Clone BO09090 Report

Search the DGRC for BO09090

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptGga-RB
Protein status:BO09090.pep: validated full length
Sequenced Size:2014

Clone Sequence Records

BO09090.3prime Sequence

900 bp (851 high quality bases) assembled on 2006-01-10

> BO09090.3prime
ATGGTCTAGAAAGCTTGCGTCCACATAGTCAATGCCTTTGGCCACAATCG
ATTCCTTGATGGGATCCGGATCGTCGCCCAGCTTGTAGCCCACAATGCAT
GTTACGTCCACGGCCTTGCCTGTCGGATTTAGCAGGAGCATCACCTGGTT
GATGGGCGTGGCCGGGCGGAAGGGCTTGTGCGGCGGCATTTGGCTGTCCG
TCGGCGTCAACAGGCGCACCTTGCAGGGCTTCTTCACGCTGGCCTCGAAC
TGAAAGTCGCGCACTGGCTGGCGACTCTTGTTCTGAGCCGATATCACAAT
CACCGACACACGATGGCCGGGCCGATCGCTGGTGAAGTTCAGACTGAGCT
GCATGTCGTCGTCGTCGAGAACGATGCGCTGCTCCCCGGTGGCCTGTATA
TTGTCCAGTTCCACATTGATTTCGCTTAGCGGCTTGGCCGGCGGTACAAC
TGTCACTGGAGCCACGACGGCTTCATCCTTCTTTTCCACATCATCGCTGA
GTAAAGGAACATCGTCTATGGAATCAACAGTAGCTGTGGCAGTGGCAATA
GCAGGAGCACTATCAGAAGCTGGGTCATTAGCAGTCGTTGGCTCCTCTGG
CGCCTTTATGTGCATTCGTTCGCGTGCCAAGTCGTTTAGCGTGATCTTCT
CGGGATCCCGCTTGAAGCTGGGCATCCGATCCTGGGTGGGCAGGATCTGC
TGGAACAGCTCCTCGCTGAGCATATCGATTTGCGGCATCTTTCTGATTGT
TTCCGGCACTTTGCTGGCGCTGCCTCCATTGCCATTGGCCAAAGCCTCGG
TTGTGGTGCCCTGACTAATGACCTGCGGCTCCAGCAGCGTGGTTGCATTC
TGGAATGGCTGACTCTGCTGCTTCGCTTCGCTTTCNGCCAGAGCGCTGCT

BO09090.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3002-PB 1983 Gga-RB 1099..1980 900..19 4391 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-RB 2360 CG3002-RB 1209..2090 900..19 4399 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9603053..9603724 900..229 3349 99.9 Minus
X 23542271 X 9603799..9604010 230..19 1060 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:10:44 has no hits.

BO09090.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:34 Download gff for BO09090.3prime
Subject Subject Range Query Range Percent Splice Strand
Gga-PB 1099..1983 15..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:49 Download gff for BO09090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3002-PB 1099..1983 15..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:20:24 Download gff for BO09090.3prime
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1209..2093 15..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:46 Download gff for BO09090.3prime
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1209..2093 15..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:46 Download gff for BO09090.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9603053..9603724 229..900 99 -> Minus
X 9603801..9604013 15..228 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:20:24 Download gff for BO09090.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9497086..9497757 229..900 99 -> Minus
arm_X 9497834..9498046 15..228 99   Minus

BO09090.5prime Sequence

861 bp (860 high quality bases) assembled on 2006-01-10

> BO09090.5prime
GAAGTTATCAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGC
TGGAGAGAGCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAA
ATGTTCTGCATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCA
GGAGATGATTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGC
GAGCGATTTCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTC
CAGGACGAGGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGT
ATCGAAGAAGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGA
TCATGGAGTGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAG
ATACGCGATGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGG
CACCACGGAGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTG
ACGAGGCCATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTC
AAGCGGGCCAATCTACTGCTGCAGTATCGGATGGCACAGGAGGCGCGTCG
CAACGATCTGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGA
CGATGCAGCTGCTCAACCAAATGCTGGACACCTACGATCCCGCCAACCAG
GACGTCAGCGAAACACTGCACGAGCTATACAAGAGCTGCAAGAAGCACAA
GCCCATCTTTCAGCATCTGCCGCAGCTGCTGGACGATTCCGATGCGCAGC
TTGTAGCTGACACTCTGGATGCCAATTGCGCTCTACTGGCCACCATGCAG
CGCTACAAGCT

