Clone BO09091 Report

Search the DGRC for BO09091

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptMkrn1-RA
Protein status:BO09091.pep: validated full length
Sequenced Size:1192

Clone Sequence Records

BO09091.3prime Sequence

956 bp (757 high quality bases) assembled on 2006-01-10

> BO09091.3prime
ATGGTCTAGAAAGCTTGCGTCTTCATCCGAGTAATCTGAACTTTCGGAAC
TAGTAATATCACTTGAAATCATCTCCAGCCAATGATAATCTCGCCGATCT
ACGTAGTCCCAGAGATATATATCAAGTAAATCGATTATTTCATTCTGGCT
CTGTAACTTTCGGGTGCGCTTCGGCAAACCCACATCGACGATATCTCCGT
TGGGCAGAGCGTGCTTGTAGAAACACTTGTTACCAAAGGGGCACTTGCCC
TCTCCTTTTTTAAAGTATTTGCAGTCCTTTGCTCCCAAAGCGGCGCGGTA
ATCGTTGAGCAATTTGTCCTTTTCCTCCTTGGTCTCCATCCAGAACGCAC
TGGGACAGACAAAATCCGAGCACACGCGACATTCGGGGCAAGCTCGCGTT
ATTTTGTTCTCAAACTGTTTGGCCTGACGCCATGTGCGAATGCACTCCAA
GCAGAATATGTGGTTGCAGTTGGGGAGAATGCCGAAGCGCTTTTCTCTTC
CCGCCTTTTCCATAATCGTGTCAAAGCAGATGCCGCACGTCTTGTCCTTG
GATCTGGCAATGGCGAAGGACAGCTCCATGGCCTGCTCGTGCTGCTGAAG
GCACTCACGGTTGTGACTCCTCCGCTGAACTTGATCCGTGGGATGCAGGC
AATACTGGTCGCACATTTCGCACAGCTCCATGTGAATGGGGTAAGCGGAG
AATTCGCCCCAGGCGCAGGAACTGTTCTCCTCGCCATAGTCCTCTTTGTT
CAGAGACGAAGGTCCGCCCACTACTTCGGCCCAGGAGACACCCGGGGCTA
ATGTATCGTAGCTGGCTCCAGCCTGCGCCTCCATCACCGCCTCAGGGGTC
ACAGTGGTCTCAAATTCGCTTTGTTCGTGGGCAGTATAGCGCTTTTGGCT
AGGCACAACACAGGGGCGTTCGCCCAGTTCCTCTGCTGACTGGAGATGCT
GGCGCT

BO09091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7184-PA 1161 Mkrn1-RA 269..1158 908..19 4400 99.7 Minus
CG7184-PB 1161 Mkrn1-RB 269..1158 908..19 4400 99.7 Minus
CG7184-PA 1161 Mkrn1-RA 220..269 956..907 250 100 Minus
CG7184-PB 1161 Mkrn1-RB 220..269 956..907 250 100 Minus
CG12477-PA 798 CG12477-RA 287..421 548..414 175 85.1 Minus
CG12477-PA 798 CG12477-RA 436..464 399..371 145 100 Minus
CG5347-PA 858 CG5347-RA 547..594 468..421 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-RC 2229 CG7184-RC 425..1363 956..19 4640 99.7 Minus
Mkrn1-RB 2163 CG7184-RB 359..1297 956..19 4640 99.7 Minus
Mkrn1-RA 2884 CG7184-RA 433..1371 956..19 4640 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21532339..21532901 395..956 2735 99.5 Plus
3L 28110227 3L 21531758..21532032 121..395 1375 100 Plus
3L 28110227 3L 18722464..18722851 171..558 860 81.4 Plus
X 23542271 X 14777206..14777681 686..211 745 77.1 Minus
3L 28110227 3L 21531472..21531573 19..120 510 100 Plus
X 23542271 X 14775563..14775931 579..211 495 75.6 Minus
Blast to na_te.dros performed on 2015-02-11 18:30:00 has no hits.

BO09091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:36 Download gff for BO09091.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-PB 220..1161 15..956 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:51 Download gff for BO09091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7184-PB 220..1161 15..956 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:37:45 Download gff for BO09091.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 433..1382 5..956 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:54:21 Download gff for BO09091.3prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 433..1382 5..956 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:54:21 Download gff for BO09091.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21531461..21531573 5..120 96 <- Plus
3L 21531758..21532031 121..394 100 <- Plus
3L 21532339..21532901 395..956 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:37:45 Download gff for BO09091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21524561..21524673 5..120 96 <- Plus
arm_3L 21524858..21525131 121..394 100 <- Plus
arm_3L 21525439..21526001 395..956 99   Plus

BO09091.5prime Sequence

888 bp (803 high quality bases) assembled on 2006-01-10

> BO09091.5prime
GAAGTTATCAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCA
GCGGCATGGCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGC
GGCATCTGCCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCG
CGGTCGTCCCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGC
CTAGTACAAGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCC
AGTCAGCAGAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAA
GCGCTATACTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTG
AGGCGGTGATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCG
GGTGTCTCCTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGA
GGACTATGGCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTT
ACCCCATTCACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCAT
CCCACGGATCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCA
GCACGAGCAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACA
AGACGTGCGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAA
AAGCGCTTCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTG
CATTCGCACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAG
CTTGCCCCGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTC
TGGATGGAGACCAANGAGGAAAAGGACAAATTGCTCAA

