Clone Sequence Records
BO09089.3prime Sequence
943 bp (807 high quality bases) assembled on 2006-01-10
> BO09089.3prime
ATGGTCTAGAAAGCTTGCCTCGATGCCATGGGCGAAGATCATGACCAAAC
CTGGATCGATCATGACGTCCTCAGTCATGTGGAGGTTGTCGCAGCTCAAA
ACGAGCACAGCTTGCTTGCCTGGAATGCGTCGACACACATAGTTGTCGTA
GATCCTACGATTGGTTTGACGTGTCTCTAGCGAACTGAGCCCACGGGGCC
AACGTCGCTCGTGGCAGAACTCCATAAGACTATCCAGGATGTGTGGCGGA
CAGCCCGACTCGGACAAAGCGCGCTTGATCATGAGCTGCAGTGCATCGTC
GGGCGTAGAGATCATTCCCCCCCAGCGCGTAACCCTGGCCCGGGGCAGTG
TGCTGCTCCAGCGGATCACCTCGTCGCGCTCCATCTGGTCGGCTATGGCC
CGCATCGCAGGATTGGAGACGCGCATGGCACGCATAAAGTCCTTGAATAG
CTGCAGCTCGCGCTTCAGTTCGTTGATAGTCAGCTGCTGGTCGGTGAGCT
CCGATTTGAGCTCACCCATTTTTTCCGTCTGCTTGACAATTAAAGTGCGC
AGCTCCCGCACGCAGTTGTGGTCCTTTAGCTCATCCTTGGGTATGTCAAA
GCCGCATCCCTTCTCGCAGGGAAATGGTCGCTTCGGATTGTGAATGCATT
CGTCCAAATGGGAATTGTAGGCGTCTAGCTTGAGAACAGCCGTGCAGCCA
TAAGGCGCATTGTCACAGGTGATTGACAGTCTGGACAGTAGGTTGCGCAA
TATGCGAGGCACTGCCCGCAAGTTGGCAGTAGTCAGGGAATTTCGATCCA
CCGGACAAGTGGGCTGGCGGGTTAGCCACTCGTTAATGCATCCGCGGCAG
AGGGCGTGCTCGCACATCACGGCCTGCAGCGGATCCTCAAGCACTCCGGA
GCAGATGGGACAGGTGAGCTCCTCGTCCACCTCCCCCTGAAAG
BO09089.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17033-PA | 948 | CG17033-RA | 21..945 | 943..19 | 4600 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 1534 | CG17033-RB | 144..1068 | 943..19 | 4610 | 99.9 | Minus |
elgi-RA | 1611 | CG17033-RA | 221..1145 | 943..19 | 4610 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15957135..15957583 | 734..286 | 2245 | 100 | Minus |
3L | 28110227 | 3L | 15957637..15957805 | 287..119 | 845 | 100 | Minus |
3L | 28110227 | 3L | 15956920..15957065 | 876..731 | 715 | 99.3 | Minus |
3L | 28110227 | 3L | 15957864..15957967 | 122..19 | 520 | 100 | Minus |
3L | 28110227 | 3L | 15956770..15956840 | 943..873 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:42:47 has no hits.