BO09090.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3002-PB 1983 Gga-RB 1..845 17..861 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-RB 2360 CG3002-RB 111..955 17..861 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9602080..9602675 211..806 2980 100 Plus
X 23542271 X 9601253..9601411 53..211 795 100 Plus
X 23542271 X 9602743..9602799 805..861 285 100 Plus
X 23542271 X 9601140..9601176 17..53 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:20:45 has no hits.

BO09090.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:35 Download gff for BO09090.5prime
Subject Subject Range Query Range Percent Splice Strand
Gga-PB 1..845 17..861 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:50 Download gff for BO09090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3002-PB 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:55 Download gff for BO09090.5prime
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 111..955 17..861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:46 Download gff for BO09090.5prime
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 111..955 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:46 Download gff for BO09090.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9601140..9601176 17..53 100 -> Plus
X 9601254..9601411 54..211 100 -> Plus
X 9602081..9602675 212..806 100 -> Plus
X 9602745..9602799 807..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:55 Download gff for BO09090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9495173..9495209 17..53 100 -> Plus
arm_X 9495287..9495444 54..211 100 -> Plus
arm_X 9496114..9496708 212..806 100 -> Plus
arm_X 9496778..9496832 807..861 100   Plus

BO09090.complete Sequence

2014 bp (2014 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631389

> BO09090.complete
GAAGTTATCAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGC
TGGAGAGAGCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAA
ATGTTCTGCATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCA
GGAGATGATTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGC
GAGCGATTTCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTC
CAGGACGAGGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGT
ATCGAAGAAGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGA
TCATGGAGTGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAG
ATACGCGATGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGG
CACCACGGAGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTG
ACGAGGCCATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTC
AAGCGGGCCAATCTACTGCTGCAGTATCGGATGGCACAGGAGGCGCGTCG
CAACGATCTGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGA
CGATGCAGCTGCTCAACCAAATGCTGGACACCTACGATCCCGCCAACCAG
GACGTCAGCGAAACACTGCACGAGCTATACAAGAGCTGCAAGAAGCACAA
GCCCATCTTTCAGCATCTGCCGCAGCTGCTGGACGATTCCGATGCGCAGC
TTGTAGCTGACACTCTGGATGCCAATTGCGCTCTACTGGCCACCATGCAG
CGCTACAAGCTTCTGGTGCCATCGCCCACAAGGAGCACCGCTGCTGCCTT
GACCACGAGTGCTCCAACAGTAGCTAGTTCAGTGAAGTCGACGGCCAGCT
CGACCACAGCCACCACTAGCTCCAATAACGCCCAGTTGCTGAACGAACTG
CTCGGCGATTTGCTCATCGACGGAAGCAATAAAGCTGCAACTACAGCCAC
CACAAGCCTACCAAATGCCGCGGCTAGCGGTTCGAATCCGCTGGCCGATT
TAAGTGACATCTTTAGCAGCGCTCTGGCCGAAAGCGAAGCGAAGCAGCAG
AGTCAGCCATTCCAGAATGCAACCACGCTGCTGGAGCCGCAGGTCATTAG
TCAGGGCACCACAACCGAGGCTTTGGCCAATGGCAATGGAGGCAGCGCCA
GCAAAGTGCCGGAAACAATCAGAAAGATGCCGCAAATCGATATGCTCAGC
GAGGAGCTGTTCCAGCAGATCCTGCCCACCCAGGATCGGATGCCCAGCTT
CAAGCGGGATCCCGAGAAGATCACGCTAAACGACTTGGCACGCGAACGAA
TGCACATAAAGGCGCCAGAGGAGCCAACGACTGCTAATGACCCAGCTTCT
GATAGTGCTCCTGCTATTGCCACTGCCACAGCTACTGTTGATTCCATAGA
CGATGTTCCTTTACTCAGCGATGATGTGGAAAAGAAGGATGAAGCCGTCG
TGGCTCCAGTGACAGTTGTACCGCCGGCCAAGCCGCTAAGCGAAATCAAT
GTGGAACTGGACAATATACAGGCCACCGGGGAGCAGCGCATCGTTCTCGA
CGACGACGACATGCAGCTCAGTCTGAACTTCACCAGCGATCGGCCCGGCC
ATCGTGTGTCGGTGATTGTGATATCGGCTCAGAACAAGAGTCGCCAGCCA
GTGCGCGACTTTCAGTTCGAGGCCAGCGTGAAGAAGCCCTGCAAGGTGCG
CCTGTTGACGCCGACGGACAGCCAAATGCCGCCGCACAAGCCCTTCCGCC
CGGCCACGCCCATCAACCAGGTGATGCTCCTGCTAAATCCGACAGGCAAG
GCCGTGGACGTAACATGCATTGTGGGCTACAAGCTGGGCGACGATCCGGA
TCCCATCAAGGAATCGATTGTGGCCAAAGGCATTGACTATGTGGACGCAA
GCTTTCTAGACCAT

