Clone Sequence Records
BO09103.3prime Sequence
953 bp (792 high quality bases) assembled on 2006-01-11
> BO09103.3prime
ATGGTCTAGAAAGCTTGCGAATATAGCCAGCACCCCCGTCCACTTAAGGA
GGTAGTAGAAGAACAGTCCCACAATCACCGTCTTGCACACAACGTCTACG
ACTCGTTGGATCTTCATGTGCACGCGCGCAGTGGGCAGATCCTCCTCCTT
TTCCTTGAGGATAAACTTTCGAGCGCCCTTAGCACACTCAATCATGTACT
CCTCCTCGGTGTTCTCCGTGTTCATGTTCATGTTAAAAATCGCCTTGTCT
TCCTCGTTGAGTTTGTTCCAGAGGGAGGCGTAGTTATCAGATCGGAAGCA
CCAGGCATTGAGGGTAAAGAACTGGAGGACGCCCAGACCTGTGGATATCT
TCTCCTGAACTCTCAACATGAATCGCTTCTGACCTAATATCAGCATCAGG
AAGTCCAGGAAGTAAGCGGGCAACCAATGAAACAGAGCCACGTTGAAGTT
GTGGTATAATTGGTTGGTGGTAACGCAAGGGTCCGGGTACCATAGACCCG
CGTTAAATGGGAACTGCTTGTTGATGCGTTTGCTCATCTCCACAACGGTG
CCCATGGTCATCTTCCTGTGGTCCGCATTGGTTATATTATAAACGGGCAC
ATTGGTAGGCCGCTTGGCCTGCTTGTTGAACTCGTAGGGAATGACGATCA
GCCCGTTGATAGCGTAGTCGACGGGAATCACCTCGGCCTTGTTCTGCTGA
TTCACCAGAACGGACCGGATCACGCCCTTGCCGCATCCGATCATCAGGCC
AGTCGGTCCATTCAGGTTGTCCACCCATCCGGGCAACGGCTCGTAGGCAG
CCGGCGACACGATGCTGGGACGTGCGATGATGACGGGCATGGACTCGTAG
TGGTCGCGCACCAGAAGCTCCGCCAGACGCTTTGAGTAGGTGTATGTGTT
GGGGTGCGGCTTTAGCAAATCCGGCGTAATGGCGTCCAGGGTCTTCACGT
CCA
BO09103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PB | 1500 | CG30427-RB | 563..1497 | 953..19 | 4675 | 100 | Minus |
| CG30427-PA | 1500 | CG30427-RA | 563..714 | 953..802 | 760 | 100 | Minus |
| CG30427-PD | 1500 | CG30427-RD | 563..714 | 953..802 | 760 | 100 | Minus |
| CG30427-PC | 1521 | CG30427-RC | 563..707 | 953..809 | 725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 674..1608 | 953..19 | 4675 | 100 | Minus |
| CG30427-RE | 2870 | CG30427-RE | 741..1675 | 953..19 | 4675 | 100 | Minus |
| CG30427-RB | 1806 | CG30427-RB | 741..1675 | 953..19 | 4675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24930723..24931162 | 371..810 | 2200 | 100 | Plus |
| 2R | 25286936 | 2R | 24934058..24934201 | 810..953 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 24930532..24930663 | 239..370 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 24930345..24930473 | 110..238 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 24930198..24930288 | 19..109 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:00:18 has no hits.
