Clone Sequence Records
BO09090.3prime Sequence
900 bp (851 high quality bases) assembled on 2006-01-10
> BO09090.3prime
ATGGTCTAGAAAGCTTGCGTCCACATAGTCAATGCCTTTGGCCACAATCG
ATTCCTTGATGGGATCCGGATCGTCGCCCAGCTTGTAGCCCACAATGCAT
GTTACGTCCACGGCCTTGCCTGTCGGATTTAGCAGGAGCATCACCTGGTT
GATGGGCGTGGCCGGGCGGAAGGGCTTGTGCGGCGGCATTTGGCTGTCCG
TCGGCGTCAACAGGCGCACCTTGCAGGGCTTCTTCACGCTGGCCTCGAAC
TGAAAGTCGCGCACTGGCTGGCGACTCTTGTTCTGAGCCGATATCACAAT
CACCGACACACGATGGCCGGGCCGATCGCTGGTGAAGTTCAGACTGAGCT
GCATGTCGTCGTCGTCGAGAACGATGCGCTGCTCCCCGGTGGCCTGTATA
TTGTCCAGTTCCACATTGATTTCGCTTAGCGGCTTGGCCGGCGGTACAAC
TGTCACTGGAGCCACGACGGCTTCATCCTTCTTTTCCACATCATCGCTGA
GTAAAGGAACATCGTCTATGGAATCAACAGTAGCTGTGGCAGTGGCAATA
GCAGGAGCACTATCAGAAGCTGGGTCATTAGCAGTCGTTGGCTCCTCTGG
CGCCTTTATGTGCATTCGTTCGCGTGCCAAGTCGTTTAGCGTGATCTTCT
CGGGATCCCGCTTGAAGCTGGGCATCCGATCCTGGGTGGGCAGGATCTGC
TGGAACAGCTCCTCGCTGAGCATATCGATTTGCGGCATCTTTCTGATTGT
TTCCGGCACTTTGCTGGCGCTGCCTCCATTGCCATTGGCCAAAGCCTCGG
TTGTGGTGCCCTGACTAATGACCTGCGGCTCCAGCAGCGTGGTTGCATTC
TGGAATGGCTGACTCTGCTGCTTCGCTTCGCTTTCNGCCAGAGCGCTGCT
BO09090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3002-PB | 1983 | Gga-RB | 1099..1980 | 900..19 | 4391 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gga-RB | 2360 | CG3002-RB | 1209..2090 | 900..19 | 4399 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9603053..9603724 | 900..229 | 3349 | 99.9 | Minus |
X | 23542271 | X | 9603799..9604010 | 230..19 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:10:44 has no hits.
BO09090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:34 Download gff for
BO09090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-PB | 1099..1983 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:49 Download gff for
BO09090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3002-PB | 1099..1983 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:20:24 Download gff for
BO09090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 1209..2093 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:46 Download gff for
BO09090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 1209..2093 | 15..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:46 Download gff for
BO09090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9603053..9603724 | 229..900 | 99 | -> | Minus |
X | 9603801..9604013 | 15..228 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:20:24 Download gff for
BO09090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9497086..9497757 | 229..900 | 99 | -> | Minus |
arm_X | 9497834..9498046 | 15..228 | 99 | | Minus |
BO09090.5prime Sequence
861 bp (860 high quality bases) assembled on 2006-01-10
> BO09090.5prime
GAAGTTATCAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGC
TGGAGAGAGCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAA
ATGTTCTGCATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCA
GGAGATGATTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGC
GAGCGATTTCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTC
CAGGACGAGGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGT
ATCGAAGAAGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGA
TCATGGAGTGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAG
ATACGCGATGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGG
CACCACGGAGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTG
ACGAGGCCATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTC
AAGCGGGCCAATCTACTGCTGCAGTATCGGATGGCACAGGAGGCGCGTCG
CAACGATCTGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGA
CGATGCAGCTGCTCAACCAAATGCTGGACACCTACGATCCCGCCAACCAG
GACGTCAGCGAAACACTGCACGAGCTATACAAGAGCTGCAAGAAGCACAA
GCCCATCTTTCAGCATCTGCCGCAGCTGCTGGACGATTCCGATGCGCAGC
TTGTAGCTGACACTCTGGATGCCAATTGCGCTCTACTGGCCACCATGCAG
CGCTACAAGCT
BO09090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3002-PB | 1983 | Gga-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gga-RB | 2360 | CG3002-RB | 111..955 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9602080..9602675 | 211..806 | 2980 | 100 | Plus |
X | 23542271 | X | 9601253..9601411 | 53..211 | 795 | 100 | Plus |
X | 23542271 | X | 9602743..9602799 | 805..861 | 285 | 100 | Plus |
X | 23542271 | X | 9601140..9601176 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:20:45 has no hits.