BO09090.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-RB 1983 CG3002-PB 1..1980 17..1996 9900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-RB 2360 CG3002-RB 111..2090 17..1996 9900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9602743..9603724 805..1786 4910 100 Plus
X 23542271 X 9602080..9602675 211..806 2980 100 Plus
X 23542271 X 9603799..9604010 1785..1996 1060 100 Plus
X 23542271 X 9601253..9601411 53..211 795 100 Plus
X 23542271 X 9601140..9601176 17..53 185 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:24:47 has no hits.

BO09090.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:43 Download gff for BO09090.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 1..1983 17..2000 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:49 Download gff for BO09090.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 107..2089 17..2000 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:29 Download gff for BO09090.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 111..2090 17..1998 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:43 Download gff for BO09090.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 107..2089 17..2000 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:53 Download gff for BO09090.complete
Subject Subject Range Query Range Percent Splice Strand
Gga-RB 111..2090 17..1998 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:53 Download gff for BO09090.complete
Subject Subject Range Query Range Percent Splice Strand
X 9601140..9601176 17..53 100 -> Plus
X 9601254..9601411 54..211 100 -> Plus
X 9602081..9602675 212..806 100 -> Plus
X 9602745..9603724 807..1786 100 -> Plus
X 9603801..9604010 1787..1998 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:29 Download gff for BO09090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9495173..9495209 17..53 100 -> Plus
arm_X 9495287..9495444 54..211 100 -> Plus
arm_X 9496114..9496708 212..806 100 -> Plus
arm_X 9496778..9497757 807..1786 100 -> Plus
arm_X 9497834..9498043 1787..1998 99   Plus

BO09090.pep Sequence

Translation from 16 to 2014

> BO09090.pep
MTTDESIMEEMLERATNPAQKIDELGVQMFCIVVKSNAQLVHKAQEMIVA
KVRSTNVTEATRAISLLEECMTQCGDDFQDEASKFRFLNELIRLVSKKYK
GAETPHEVKQRIMECLLLWTTEFPQRQKIRDAYDMLRKEGDIEHGTTEAA
VAKRESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQEARRNDLLA
QHRLVLCEVQETMQLLNQMLDTYDPANQDVSETLHELYKSCKKHKPIFQH
LPQLLDDSDAQLVADTLDANCALLATMQRYKLLVPSPTRSTAAALTTSAP
TVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPN
AAASGSNPLADLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTT
EALANGNGGSASKVPETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPE
KITLNDLARERMHIKAPEEPTTANDPASDSAPAIATATATVDSIDDVPLL
SDDVEKKDEAVVAPVTVVPPAKPLSEINVELDNIQATGEQRIVLDDDDMQ
LSLNFTSDRPGHRVSVIVISAQNKSRQPVRDFQFEASVKKPCKVRLLTPT
DSQMPPHKPFRPATPINQVMLLLNPTGKAVDVTCIVGYKLGDDPDPIKES
IVAKGIDYVDASFLDH

BO09090.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Gga-PB 660 CG3002-PB 1..660 1..660 3326 100 Plus