Clone Sequence Records
BO09092.3prime Sequence
883 bp (774 high quality bases) assembled on 2006-01-10
> BO09092.3prime
ATGGTCTAGAAAGCTTGCGGACAAGGGTATGGCTTCCACTTGTCGCCGGG
CGGATAGGATAACATCGTTGATGCCCACGCCATCGTATGCAGCTCCACAG
ACAGACAGTGGCAGTTTGTAGGTCTTGATGTAGTTCCGAATGGCTTCAAC
GCGCCGCTTGTGGCCCACAGTGTACTGCGGGATGCACTTGTGCAGCGTGT
GCACTCGACTGAATTTGGGTTCCTCGCGTATCTGCAGCATTTTCTGCACA
TGGCTGGTGGCTAAGTCAAGAATCTGCTTGGGGCTTGGACGATCACCGAA
CCACTGGTCGAACCAATGGCCACCCATCATCACGGTAAGCACAGTGTTCT
CGCCCATGTCGAAGCAGCAGCTGTCGAAGATGACGCCGAGCAGAGGTAAC
TTTTCCACTGGCGGCACTAGCAATCCAAAGCCGTCTTGTTTGAGTAGCTT
GCCGGGGAACTGCATGTTCACTACCAGCACATCCACGTACGGAATGCTCA
AAAGTTGGGCGCTCAGCGAGGGATGCTGCTGCTTTACCAGGGGCGCGAGT
TTGTAGGCGGGCAGGGAGCTGACCACATGCTCCACCGGAACTTCGGCATC
CTTGATGTTCATTCGAACCCCGGAGCTGCTGAAGGTCAGGTTCCGGCATT
CGTTGCTTAGCTGCACGTTCACATCCCGCTCACCTAAGTACTTTCGCATA
GTTTTGGGTAGGTTCTCCAGACCGCCTTTCAGCCCGTACATGGCCCACTT
CTCCTTTACCGCCTGCGCATACAGCTTGGGCTGTCTTTTCGGCAATAGTC
CATCCTTGGTGTCCTTGGTCTTGTTCTTTCTCAAGCGGGAAATGAGTGTG
CCCTTGAGCACTCCTCCGTACTTCTGTTCCTTT
BO09092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5796-PA | 1428 | Ppox-RA | 656..1425 | 788..19 | 3850 | 100 | Minus |
| CG5796-PA | 1428 | Ppox-RA | 561..611 | 883..833 | 255 | 100 | Minus |
| CG5796-PA | 1428 | Ppox-RA | 616..650 | 828..794 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1655 | CG5796-RA | 687..1551 | 883..19 | 4235 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24660301..24661165 | 19..883 | 4205 | 99.1 | Plus |
Blast to na_te.dros performed 2015-02-12 17:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 1145..1186 | 245..204 | 111 | 73.8 | Minus |
BO09092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:38 Download gff for
BO09092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-PA | 561..1428 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:54 Download gff for
BO09092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5796-PA | 561..1428 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:52 Download gff for
BO09092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 687..1554 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:26 Download gff for
BO09092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 687..1554 | 15..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:26 Download gff for
BO09092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24660297..24661165 | 15..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:52 Download gff for
BO09092.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20486019..20486887 | 15..883 | 99 | | Plus |
BO09092.5prime Sequence
945 bp (798 high quality bases) assembled on 2006-01-10
> BO09092.5prime
GAAGTTATCAGTCGACATGACGACGGCCGTGCTGGGAGGCGGATTGAGTG
GACTATCCGCCGGATACTACCTGTTGCGGCGATTCGGGAAGCCGCTGACC
ATCTACGAGGCCTCGCCCCGTGTGGGCGGATGGGTGCGGTCGGAGAATCG
CAAGGATCGCAACTTCATCTTCGAGAGCGGACCGCGAACCATACGCCCAG
TTGGTGAGCCAGGTGCCAATACGCTAGAATTGGTGGAGGATCTGAAGCTG
