTVSQDLHKLKKLDLSY
AEVLRRADAGEHGPTRSHSQRQQHNGANIRKSHHHQFRQKASFLDH
BO09088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cen-PB | 790 | CG1962-PB | 1..790 | 1..790 | 4044 | 100 | Plus |
| Cen-PA | 790 | CG1962-PA | 1..790 | 1..790 | 4044 | 100 | Plus |