BO09103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:52 Download gff for
BO09103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 564..1500 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:15 Download gff for
BO09103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 564..1500 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:38:18 Download gff for
BO09103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 742..1682 | 12..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:51 Download gff for
BO09103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 742..1682 | 12..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:51 Download gff for
BO09103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24930191..24930288 | 12..109 | 95 | <- | Plus |
| 2R | 24930345..24930473 | 110..238 | 100 | <- | Plus |
| 2R | 24930532..24930663 | 239..370 | 100 | <- | Plus |
| 2R | 24930723..24931161 | 371..809 | 100 | <- | Plus |
| 2R | 24934058..24934200 | 810..952 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:38:18 Download gff for
BO09103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20817714..20817811 | 12..109 | 95 | <- | Plus |
| arm_2R | 20817868..20817996 | 110..238 | 100 | <- | Plus |
| arm_2R | 20818055..20818186 | 239..370 | 100 | <- | Plus |
| arm_2R | 20818246..20818684 | 371..809 | 100 | <- | Plus |
| arm_2R | 20821581..20821723 | 810..952 | 100 | | Plus |
BO09103.5prime Sequence
871 bp (835 high quality bases) assembled on 2006-01-10
> BO09103.5prime
GAAGTTATCAGTCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACT
ATAAGGATAAGACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAG
GTTCTGCTGGAGAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGAT
CATCATCTGCCGCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGG
AGATGTTCAAGCTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAG
ATGCTCAAGAGGGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCT
CGGGCTCAGCGGGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTG
TTTTCCACATGGCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCC
ATCGATATGAACTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGA
AATGAAGCAGCTGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACT
GCGACCAGGATGTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCG
GAGGATCTTATGCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGGACGC
CATTACGCCGGATTTGCTAAAGCCGCACCCCAACACATACACCTACTCAA
AGCGTCTGGCGGAGCTTCTGGTGCGCGACCACTACGAGTCCATGCCCGTC
ATCATCGCACGTCCCAGCATCGTGTCGCCGGCTGCCTACGAGCCGTTGCC
CGGATGGGTGGACAACCTGAATGGACCGACTGGCCTGATGATCGGATGCG
GCAAGGGCGTGATCCGGTCCGTTCTGGTGAATCAGCAGAACAGGGCCGAG
GTGATTCCCGTCGACTACGCT
BO09103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PB | 1500 | CG30427-RB | 1..855 | 17..871 | 4250 | 99.8 | Plus |
| CG30427-PA | 1500 | CG30427-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
| CG30427-PD | 1500 | CG30427-RD | 1..714 | 17..730 | 3570 | 100 | Plus |
| CG30427-PC | 1521 | CG30427-RC | 1..707 | 17..723 | 3535 | 100 | Plus |
| CG17562-PA | 1500 | CG17562-RA | 413..444 | 441..472 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 112..966 | 17..871 | 4260 | 99.9 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 179..1033 | 17..871 | 4260 | 99.9 | Plus |
| CG30427-RB | 1806 | CG30427-RB | 179..1033 | 17..871 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24934058..24934483 | 722..297 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 296..17 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24931013..24931162 | 871..722 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:44:38 has no hits.
BO09103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:01:53 Download gff for
BO09103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:16 Download gff for
BO09103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:16 Download gff for
BO09103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 173..1033 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:40 Download gff for
BO09103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 173..1033 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:40 Download gff for
BO09103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24931013..24931161 | 723..871 | 99 | <- | Minus |
| 2R | 24934058..24934483 | 297..722 | 100 | <- | Minus |
| 2R | 24934552..24934835 | 11..296 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:16 Download gff for
BO09103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20818536..20818684 | 723..871 | 99 | <- | Minus |
| arm_2R | 20821581..20822006 | 297..722 | 100 | <- | Minus |
| arm_2R | 20822075..20822358 | 11..296 | 98 | <- | Minus |
BO09103.complete Sequence
1531 bp (1531 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631393
> BO09103.complete
GAAGTTATCAGTCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACT
ATAAGGATAAGACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAG
GTTCTGCTGGAGAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGAT
CATCATCTGCCGCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGG
AGATGTTCAAGCTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAG
ATGCTCAAGAGGGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCT
CGGGCTCAGCGGGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTG
TTTTCCACATGGCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCC
ATCGATATGAACTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGA
AATGAAGCAGCTGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACT
GCGACCAGGATGTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCG
GAGGATCTTATGCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGGACGC
CATTACGCCGGATTTGCTAAAGCCGCACCCCAACACATACACCTACTCAA
AGCGTCTGGCGGAGCTTCTGGTGCGCGACCACTACGAGTCCATGCCCGTC
ATCATCGCACGTCCCAGCATCGTGTCGCCGGCTGCCTACGAGCCGTTGCC
CGGATGGGTGGACAACCTGAATGGACCGACTGGCCTGATGATCGGATGCG
GCAAGGGCGTGATCCGGTCCGTTCTGGTGAATCAGCAGAACAAGGCCGAG
GTGATTCCCGTCGACTACGCTATCAACGGGCTGATCGTCATTCCCTACGA
GTTCAACAAGCAGGCCAAGCGGCCTACCAATGTGCCCGTTTATAATATAA
CCAATGCGGACCACAGGAAGATGACCATGGGCACCGTTGTGGAGATGAGC
AAACGCATCAACAAGCAGTTCCCATTTAACGCGGGTCTATGGTACCCGGA
CCCTTGCGTTACCACCAACCAATTATACCACAACTTCAACGTGGCTCTGT
TTCATTGGTTGCCCGCTTACTTCCTGGACTTCCTGATGCTGATATTAGGT
CAGAAGCGATTCATGTTGAGAGTTCAGGAGAAGATATCCACAGGTCTGGG
CGTCCTCCAGTTCTTTACCCTCAATGCCTGGTGCTTCCGATCTGATAACT
ACGCCTCCCTCTGGAACAAACTCAACGAGGAAGACAAGGCGATTTTTAAC
ATGAACATGAACACGGAGAACACCGAGGAGGAGTACATGATTGAGTGTGC
TAAGGGCGCTCGAAAGTTTATCCTCAAGGAAAAGGAGGAGGATCTGCCCA
CTGCGCGCGTGCACATGAAGATCCAACGAGTCGTAGACGTTGTGTGCAAG
ACGGTGATTGTGGGACTGTTCTTCTACTACCTCCTTAAGTGGACGGGGGT
GCTGGCTATATTCGCAAGCTTTCTAGACCAT
BO09103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1500 | CG30427-PF | 1..1497 | 17..1513 | 7485 | 100 | Plus |
| CG30427-RE | 1500 | CG30427-PE | 1..1497 | 17..1513 | 7485 | 100 | Plus |
| CG30427-RB | 1500 | CG30427-PB | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 112..1608 | 17..1513 | 7485 | 100 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 179..1675 | 17..1513 | 7485 | 100 | Plus |
| CG30427-RB | 1806 | CG30427-RB | 179..1675 | 17..1513 | 7485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24930723..24931162 | 1161..722 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 24934058..24934483 | 722..297 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 296..17 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24930532..24930663 | 1293..1162 | 660 | 100 | Minus |
| 2R | 25286936 | 2R | 24930345..24930473 | 1422..1294 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 24930198..24930288 | 1513..1423 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:29:55 has no hits.