BO09090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:35 Download gff for
BO09090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:50 Download gff for
BO09090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3002-PB | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:55 Download gff for
BO09090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 111..955 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:46 Download gff for
BO09090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 111..955 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:46 Download gff for
BO09090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9601140..9601176 | 17..53 | 100 | -> | Plus |
X | 9601254..9601411 | 54..211 | 100 | -> | Plus |
X | 9602081..9602675 | 212..806 | 100 | -> | Plus |
X | 9602745..9602799 | 807..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:55 Download gff for
BO09090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9495173..9495209 | 17..53 | 100 | -> | Plus |
arm_X | 9495287..9495444 | 54..211 | 100 | -> | Plus |
arm_X | 9496114..9496708 | 212..806 | 100 | -> | Plus |
arm_X | 9496778..9496832 | 807..861 | 100 | | Plus |
BO09090.complete Sequence
2014 bp (2014 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631389
> BO09090.complete
GAAGTTATCAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGC
TGGAGAGAGCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAA
ATGTTCTGCATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCA
GGAGATGATTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGC
GAGCGATTTCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTC
CAGGACGAGGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGT
ATCGAAGAAGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGA
TCATGGAGTGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAG
ATACGCGATGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGG
CACCACGGAGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTG
ACGAGGCCATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTC
AAGCGGGCCAATCTACTGCTGCAGTATCGGATGGCACAGGAGGCGCGTCG
CAACGATCTGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGA
CGATGCAGCTGCTCAACCAAATGCTGGACACCTACGATCCCGCCAACCAG
GACGTCAGCGAAACACTGCACGAGCTATACAAGAGCTGCAAGAAGCACAA
GCCCATCTTTCAGCATCTGCCGCAGCTGCTGGACGATTCCGATGCGCAGC
TTGTAGCTGACACTCTGGATGCCAATTGCGCTCTACTGGCCACCATGCAG
CGCTACAAGCTTCTGGTGCCATCGCCCACAAGGAGCACCGCTGCTGCCTT
GACCACGAGTGCTCCAACAGTAGCTAGTTCAGTGAAGTCGACGGCCAGCT
CGACCACAGCCACCACTAGCTCCAATAACGCCCAGTTGCTGAACGAACTG
CTCGGCGATTTGCTCATCGACGGAAGCAATAAAGCTGCAACTACAGCCAC
CACAAGCCTACCAAATGCCGCGGCTAGCGGTTCGAATCCGCTGGCCGATT
TAAGTGACATCTTTAGCAGCGCTCTGGCCGAAAGCGAAGCGAAGCAGCAG
AGTCAGCCATTCCAGAATGCAACCACGCTGCTGGAGCCGCAGGTCATTAG
TCAGGGCACCACAACCGAGGCTTTGGCCAATGGCAATGGAGGCAGCGCCA
GCAAAGTGCCGGAAACAATCAGAAAGATGCCGCAAATCGATATGCTCAGC
GAGGAGCTGTTCCAGCAGATCCTGCCCACCCAGGATCGGATGCCCAGCTT
CAAGCGGGATCCCGAGAAGATCACGCTAAACGACTTGGCACGCGAACGAA
TGCACATAAAGGCGCCAGAGGAGCCAACGACTGCTAATGACCCAGCTTCT
GATAGTGCTCCTGCTATTGCCACTGCCACAGCTACTGTTGATTCCATAGA
CGATGTTCCTTTACTCAGCGATGATGTGGAAAAGAAGGATGAAGCCGTCG
TGGCTCCAGTGACAGTTGTACCGCCGGCCAAGCCGCTAAGCGAAATCAAT
GTGGAACTGGACAATATACAGGCCACCGGGGAGCAGCGCATCGTTCTCGA
CGACGACGACATGCAGCTCAGTCTGAACTTCACCAGCGATCGGCCCGGCC
ATCGTGTGTCGGTGATTGTGATATCGGCTCAGAACAAGAGTCGCCAGCCA
GTGCGCGACTTTCAGTTCGAGGCCAGCGTGAAGAAGCCCTGCAAGGTGCG