GAGGTGACTCCCATTCGACGCAGTCATGTCGCAGCACGCAACCGAATGCT
GTATGCCAAGGGACAGCTCTGCATGCTGCCCAACAGTCCCAAGGGTCTCT
TCGGCGTCCTGCCTCCCTTCACGAAGCCGCTATACAAAGCGGTTCTTCGC
GATCTGTTCACAGCAAGCAAGAAAGCGAAGCTGGAGGATGAGAGCATCTA
CAGTTTCGCTGAGCGGCGGTTTGGTAAGGAGATAGCCGACTACGCCATCA
GTCCCATGATCTGCGGTATTTGCGCCGGTGACGCGCGAGAAATAAGTGTG
CGCTTCCTGATGGAGGGGCTCTTTGAAAAGGAACAGAAGTACGGAGGAGT
GCTCAAGGGCACACTCATTTCCCGCTTTGAGAAGAACAAGACCAAGGACA
CCAAGGATGGACTATTTGCCGAAAGACAGCCCAAGCTGTATGCGCAGGCG
GTAAAGGAGAAGTGGGCCATGTACGGGCTGAAAGGCGGTCTGGAGAACCT
ACCCAAAACTATGCGAAAGTACTTAGGTGAGCGGGATGTGAACGTGCAGC
TAAGCAACGAATGCCGGAACCTGACCTTCAGCAGCTCCGGGGTTCGAATG
AACATCAAGGATGCCGAAGTTCCGGTGGAGCATGTGGTCAGCTCCCTGCC
CGCCTACAAACTCGCGCCCCCTGGTAAAGCAGCAGCATCCCTCGC
BO09092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5796-PA | 1428 | Ppox-RA | 1..904 | 17..920 | 4520 | 100 | Plus |
| CG5796-PA | 1428 | Ppox-RA | 901..928 | 918..945 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1655 | CG5796-RA | 126..1054 | 16..945 | 4625 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24660798..24661726 | 945..16 | 4600 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:42:38 has no hits.
BO09092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:39 Download gff for
BO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-PA | 1..928 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:55 Download gff for
BO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5796-PA | 1..928 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:49:23 Download gff for
BO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1054 | 10..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:52:56 Download gff for
BO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1054 | 10..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:52:56 Download gff for
BO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24660798..24661731 | 10..945 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:49:23 Download gff for
BO09092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20486520..20487453 | 10..945 | 99 | | Minus |
BO09092.complete Sequence
1459 bp (1459 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631391
> BO09092.complete
GAAGTTATCAGTCGACATGACGACGGCCGTGCTGGGAGGCGGATTGAGTG
GACTATCCGCCGGATACTACCTGTTGCGGCGATTCGGGAAGCCGCTGACC
ATCTACGAGGCCTCGCCCCGTGTGGGCGGATGGGTGCGGTCGGAGAATCG
CAAGGATCGCAACTTCATCTTCGAGAGCGGACCGCGAACCATACGCCCAG
TTGGTGAGCCAGGTGCCAATACGCTAGAATTGGTGGAGGATCTGAAGCTG
GAGGTGACTCCCATTCGACGCAGTCATGTCGCAGCACGCAACCGAATGCT
GTATGCCAAGGGACAGCTCTGCATGCTGCCCAACAGTCCCAAGGGTCTCT
TCGGCGTCCTGCCTCCCTTCACGAAGCCGCTATACAAAGCGGTTCTTCGC
GATCTGTTCACAGCAAGCAAGAAAGCGAAGCTGGAGGATGAGAGCATCTA
CAGTTTCGCTGAGCGGCGGTTTGGTAAGGAGATAGCCGACTACGCCATCA
GTCCCATGATCTGCGGTATTTGCGCCGGTGACGCGCGAGAAATAAGTGTG
CGCTTCCTGATGGAGGGGCTCTTTGAAAAGGAACAGAAGTACGGAGGAGT
GCTCAAGGGCACACTCATTTCCCGCTTTGAGAAGAACAAGACCAAGGACA
CCAAGGATGGACTATTTGCCGAAAGACAGCCCAAGCTGTATGCGCAGGCG
GTAAAGGAGAAGTGGGCCATGTACGGGCTGAAAGGCGGTCTGGAGAACCT