BO09091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7184-PA 1161 Mkrn1-RA 1..872 17..888 4341 99.8 Plus
CG7184-PB 1161 Mkrn1-RB 1..872 17..888 4341 99.8 Plus
CG12477-PA 798 CG12477-RA 287..421 645..779 175 85.1 Plus
CG12477-PA 798 CG12477-RA 436..464 794..822 145 100 Plus
CG5347-PA 858 CG5347-RA 547..594 725..772 140 91.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-RC 2229 CG7184-RC 202..1077 13..888 4354 99.8 Plus
Mkrn1-RB 2163 CG7184-RB 136..1011 13..888 4354 99.8 Plus
Mkrn1-RA 2884 CG7184-RA 210..1085 13..888 4354 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21532339..21533124 798..13 3915 99.9 Minus
X 23542271 X 14777206..14777584 507..885 609 77.3 Plus
3L 28110227 3L 18722627..18722851 859..635 555 83.1 Minus
3L 28110227 3L 21531942..21532032 888..798 444 98.9 Minus
X 23542271 X 14775563..14775834 614..885 404 76.5 Plus
Blast to na_te.dros performed on 2015-02-09 09:55:24 has no hits.

BO09091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:37 Download gff for BO09091.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-PB 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:53 Download gff for BO09091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7184-PB 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:40 Download gff for BO09091.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 208..1083 10..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:51 Download gff for BO09091.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 208..1083 10..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:51 Download gff for BO09091.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21531944..21532031 799..886 98 <- Minus
3L 21532339..21533126 10..798 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:40 Download gff for BO09091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21525044..21525131 799..886 98 <- Minus
arm_3L 21525439..21526226 10..798 99   Minus

BO09091.complete Sequence

1192 bp (1192 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631390

> BO09091.complete
GAAGTTATCAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCA
GCGGCATGGCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGC
GGCATCTGCCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCG
CGGTCGTCCCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGC
CTAGTACAAGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCC
AGTCAGCAGAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAA
GCGCTATACTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTG
AGGCGGTGATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCG
GGTGTCTCCTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGA
GGACTATGGCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTT
ACCCCATTCACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCAT
CCCACGGATCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCA
GCACGAGCAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACA
AGACGTGCGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAA
AAGCGCTTCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTG
CATTCGCACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAG
CTTGCCCCGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTC
TGGATGGAGACCAAGGAGGAAAAGGACAAATTGCTCAACGATTACCGCGC
CGCTTTGGGAGCAAAGGACTGCAAATACTTTAAAAAAGGAGAGGGCAAGT
GCCCCTTTGGTAACAAGTGTTTCTACAAGCACGCTCTGCCCAACGGAGAT
ATCGTCGATGTGGGTTTGCCGAAGCGCACCCGAAAGTTACAGAGCCAGAA
TGAAATAATCGATTTACTTGATATATATCTCTGGGACTACGTAGATCGGC
GAGATTATCATTGGCTGGAGATGATTTCAAGTGATATTACTAGTTCCGAA
AGTTCAGATTACTCGGATGAAGACGCAAGCTTTCTAGACCAT

BO09091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-RC 1161 CG7184-PC 1..1158 17..1174 5790 100 Plus
Mkrn1-RB 1161 CG7184-PB 1..1158 17..1174 5790 100 Plus
Mkrn1-RA 1161 CG7184-PA 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-RC 2229 CG7184-RC 202..1363 13..1174 5795 99.9 Plus
Mkrn1-RB 2163 CG7184-RB 136..1297 13..1174 5795 99.9 Plus
Mkrn1-RA 2884 CG7184-RA 210..1371 13..1174 5795 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21532339..21533124 798..13 3915 99.9 Minus
3L 28110227 3L 21531758..21532032 1072..798 1375 100 Minus
3L 28110227 3L 18722464..18722851 1022..635 860 81.4 Minus
X 23542271 X 14777206..14777681 507..982 745 77.1 Plus
3L 28110227 3L 21531472..21531573 1174..1073 510 100 Minus
X 23542271 X 14775563..14775931 614..982 495 75.6 Plus
Blast to na_te.dros performed on 2014-11-27 07:05:33 has no hits.

BO09091.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:29 Download gff for BO09091.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RB 1..1161 17..1178 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:17 Download gff for BO09091.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RB 111..1285 10..1188 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:54 Download gff for BO09091.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 214..1371 17..1176 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:29 Download gff for BO09091.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RB 111..1285 10..1188 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:45 Download gff for BO09091.complete
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 214..1371 17..1176 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:45 Download gff for BO09091.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21531470..21531573 1073..1176 98 <- Minus
3L 21531758..21532031 799..1072 100 <- Minus
3L 21532339..21533120 17..798 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:54 Download gff for BO09091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21524570..21524673 1073..1176 98 <- Minus
arm_3L 21524858..21525131 799..1072 100 <- Minus
arm_3L 21525439..21526220 17..798 100   Minus

BO09091.pep Sequence

Translation from 16 to 1192

> BO09091.pep
MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPEC
EEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAH
EQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEE
NSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAM
ELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWR
QAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAK
DCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDL
LDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDEDASFLDH

BO09091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-PC 386 CG7184-PC 1..386 1..386 2092 100 Plus
Mkrn1-PB 386 CG7184-PB 1..386 1..386 2092 100 Plus
Mkrn1-PA 386 CG7184-PA 1..386 1..386 2092 100 Plus
CG5347-PA 285 CG5347-PA 1..268 14..322 901 56.6 Plus
CG12477-PA 265 CG12477-PA 91..263 205..384 544 54.4 Plus