Clone Sequence Records
BO09093.3prime Sequence
886 bp (787 high quality bases) assembled on 2006-01-10
> BO09093.3prime
ATGGTCTAGAAAGCTTGCGTCATCGTCCTCCTCGTCATCATCTTCTTCGC
TGGATTGATCCAACCAAGCCACGAGCTTGGCGAGGCTTTGGCGCAGGTGT
GCATGCTCCTCCTCGTCCAACTGCGCGTACCACGCCTGAATGGCACTCTC
GGACACAAAGTCCTTGTCGTACAGATAGTGCACGATCTGCGAGATCTTCC
CCCGCACTAGATGATTCTCCTCGTACACATCCTCCAGCGCCTTGAGACAA
TCCATCATGGAATCCTCGCTCTTAATGTAGTTGGATACCACAGGGCCCAG
TTGTTTAAAGGCTGCGTTTATGGCCACTAGTACGTTGTCGTTGGCCGGTT
CCACGATGCTCTGCATGCCAAAAACGGCCTTCACCACGTTGAAGTTGACT
TCTTTGAGGGACATGTTGTACGCATAGCGCGAGGAGTTGATTTCTAGGAC
AAGGAAGTCAGGGTTGGACTTCTCCCGGAAGCCCCGTGTCAAGGAATCGA
TGACTTCGCCCAGGAAAATGTTTGTGTCATCGGGCAGTGGCGTTACCGCT
CGCGAGGCATCCTCGTCGTCCTCGCTAAAATCGCTGCAGTAACTGATCTC
GTCCAGCGGCGCCAGCAAGTCTCCCATTTTGGGTATACTGAGCGGCTGCT
GTGGCAACAAGTCCTCGCACTCCGAGTCCTCGGGATCACCCGTCGTCAAA
TCGCTGACAATATAGGCATGCGGACCGATGGACTTCAGCTCCACTACCAC
CTCATCATCGCTACGCCGTCTGCTGGGCGTTCTGGTGATAAGGGTCTTCG
CCAGCGTTTTCTTGGCAGGCAGCACGCTTTTAGCACCGAGCACACAGCCC
GCGCTCACGTCGCAATCCTCGTTGATGATGGCTCCT
BO09093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3806-PA | 2010 | eIF2B-epsilon-RA | 1140..2007 | 886..19 | 4340 | 100 | Minus |
| CG3806-PB | 2010 | eIF2B-epsilon-RB | 1140..2007 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-epsilon-RB | 2447 | CG3806-RB | 1191..2058 | 886..19 | 4340 | 100 | Minus |
| eIF2B-epsilon-RA | 2297 | CG3806-RA | 1191..2058 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1921181..1921548 | 519..886 | 1840 | 100 | Plus |
| X | 23542271 | X | 1920828..1921115 | 231..518 | 1440 | 100 | Plus |
| X | 23542271 | X | 1920555..1920769 | 19..233 | 1075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:25:49 has no hits.