ACCCAAAACTATGCGAAAGTACTTAGGTGAGCGGGATGTGAACGTGCAGC
TAAGCAACGAATGCCGGAACCTGACCTTCAGCAGCTCCGGGGTTCGAATG
AACATCAAGGATGCCGAAGTTCCGGTGGAGCATGTGGTCAGCTCCCTGCC
CGCCTACAAACTCGCGCCCCTGGTAAAGCAGCAGCATCCCTCGCTGAGCG
CCCAACTTTTGAGCATTCCGTACGTGGATGTGCTGGTAGTGAACATGCAG
TTCCCCGGCAAGCTACTCAAACAAGACGGCTTTGGATTGCTAGTGCCGCC
AGTGGAAAAGTTACCTCTGCTCGGCGTCATCTTCGACAGCTGCTGCTTCG
ACATGGGCGAGAACACTGTGCTTACCGTGATGATGGGTGGCCATTGGTTC
GACCAGTGGTTCGGTGATCGTCCAAGCCCCAAGCAGATTCTTGACTTAGC
CACCAGCCATGTGCAGAAAATGCTGCAGATACGCGAGGAACCCAAATTCA
GTCGAGTGCACACGCTGCACAAGTGCATCCCGCAGTACACTGTGGGCCAC
AAGCGGCGCGTTGAAGCCATTCGGAACTACATCAAGACCTACAAACTGCC
ACTGTCTGTCTGTGGAGCTGCATACGATGGCGTGGGCATCAACGATGTTA
TCCTATCCGCCCGGCGACAAGTGGAAGCCATACCCTTGTCCGCAAGCTTT
CTAGACCAT
BO09092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1428 | CG5796-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1655 | CG5796-RA | 126..1551 | 16..1441 | 7130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24660301..24661726 | 1441..16 | 7130 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 23:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 1145..1186 | 1215..1256 | 111 | 73.8 | Plus |
BO09092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:30 Download gff for
BO09092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 1..1428 | 17..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:19 Download gff for
BO09092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1554 | 10..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:13 Download gff for
BO09092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 127..1551 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:30 Download gff for
BO09092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 121..1554 | 10..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:26 Download gff for
BO09092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 127..1551 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:26 Download gff for
BO09092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24660299..24661725 | 17..1443 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:13 Download gff for
BO09092.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20486021..20487447 | 17..1443 | 99 | | Minus |
BO09092.pep Sequence
Translation from 16 to 1459
> BO09092.pep
MTTAVLGGGLSGLSAGYYLLRRFGKPLTIYEASPRVGGWVRSENRKDRNF
IFESGPRTIRPVGEPGANTLELVEDLKLEVTPIRRSHVAARNRMLYAKGQ
LCMLPNSPKGLFGVLPPFTKPLYKAVLRDLFTASKKAKLEDESIYSFAER
RFGKEIADYAISPMICGICAGDAREISVRFLMEGLFEKEQKYGGVLKGTL
ISRFEKNKTKDTKDGLFAERQPKLYAQAVKEKWAMYGLKGGLENLPKTMR
KYLGERDVNVQLSNECRNLTFSSSGVRMNIKDAEVPVEHVVSSLPAYKLA
PLVKQQHPSLSAQLLSIPYVDVLVVNMQFPGKLLKQDGFGLLVPPVEKLP
LLGVIFDSCCFDMGENTVLTVMMGGHWFDQWFGDRPSPKQILDLATSHVQ
KMLQIREEPKFSRVHTLHKCIPQYTVGHKRRVEAIRNYIKTYKLPLSVCG
AAYDGVGINDVILSARRQVEAIPLSASFLDH
BO09092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-PA | 475 | CG5796-PA | 1..475 | 1..475 | 2469 | 100 | Plus |
