Clone Sequence Records
BO09091.3prime Sequence
956 bp (757 high quality bases) assembled on 2006-01-10
> BO09091.3prime
ATGGTCTAGAAAGCTTGCGTCTTCATCCGAGTAATCTGAACTTTCGGAAC
TAGTAATATCACTTGAAATCATCTCCAGCCAATGATAATCTCGCCGATCT
ACGTAGTCCCAGAGATATATATCAAGTAAATCGATTATTTCATTCTGGCT
CTGTAACTTTCGGGTGCGCTTCGGCAAACCCACATCGACGATATCTCCGT
TGGGCAGAGCGTGCTTGTAGAAACACTTGTTACCAAAGGGGCACTTGCCC
TCTCCTTTTTTAAAGTATTTGCAGTCCTTTGCTCCCAAAGCGGCGCGGTA
ATCGTTGAGCAATTTGTCCTTTTCCTCCTTGGTCTCCATCCAGAACGCAC
TGGGACAGACAAAATCCGAGCACACGCGACATTCGGGGCAAGCTCGCGTT
ATTTTGTTCTCAAACTGTTTGGCCTGACGCCATGTGCGAATGCACTCCAA
GCAGAATATGTGGTTGCAGTTGGGGAGAATGCCGAAGCGCTTTTCTCTTC
CCGCCTTTTCCATAATCGTGTCAAAGCAGATGCCGCACGTCTTGTCCTTG
GATCTGGCAATGGCGAAGGACAGCTCCATGGCCTGCTCGTGCTGCTGAAG
GCACTCACGGTTGTGACTCCTCCGCTGAACTTGATCCGTGGGATGCAGGC
AATACTGGTCGCACATTTCGCACAGCTCCATGTGAATGGGGTAAGCGGAG
AATTCGCCCCAGGCGCAGGAACTGTTCTCCTCGCCATAGTCCTCTTTGTT
CAGAGACGAAGGTCCGCCCACTACTTCGGCCCAGGAGACACCCGGGGCTA
ATGTATCGTAGCTGGCTCCAGCCTGCGCCTCCATCACCGCCTCAGGGGTC
ACAGTGGTCTCAAATTCGCTTTGTTCGTGGGCAGTATAGCGCTTTTGGCT
AGGCACAACACAGGGGCGTTCGCCCAGTTCCTCTGCTGACTGGAGATGCT
GGCGCT
BO09091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7184-PA | 1161 | Mkrn1-RA | 269..1158 | 908..19 | 4400 | 99.7 | Minus |
CG7184-PB | 1161 | Mkrn1-RB | 269..1158 | 908..19 | 4400 | 99.7 | Minus |
CG7184-PA | 1161 | Mkrn1-RA | 220..269 | 956..907 | 250 | 100 | Minus |
CG7184-PB | 1161 | Mkrn1-RB | 220..269 | 956..907 | 250 | 100 | Minus |
CG12477-PA | 798 | CG12477-RA | 287..421 | 548..414 | 175 | 85.1 | Minus |
CG12477-PA | 798 | CG12477-RA | 436..464 | 399..371 | 145 | 100 | Minus |
CG5347-PA | 858 | CG5347-RA | 547..594 | 468..421 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkrn1-RC | 2229 | CG7184-RC | 425..1363 | 956..19 | 4640 | 99.7 | Minus |
Mkrn1-RB | 2163 | CG7184-RB | 359..1297 | 956..19 | 4640 | 99.7 | Minus |
Mkrn1-RA | 2884 | CG7184-RA | 433..1371 | 956..19 | 4640 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21532339..21532901 | 395..956 | 2735 | 99.5 | Plus |
3L | 28110227 | 3L | 21531758..21532032 | 121..395 | 1375 | 100 | Plus |
3L | 28110227 | 3L | 18722464..18722851 | 171..558 | 860 | 81.4 | Plus |
X | 23542271 | X | 14777206..14777681 | 686..211 | 745 | 77.1 | Minus |
3L | 28110227 | 3L | 21531472..21531573 | 19..120 | 510 | 100 | Plus |
X | 23542271 | X | 14775563..14775931 | 579..211 | 495 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:30:00 has no hits.