BO09089.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:32 Download gff for
BO09089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 21..948 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:46 Download gff for
BO09089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 21..948 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:37:44 Download gff for
BO09089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 221..1150 | 13..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:49 Download gff for
BO09089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 221..1150 | 13..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:49 Download gff for
BO09089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15957639..15957804 | 120..285 | 100 | -> | Minus |
3L | 15957867..15957972 | 13..119 | 97 | | Minus |
3L | 15956770..15956839 | 874..943 | 100 | -> | Minus |
3L | 15956923..15957065 | 731..873 | 99 | -> | Minus |
3L | 15957139..15957583 | 286..730 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:44 Download gff for
BO09089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15950967..15951072 | 13..119 | 97 | | Minus |
arm_3L | 15950023..15950165 | 731..873 | 99 | -> | Minus |
arm_3L | 15949870..15949939 | 874..943 | 100 | -> | Minus |
arm_3L | 15950239..15950683 | 286..730 | 100 | -> | Minus |
arm_3L | 15950739..15950904 | 120..285 | 100 | -> | Minus |
BO09089.5prime Sequence
892 bp (832 high quality bases) assembled on 2006-01-10
> BO09089.5prime
GAAGTTATCAGTCGACATGGGCTACGATGTGAATCGCTTTCAGGGGGAGG
TGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCG
CTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCGCGGATGCATTAACGA
GTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATCGAAATTCCCTGACTA
CTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGCAACCTACTGTCCAGA
CTGTCAATCACCTGTGACAATGCGCCTTATGGCTGCACGGCTGTTCTCAA
GCTAGACGCCTACAATTCCCATTTGGACGAATGCATTCACAATCCGAAGC
GACCATTTCCCTGCGAGAAGGGATGCGGCTTTGACATACCCAAGGATGAG
CTAAAGGACCACAACTGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCA
GACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGA
CTATCAACGAACTGAAGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGT
GCCATGCGCGTCTCCAATCCTGCGATGCGGGCCATAGCCGACCAGATGGA
GCGCGACGAGGTGATCCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTA
CGCGCTGGGGGGGAATGATCTCTACGCCCGACGATGCACTGCAGCTCATG
ATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCCACACATCCTGGATAG
TCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCTCAGTTCGC
TAGAGACACGTCAAACCAATCGTAGGATCTACGACNACTATGTGTGTCGA
CGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGAC
BO09089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17033-PA | 948 | CG17033-RA | 1..876 | 17..892 | 4361 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 1534 | CG17033-RB | 124..999 | 17..892 | 4369 | 99.9 | Plus |
elgi-RA | 1611 | CG17033-RA | 201..1076 | 17..892 | 4369 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15957135..15957583 | 246..694 | 2245 | 100 | Plus |
3L | 28110227 | 3L | 15957637..15957805 | 693..861 | 834 | 99.4 | Plus |
3L | 28110227 | 3L | 15956920..15957065 | 104..249 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15956750..15956840 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:00:07 has no hits.
BO09089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:33 Download gff for
BO09089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:47 Download gff for
BO09089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:47 Download gff for
BO09089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1076 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:19 Download gff for
BO09089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1076 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:19 Download gff for
BO09089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15957639..15957804 | 695..860 | 99 | -> | Plus |
3L | 15957867..15957898 | 861..892 | 100 | | Plus |
3L | 15956750..15956839 | 17..106 | 100 | -> | Plus |
3L | 15956923..15957065 | 107..249 | 100 | -> | Plus |
3L | 15957139..15957583 | 250..694 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:47 Download gff for
BO09089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15949850..15949939 | 17..106 | 100 | -> | Plus |
arm_3L | 15950023..15950165 | 107..249 | 100 | -> | Plus |
arm_3L | 15950239..15950683 | 250..694 | 100 | -> | Plus |
arm_3L | 15950739..15950904 | 695..860 | 99 | -> | Plus |