BO09103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:20 Download gff for
BO09103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 1..1500 | 17..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:05 Download gff for
BO09103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 148..1657 | 10..1520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:51:07 Download gff for
BO09103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 179..1675 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:21 Download gff for
BO09103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 148..1657 | 10..1520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:49 Download gff for
BO09103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 179..1675 | 17..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:49 Download gff for
BO09103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24930345..24930473 | 1294..1422 | 100 | <- | Minus |
| 2R | 24930532..24930663 | 1162..1293 | 100 | <- | Minus |
| 2R | 24930195..24930288 | 1423..1515 | 97 | <- | Minus |
| 2R | 24930723..24931161 | 723..1161 | 100 | <- | Minus |
| 2R | 24934058..24934483 | 297..722 | 100 | <- | Minus |
| 2R | 24934552..24934831 | 17..296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:51:07 Download gff for
BO09103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20818055..20818186 | 1162..1293 | 100 | <- | Minus |
| arm_2R | 20817718..20817811 | 1423..1515 | 97 | <- | Minus |
| arm_2R | 20817868..20817996 | 1294..1422 | 100 | <- | Minus |
| arm_2R | 20818246..20818684 | 723..1161 | 100 | <- | Minus |
| arm_2R | 20821581..20822006 | 297..722 | 100 | <- | Minus |
| arm_2R | 20822075..20822354 | 17..296 | 100 | | Minus |
BO09103.pep Sequence
Translation from 16 to 1531
> BO09103.pep
MTVDLSPVQEYYKDKTIFITGASGFMGKVLLEKLLYSCHSLKEVIIICRP
KRGKAPETRLEEMFKLPIFQRIKDERPEMLKRVTIYQGDVTFDQLGLSGE
SLKHVTENTNIVFHMAATLKLEGNLRDAIDMNLLGTRRALNVAKEMKQLE
AFIHLSTAFCNCDQDVMYEKVYEFPHKPEDLMRLAEWMDVKTLDAITPDL
LKPHPNTYTYSKRLAELLVRDHYESMPVIIARPSIVSPAAYEPLPGWVDN
LNGPTGLMIGCGKGVIRSVLVNQQNKAEVIPVDYAINGLIVIPYEFNKQA
KRPTNVPVYNITNADHRKMTMGTVVEMSKRINKQFPFNAGLWYPDPCVTT
NQLYHNFNVALFHWLPAYFLDFLMLILGQKRFMLRVQEKISTGLGVLQFF
TLNAWCFRSDNYASLWNKLNEEDKAIFNMNMNTENTEEEYMIECAKGARK
FILKEKEEDLPTARVHMKIQRVVDVVCKTVIVGLFFYYLLKWTGVLAIFA
SFLDH
BO09103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PF | 499 | CG30427-PF | 1..499 | 1..499 | 2630 | 100 | Plus |
| CG30427-PE | 499 | CG30427-PE | 1..499 | 1..499 | 2630 | 100 | Plus |
| CG30427-PB | 499 | CG30427-PB | 1..499 | 1..499 | 2630 | 100 | Plus |
| CG30427-PD | 499 | CG30427-PD | 1..488 | 1..488 | 2106 | 80.1 | Plus |
| CG30427-PA | 499 | CG30427-PA | 1..488 | 1..488 | 2106 | 80.1 | Plus |