BO09093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:40 Download gff for
BO09093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3806-PA | 1140..2010 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:57 Download gff for
BO09093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3806-PB | 1140..2010 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:36 Download gff for
BO09093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 1201..2073 | 13..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:12 Download gff for
BO09093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 1191..2063 | 13..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:12 Download gff for
BO09093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1920550..1920767 | 13..231 | 99 | <- | Plus |
| X | 1920829..1921115 | 232..518 | 100 | <- | Plus |
| X | 1921181..1921548 | 519..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:36 Download gff for
BO09093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1814583..1814800 | 13..231 | 99 | <- | Plus |
| arm_X | 1814862..1815148 | 232..518 | 100 | <- | Plus |
| arm_X | 1815214..1815581 | 519..886 | 100 | | Plus |
BO09093.5prime Sequence
864 bp (863 high quality bases) assembled on 2006-01-10
> BO09093.5prime
GAAGTTATCAGTCGACATGGCCCAATTCGAGAAGGAGATCGTTCAGGCGG
TGCTGATCGCCGACAACAATGTGTGGAACTTCAAGCCCCTCTCCGACGAG
GGCTCTACGGCCCTGCTGCCGCTGGTCAACGTGCGGATGCTTGACTACGC
TCTCATGGCGCTGAACCGCAGCGGCGTGGAGGAGGTGTTCGTGTACACCA
GCCTCTATCGCTCGAGCATCCGGGAGCACATCAGGGCCGGCATTGCCACG
GACGCAGCCTGGTCATTCAAGATGACCGTCCATGTGATTGGCGGCGAGGG
TTGTCGCTGCTTCGGCGATGCCATGCGTGATTTGGACAATAAGGCGCTGA
TCCGTGGCCACTTCATTCTGCTCGGCGCCGATACGGTGACCAATGCCGAT
CTGCGCCCAGTGCTGGAGCAGCACAAGCGGCAGGCCAAGTTCGACAAGGG
CACGGCCGCCACGCTGGTGTTCAAGGAGTGTGCCAACAATGTGCGCACTG
GCAACGAGGTGCTGATCGCCGTGGACCGTCGCAACGACCGGCTGCACTAC
CACCAGCGGCTGCGGATGCACCACAAGGAGAATCGCTACCAACTACCACT
AGATGTCTTTCTGGGCAACTCGTGTGTGGCGCTGCACCACAACCTCCTAG
ATCCGCAGATTGCCATTGGCTCGCCCTCAATGCTGTCCCTGTTCAACGAC
AACTTTGACTTTCAGACGCGTGATGACTTCGTCAGGNGTTTGTTGATAAA
CGAGGAACTGCTGGACAGCANGATATATGTGGCACTGCTCCCGGCAGCCC
AGTACGCGCACAAGGTGAACAACTGGCCGGCCTACCAGCTGGTTAGTCGG
GACATTATCAACCG
BO09093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3806-PA | 2010 | eIF2B-epsilon-RA | 1..848 | 17..864 | 4202 | 99.7 | Plus |
| CG3806-PB | 2010 | eIF2B-epsilon-RB | 1..848 | 17..864 | 4202 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-epsilon-RB | 2447 | CG3806-RB | 52..899 | 17..864 | 4218 | 99.8 | Plus |
| eIF2B-epsilon-RA | 2297 | CG3806-RA | 52..899 | 17..864 | 4218 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1921840..1922472 | 864..232 | 3143 | 99.7 | Minus |
| X | 23542271 | X | 1922542..1922668 | 235..109 | 635 | 100 | Minus |
| X | 23542271 | X | 1922730..1922823 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:51:53 has no hits.
BO09093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:41 Download gff for
BO09093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3806-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:01:59 Download gff for
BO09093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3806-PB | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:26:25 Download gff for
BO09093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 57..909 | 10..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:13 Download gff for
BO09093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 47..899 | 10..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:13 Download gff for