arm_3L | 15950967..15950998 | 861..892 | 100 | | Plus |
BO09089.complete Sequence
979 bp (979 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631388
> BO09089.complete
GAAGTTATCAGTCGACATGGGCTACGATGTGAATCGCTTTCAGGGGGAGG
TGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCG
CTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCGCGGATGCATTAACGA
GTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATCGAAATTCCCTGACTA
CTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGCAACCTACTGTCCAGA
CTGTCAATCACCTGTGACAATGCGCCTTATGGCTGCACGGCTGTTCTCAA
GCTAGACGCCTACAATTCCCATTTGGACGAATGCATTCACAATCCGAAGC
GACCATTTCCCTGCGAGAAGGGATGCGGCTTTGACATACCCAAGGATGAG
CTAAAGGACCACAACTGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCA
GACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGA
CTATCAACGAACTGAAGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGT
GCCATGCGCGTCTCCAATCCTGCGATGCGGGCCATAGCCGACCAGATGGA
GCGCGACGAGGTGATCCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTA
CGCGCTGGGGGGGAATGATCTCTACGCCCGACGATGCACTGCAGCTCATG
ATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCCACACATCCTGGATAG
TCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCTCAGTTCGC
TAGAGACACGTCAAACCAATCGTAGGATCTACGACAACTATGTGTGTCGA
CGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGACAACCTCCA
CATGACTGAGGACGTCATGATCGATCCAGGTTTGGTCATGATCTTCGCCC
ATGGCATCGAGGCAAGCTTTCTAGACCAT
BO09089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 948 | CG17033-PB | 1..945 | 17..961 | 4725 | 100 | Plus |
elgi-RA | 948 | CG17033-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-RB | 1534 | CG17033-RB | 124..1068 | 17..961 | 4725 | 100 | Plus |
elgi-RA | 1611 | CG17033-RA | 201..1145 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15957135..15957583 | 246..694 | 2245 | 100 | Plus |
3L | 28110227 | 3L | 15957637..15957805 | 693..861 | 845 | 100 | Plus |
3L | 28110227 | 3L | 15956920..15957065 | 104..249 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15957864..15957967 | 858..961 | 520 | 100 | Plus |
3L | 28110227 | 3L | 15956750..15956840 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:22:51 has no hits.
BO09089.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:27 Download gff for
BO09089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-RA | 1..948 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:32 Download gff for
BO09089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-RA | 201..1150 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:03 Download gff for
BO09089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1145 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:27 Download gff for
BO09089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17033-RA | 201..1150 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:13 Download gff for
BO09089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elgi-RA | 201..1145 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:13 Download gff for
BO09089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15956923..15957065 | 107..249 | 100 | -> | Plus |
3L | 15956750..15956839 | 17..106 | 100 | -> | Plus |
3L | 15957139..15957583 | 250..694 | 100 | -> | Plus |
3L | 15957639..15957804 | 695..860 | 100 | -> | Plus |
3L | 15957867..15957967 | 861..963 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:03 Download gff for
BO09089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15949850..15949939 | 17..106 | 100 | -> | Plus |
arm_3L | 15950023..15950165 | 107..249 | 100 | -> | Plus |
arm_3L | 15950239..15950683 | 250..694 | 100 | -> | Plus |
arm_3L | 15950739..15950904 | 695..860 | 100 | -> | Plus |
arm_3L | 15950967..15951067 | 861..963 | 98 | | Plus |
BO09089.pep Sequence
Translation from 16 to 979
> BO09089.pep
MGYDVNRFQGEVDEELTCPICSGVLEDPLQAVMCEHAFCRGCINEWLTRQ
PTCPVDRNSLTTANLRAVPRILRNLLSRLSITCDNAPYGCTAVLKLDAYN
SHLDECIHNPKRPFPCEKGCGFDIPKDELKDHNCVRELRTLIVKQTEKMG
ELKSELTDQQLTINELKRELQLFKDFMRAMRVSNPAMRAIADQMERDEVI
RWSSTLPRARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDSLMEFC
HERRWPRGLSSLETRQTNRRIYDNYVCRRIPGKQAVLVLSCDNLHMTEDV
MIDPGLVMIFAHGIEASFLDH
BO09089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elgi-PB | 315 | CG17033-PB | 1..315 | 1..315 | 1690 | 100 | Plus |
elgi-PA | 315 | CG17033-PA | 1..315 | 1..315 | 1690 | 100 | Plus |
CG9014-PB | 328 | CG9014-PB | 1..318 | 1..314 | 804 | 45.3 | Plus |
CG9014-PA | 328 | CG9014-PA | 1..318 | 1..314 | 804 | 45.3 | Plus |