CCTGTTGACGCCGACGGACAGCCAAATGCCGCCGCACAAGCCCTTCCGCC
CGGCCACGCCCATCAACCAGGTGATGCTCCTGCTAAATCCGACAGGCAAG
GCCGTGGACGTAACATGCATTGTGGGCTACAAGCTGGGCGACGATCCGGA
TCCCATCAAGGAATCGATTGTGGCCAAAGGCATTGACTATGTGGACGCAA
GCTTTCTAGACCAT
BO09090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gga-RB | 1983 | CG3002-PB | 1..1980 | 17..1996 | 9900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gga-RB | 2360 | CG3002-RB | 111..2090 | 17..1996 | 9900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9602743..9603724 | 805..1786 | 4910 | 100 | Plus |
X | 23542271 | X | 9602080..9602675 | 211..806 | 2980 | 100 | Plus |
X | 23542271 | X | 9603799..9604010 | 1785..1996 | 1060 | 100 | Plus |
X | 23542271 | X | 9601253..9601411 | 53..211 | 795 | 100 | Plus |
X | 23542271 | X | 9601140..9601176 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:47 has no hits.
BO09090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:43 Download gff for
BO09090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 1..1983 | 17..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:49 Download gff for
BO09090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 107..2089 | 17..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:29 Download gff for
BO09090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 111..2090 | 17..1998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:43 Download gff for
BO09090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 107..2089 | 17..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:53 Download gff for
BO09090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gga-RB | 111..2090 | 17..1998 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:53 Download gff for
BO09090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9601140..9601176 | 17..53 | 100 | -> | Plus |
X | 9601254..9601411 | 54..211 | 100 | -> | Plus |
X | 9602081..9602675 | 212..806 | 100 | -> | Plus |
X | 9602745..9603724 | 807..1786 | 100 | -> | Plus |
X | 9603801..9604010 | 1787..1998 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:29 Download gff for
BO09090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9495173..9495209 | 17..53 | 100 | -> | Plus |
arm_X | 9495287..9495444 | 54..211 | 100 | -> | Plus |
arm_X | 9496114..9496708 | 212..806 | 100 | -> | Plus |
arm_X | 9496778..9497757 | 807..1786 | 100 | -> | Plus |
arm_X | 9497834..9498043 | 1787..1998 | 99 | | Plus |
BO09090.pep Sequence
Translation from 16 to 2014
> BO09090.pep
MTTDESIMEEMLERATNPAQKIDELGVQMFCIVVKSNAQLVHKAQEMIVA
KVRSTNVTEATRAISLLEECMTQCGDDFQDEASKFRFLNELIRLVSKKYK
GAETPHEVKQRIMECLLLWTTEFPQRQKIRDAYDMLRKEGDIEHGTTEAA
VAKRESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQEARRNDLLA
QHRLVLCEVQETMQLLNQMLDTYDPANQDVSETLHELYKSCKKHKPIFQH
LPQLLDDSDAQLVADTLDANCALLATMQRYKLLVPSPTRSTAAALTTSAP
TVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPN
AAASGSNPLADLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTT
EALANGNGGSASKVPETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPE
KITLNDLARERMHIKAPEEPTTANDPASDSAPAIATATATVDSIDDVPLL
SDDVEKKDEAVVAPVTVVPPAKPLSEINVELDNIQATGEQRIVLDDDDMQ
LSLNFTSDRPGHRVSVIVISAQNKSRQPVRDFQFEASVKKPCKVRLLTPT
DSQMPPHKPFRPATPINQVMLLLNPTGKAVDVTCIVGYKLGDDPDPIKES
IVAKGIDYVDASFLDH
BO09090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gga-PB | 660 | CG3002-PB | 1..660 | 1..660 | 3326 | 100 | Plus |