BO09091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:36 Download gff for
BO09091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-PB | 220..1161 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:51 Download gff for
BO09091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7184-PB | 220..1161 | 15..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:37:45 Download gff for
BO09091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 433..1382 | 5..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:54:21 Download gff for
BO09091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 433..1382 | 5..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:54:21 Download gff for
BO09091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21531461..21531573 | 5..120 | 96 | <- | Plus |
3L | 21531758..21532031 | 121..394 | 100 | <- | Plus |
3L | 21532339..21532901 | 395..956 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:37:45 Download gff for
BO09091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21524561..21524673 | 5..120 | 96 | <- | Plus |
arm_3L | 21524858..21525131 | 121..394 | 100 | <- | Plus |
arm_3L | 21525439..21526001 | 395..956 | 99 | | Plus |
BO09091.5prime Sequence
888 bp (803 high quality bases) assembled on 2006-01-10
> BO09091.5prime
GAAGTTATCAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCA
GCGGCATGGCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGC
GGCATCTGCCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCG
CGGTCGTCCCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGC
CTAGTACAAGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCC
AGTCAGCAGAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAA
GCGCTATACTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTG
AGGCGGTGATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCG
GGTGTCTCCTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGA
GGACTATGGCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTT
ACCCCATTCACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCAT
CCCACGGATCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCA
GCACGAGCAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACA
AGACGTGCGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAA
AAGCGCTTCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTG
CATTCGCACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAG
CTTGCCCCGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTC
TGGATGGAGACCAANGAGGAAAAGGACAAATTGCTCAA
BO09091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7184-PA | 1161 | Mkrn1-RA | 1..872 | 17..888 | 4341 | 99.8 | Plus |
CG7184-PB | 1161 | Mkrn1-RB | 1..872 | 17..888 | 4341 | 99.8 | Plus |
CG12477-PA | 798 | CG12477-RA | 287..421 | 645..779 | 175 | 85.1 | Plus |
CG12477-PA | 798 | CG12477-RA | 436..464 | 794..822 | 145 | 100 | Plus |
CG5347-PA | 858 | CG5347-RA | 547..594 | 725..772 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkrn1-RC | 2229 | CG7184-RC | 202..1077 | 13..888 | 4354 | 99.8 | Plus |
Mkrn1-RB | 2163 | CG7184-RB | 136..1011 | 13..888 | 4354 | 99.8 | Plus |
Mkrn1-RA | 2884 | CG7184-RA | 210..1085 | 13..888 | 4354 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21532339..21533124 | 798..13 | 3915 | 99.9 | Minus |
X | 23542271 | X | 14777206..14777584 | 507..885 | 609 | 77.3 | Plus |
3L | 28110227 | 3L | 18722627..18722851 | 859..635 | 555 | 83.1 | Minus |
3L | 28110227 | 3L | 21531942..21532032 | 888..798 | 444 | 98.9 | Minus |
X | 23542271 | X | 14775563..14775834 | 614..885 | 404 | 76.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:55:24 has no hits.