BO09093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1921840..1922469 | 235..864 | 99 | <- | Minus |
| X | 1922543..1922667 | 110..234 | 100 | <- | Minus |
| X | 1922731..1922828 | 10..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:26:25 Download gff for
BO09093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1815873..1816502 | 235..864 | 99 | <- | Minus |
| arm_X | 1816764..1816861 | 10..109 | 96 | | Minus |
| arm_X | 1816576..1816700 | 110..234 | 100 | <- | Minus |
BO09093.complete Sequence
2041 bp (2041 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631392
> BO09093.complete
GAAGTTATCAGTCGACATGGCCCAATTCGAGAAGGAGATCGTTCAGGCGG
TGCTGATCGCCGACAACAATGTGTGGAACTTCAAGCCCCTCTCCGACGAG
GGCTCTACGGCCCTGCTGCCGCTGGTCAACGTGCGGATGCTTGACTACGC
TCTCATGGCGCTGAACCGCAGCGGCGTGGAGGAGGTGTTCGTGTACACCA
GCCTCTATCGCTCGAGCATCCGGGAGCACATCAGGGCCGGCATTGCCACG
GACGCAGCCTGGTCATTCAAGATGACCGTCCATGTGATTGGCGGCGAGGG
TTGTCGCTGCTTCGGCGATGCCATGCGTGATTTGGACAATAAGGCGCTGA
TCCGTGGCCACTTCATTCTGCTCGGCGCCGATACGGTGACCAATGCCGAT
CTGCGCCCAGTGCTGGAGCAGCACAAGCGGCAGGCCAAGTTCGACAAGGG
CACGGCCGCCACGCTGGTGTTCAAGGAGTGTGCCAACAATGTGCGCACTG
GCAACGAGGTGCTGATCGCCGTGGACCGTCGCAACGACCGGCTGCACTAC
CACCAGCGGCTGCGGATGCACCACAAGGAGAATCGCTACCAACTACCACT
AGATGTCTTTCTGGGCAACTCGTGTGTGGCGCTGCACCACAACCTCCTAG
ATCCGCAGATTGCCATTGGCTCGCCCTCAATGCTGTCCCTGTTCAACGAC
AACTTTGACTTTCAGACGCGTGATGACTTCGTCAGGGGTTTGTTGATAAA
CGAGGAACTGCTGGACAGCAGGATATATGTGGCACTGCTCCCGGCAGCCC
AGTACGCGCACAAGGTGAACAACTGGCCGGCCTACCAGCTGGTTAGTCGG
GACATTATCAACCGGTGGGCCTACCCCTTCGTTCCGGACATAGGCCTTTA
CAAGCTGCAGCAGGAGTACGTCTTCCACAAGGACAACATCTACAAGAGCC
CCGAGGCGCATGTCTCGAAAGTGGCTTTGCTCCAGAACGTGGTCATCGAA
GCGGGCAGTCACGTAGACAGTGGCTCAGTGATTAGTGACAGCGTGATTGG
CGCCAATTGCCGGATCGGCAAGAACTGTCGACTGACCAATGCGTTCCTCA
TGGCCGACGTCACCGTAATGGACAACTGCAGACTGGAGCACTGCGTGGTG
GGCGAAGGAGCCATCATCAACGAGGATTGCGACGTGAGCGCGGGCTGTGT
GCTCGGTGCTAAAAGCGTGCTGCCTGCCAAGAAAACGCTGGCGAAGACCC
TTATCACCAGAACGCCCAGCAGACGGCGTAGCGATGATGAGGTGGTAGTG
GAGCTGAAGTCCATCGGTCCGCATGCCTATATTGTCAGCGATTTGACGAC
GGGTGATCCCGAGGACTCGGAGTGCGAGGACTTGTTGCCACAGCAGCCGC
TCAGTATACCCAAAATGGGAGACTTGCTGGCGCCGCTGGACGAGATCAGT
TACTGCAGCGATTTTAGCGAGGACGACGAGGATGCCTCGCGAGCGGTAAC
GCCACTGCCCGATGACACAAACATTTTCCTGGGCGAAGTCATCGATTCCT
TGACACGGGGCTTCCGGGAGAAGTCCAACCCTGACTTCCTTGTCCTAGAA
ATCAACTCCTCGCGCTATGCGTACAACATGTCCCTCAAAGAAGTCAACTT
CAACGTGGTGAAGGCCGTTTTTGGCATGCAGAGCATCGTGGAACCGGCCA
ACGACAACGTACTAGTGGCCATAAACGCAGCCTTTAAACAACTGGGCCCT
GTGGTATCCAACTACATTAAGAGCGAGGATTCCATGATGGATTGTCTCAA
GGCGCTGGAGGATGTGTACGAGGAGAATCATCTAGTGCGGGGGAAGATCT
CGCAGATCGTGCACTATCTGTACGACAAGGACTTTGTGTCCGAGAGTGCC
ATTCAGGCGTGGTACGCGCAGTTGGACGAGGAGGAGCATGCACACCTGCG
CCAAAGCCTCGCCAAGCTCGTGGCTTGGTTGGATCAATCCAGCGAAGAAG
ATGATGACGAGGAGGACGATGACGCAAGCTTTCTAGACCAT
BO09093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-epsilon-RB | 2010 | CG3806-PB | 1..2007 | 17..2023 | 10035 | 100 | Plus |
| eIF2B-epsilon-RA | 2010 | CG3806-PA | 1..2007 | 17..2023 | 10035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-epsilon-RB | 2447 | CG3806-RB | 52..2058 | 17..2023 | 10035 | 100 | Plus |
| eIF2B-epsilon-RA | 2297 | CG3806-RA | 52..2058 | 17..2023 | 10035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1921181..1922472 | 1523..232 | 6460 | 100 | Minus |
| X | 23542271 | X | 1920828..1921115 | 1811..1524 | 1440 | 100 | Minus |
| X | 23542271 | X | 1920555..1920769 | 2023..1809 | 1075 | 100 | Minus |
| X | 23542271 | X | 1922542..1922668 | 235..109 | 635 | 100 | Minus |
| X | 23542271 | X | 1922730..1922823 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:23:35 has no hits.