BO09091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:37 Download gff for
BO09091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-PB | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:53 Download gff for
BO09091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7184-PB | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:40 Download gff for
BO09091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 208..1083 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:51 Download gff for
BO09091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 208..1083 | 10..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:51 Download gff for
BO09091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21531944..21532031 | 799..886 | 98 | <- | Minus |
3L | 21532339..21533126 | 10..798 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:40 Download gff for
BO09091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21525044..21525131 | 799..886 | 98 | <- | Minus |
arm_3L | 21525439..21526226 | 10..798 | 99 | | Minus |
BO09091.complete Sequence
1192 bp (1192 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631390
> BO09091.complete
GAAGTTATCAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCA
GCGGCATGGCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGC
GGCATCTGCCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCG
CGGTCGTCCCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGC
CTAGTACAAGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCC
AGTCAGCAGAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAA
GCGCTATACTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTG
AGGCGGTGATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCG
GGTGTCTCCTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGA
GGACTATGGCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTT
ACCCCATTCACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCAT
CCCACGGATCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCA
GCACGAGCAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACA
AGACGTGCGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAA
AAGCGCTTCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTG
CATTCGCACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAG
CTTGCCCCGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTC
TGGATGGAGACCAAGGAGGAAAAGGACAAATTGCTCAACGATTACCGCGC
CGCTTTGGGAGCAAAGGACTGCAAATACTTTAAAAAAGGAGAGGGCAAGT
GCCCCTTTGGTAACAAGTGTTTCTACAAGCACGCTCTGCCCAACGGAGAT
ATCGTCGATGTGGGTTTGCCGAAGCGCACCCGAAAGTTACAGAGCCAGAA
TGAAATAATCGATTTACTTGATATATATCTCTGGGACTACGTAGATCGGC
GAGATTATCATTGGCTGGAGATGATTTCAAGTGATATTACTAGTTCCGAA
AGTTCAGATTACTCGGATGAAGACGCAAGCTTTCTAGACCAT
BO09091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkrn1-RC | 1161 | CG7184-PC | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Mkrn1-RB | 1161 | CG7184-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Mkrn1-RA | 1161 | CG7184-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkrn1-RC | 2229 | CG7184-RC | 202..1363 | 13..1174 | 5795 | 99.9 | Plus |
Mkrn1-RB | 2163 | CG7184-RB | 136..1297 | 13..1174 | 5795 | 99.9 | Plus |
Mkrn1-RA | 2884 | CG7184-RA | 210..1371 | 13..1174 | 5795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21532339..21533124 | 798..13 | 3915 | 99.9 | Minus |
3L | 28110227 | 3L | 21531758..21532032 | 1072..798 | 1375 | 100 | Minus |
3L | 28110227 | 3L | 18722464..18722851 | 1022..635 | 860 | 81.4 | Minus |
X | 23542271 | X | 14777206..14777681 | 507..982 | 745 | 77.1 | Plus |
3L | 28110227 | 3L | 21531472..21531573 | 1174..1073 | 510 | 100 | Minus |
X | 23542271 | X | 14775563..14775931 | 614..982 | 495 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:05:33 has no hits.
BO09091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:29 Download gff for
BO09091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RB | 1..1161 | 17..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:17 Download gff for
BO09091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RB | 111..1285 | 10..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:54 Download gff for
BO09091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 214..1371 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:29 Download gff for
BO09091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RB | 111..1285 | 10..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:45 Download gff for
BO09091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 214..1371 | 17..1176 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:45 Download gff for
BO09091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21531470..21531573 | 1073..1176 | 98 | <- | Minus |
3L | 21531758..21532031 | 799..1072 | 100 | <- | Minus |
3L | 21532339..21533120 | 17..798 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:54 Download gff for
BO09091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21524570..21524673 | 1073..1176 | 98 | <- | Minus |
arm_3L | 21524858..21525131 | 799..1072 | 100 | <- | Minus |
arm_3L | 21525439..21526220 | 17..798 | 100 | | Minus |
BO09091.pep Sequence
Translation from 16 to 1192
> BO09091.pep
MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPEC
EEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAH
EQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEE
NSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAM
ELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWR
QAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAK
DCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDL
LDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDEDASFLDH
BO09091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkrn1-PC | 386 | CG7184-PC | 1..386 | 1..386 | 2092 | 100 | Plus |
Mkrn1-PB | 386 | CG7184-PB | 1..386 | 1..386 | 2092 | 100 | Plus |
Mkrn1-PA | 386 | CG7184-PA | 1..386 | 1..386 | 2092 | 100 | Plus |
CG5347-PA | 285 | CG5347-PA | 1..268 | 14..322 | 901 | 56.6 | Plus |
CG12477-PA | 265 | CG12477-PA | 91..263 | 205..384 | 544 | 54.4 | Plus |