BO09093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:29 Download gff for
BO09093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RB | 1..2010 | 17..2027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:30 Download gff for
BO09093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RB | 34..2050 | 10..2029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:13 Download gff for
BO09093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 62..2068 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:30 Download gff for
BO09093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RB | 34..2050 | 10..2029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:33 Download gff for
BO09093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-epsilon-RA | 52..2058 | 17..2025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:33 Download gff for
BO09093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1920553..1920767 | 1811..2025 | 99 | <- | Minus |
| X | 1920829..1921115 | 1524..1810 | 100 | <- | Minus |
| X | 1921181..1922469 | 235..1523 | 100 | <- | Minus |
| X | 1922543..1922667 | 110..234 | 100 | <- | Minus |
| X | 1922731..1922823 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:13 Download gff for
BO09093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1814586..1814800 | 1811..2025 | 99 | <- | Minus |
| arm_X | 1814862..1815148 | 1524..1810 | 100 | <- | Minus |
| arm_X | 1815214..1816502 | 235..1523 | 100 | <- | Minus |
| arm_X | 1816576..1816700 | 110..234 | 100 | <- | Minus |
| arm_X | 1816764..1816856 | 17..109 | 100 | | Minus |
BO09093.pep Sequence
Translation from 16 to 2041
> BO09093.pep
MAQFEKEIVQAVLIADNNVWNFKPLSDEGSTALLPLVNVRMLDYALMALN
RSGVEEVFVYTSLYRSSIREHIRAGIATDAAWSFKMTVHVIGGEGCRCFG
DAMRDLDNKALIRGHFILLGADTVTNADLRPVLEQHKRQAKFDKGTAATL
VFKECANNVRTGNEVLIAVDRRNDRLHYHQRLRMHHKENRYQLPLDVFLG
NSCVALHHNLLDPQIAIGSPSMLSLFNDNFDFQTRDDFVRGLLINEELLD
SRIYVALLPAAQYAHKVNNWPAYQLVSRDIINRWAYPFVPDIGLYKLQQE
YVFHKDNIYKSPEAHVSKVALLQNVVIEAGSHVDSGSVISDSVIGANCRI
GKNCRLTNAFLMADVTVMDNCRLEHCVVGEGAIINEDCDVSAGCVLGAKS
VLPAKKTLAKTLITRTPSRRRSDDEVVVELKSIGPHAYIVSDLTTGDPED
SECEDLLPQQPLSIPKMGDLLAPLDEISYCSDFSEDDEDASRAVTPLPDD
TNIFLGEVIDSLTRGFREKSNPDFLVLEINSSRYAYNMSLKEVNFNVVKA
VFGMQSIVEPANDNVLVAINAAFKQLGPVVSNYIKSEDSMMDCLKALEDV
YEENHLVRGKISQIVHYLYDKDFVSESAIQAWYAQLDEEEHAHLRQSLAK
LVAWLDQSSEEDDDEEDDDASFLDH
BO09093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-epsilon-PB | 669 | CG3806-PB | 1..669 | 1..669 | 3466 | 100 | Plus |
| eIF2B-epsilon-PA | 669 | CG3806-PA | 1..669 | 1..669 | 3466 | 100 | Plus |
