Clone Sequence Records
BO09107.3prime Sequence
917 bp (808 high quality bases) assembled on 2006-01-11
> BO09107.3prime
ATGGTCTAGAAAGCTTGCATCGTAGTACCAGTCCAAGAAGAGCAGGGAGA
ACGACATGACCAGCAGGAAGAACAGCGACCACACGCGTAGTCCTGCATTT
CGTTGAGTGGCCTGCCGGATTTGCTCGTTGGCGTCCTTGACGTTTTCCGT
GGTGCCCACGACGGCACTAACTATCCTGTCGATATTGTGCTGTTGCATGG
CGACCTTTTCGGTGAAAATGTCCTGCAGTTGGGCAATGTCTACCACGTTC
TTTTCGATCTGCTCCACCTCCTCGGAGACGCCCTGCAGAAAGTTGTAGAT
GTGTACGTTCTCCGCCTCGAAGAGCTGCACATCCTCGGCGCTTAGGGGAT
CGTCATCGTCGGCCTCCTGCTGCTGCTGGAGCTCCTCATCCAGAGCCATC
TTGGAGGATGAGTTGTTCAGATCCGATCTGTTGGCTTTGCTTCGTTTGCG
CGTACGCGGTTTGTGTTGATTGGCCTGATTGGCTTCCTTGCCCTTCTCGC
CATCGTGATCGTCCACCTCGTCGCCTTCCTCGTCTTCATCCCAGTCGCCC
CAGGCGTCGTTATTCCAGTCATTGTCGGCGGACTCGTCGTGGTTGCCATT
TGCTTGTGAAGATGACTTCGTGGCTTCGCTGTCATCGTTGCTGACCTGGC
GCCTGCCCAGCTTGCCACTGTTGCTGCCCGCCGGACGCACTGGTATCTTC
TTTTTGTCCGCCGCCAGCTTGAGCAGCCTATAGGTTTCCAGTTCGTGTTG
CACACGGTACTTCTTTTGGTCCAGATAGATCTGTTCCACGCTGTGCAAAT
AGCTGACCAGCAGGTCCAGCACGGCGTCGATGTGCTGACGCTCCTGCGGC
TTCCGCTTGGCGCTCTTCCAATCGCTGCGCATCTTGGCCAGGTGCTGCGT
GTAAAAAGTGACGAACT
BO09107.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13626-PA | 1188 | Syx18-RA | 287..1185 | 917..19 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx18-RA | 1442 | CG13626-RA | 376..1274 | 917..19 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24624473..24625187 | 203..917 | 3560 | 99.9 | Plus |
3R | 32079331 | 3R | 24623970..24624157 | 19..206 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:58:14 has no hits.
BO09107.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:02 Download gff for
BO09107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-PA | 287..1188 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:25 Download gff for
BO09107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13626-PA | 287..1188 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:40 Download gff for
BO09107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 376..1278 | 14..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:47 Download gff for
BO09107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 376..1278 | 14..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:47 Download gff for
BO09107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24623966..24624155 | 14..204 | 98 | <- | Plus |
3R | 24624475..24625187 | 205..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:40 Download gff for
BO09107.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20449688..20449877 | 14..204 | 98 | <- | Plus |
arm_3R | 20450197..20450909 | 205..917 | 99 | | Plus |
BO09107.5prime Sequence
815 bp (779 high quality bases) assembled on 2006-01-10
> BO09107.5prime
GAAGTTATCAGTCGACATGGACATCACCCAGAGCTTCAAGGCCAGCGTAA
TGACGGTGCGCCTGCAGCGCAAGGCCGAGCTGGCCGGAAAGGCCAAGCCC
GCCACAGTGCCGACAAAAACTGGACCAATTGGCCCAAAGGATGACTTCGC
CAAGCAGGCCAAGGAGGTGTGCAACAAGATCACTTCGCTGCGCAATGTGC
TGATCGAGAACCGCACCGCCTACATGCGCATTGGCCAGCACCTCAAGTCC
GCCGCACACATGACCGACGCGCAGCGGGATCTGATTGATCGCGAGTCGGA
GAAGTTCGTCACCTTTTACACGCAGCACCTGGCCAAGATGCGCAGCGATT
GGAAGAGCGCCAAGCGGAAGCCGCAGGAGCGTCAGCACATCGACGCCGTG
CTGGACCTGCTGGTCAGCTATTTGCACAGCGTGGAACAGATCTATCTGGA
CCAAAAGAAGTACCGTGTGCAACACGAACTGGAAACCTATAGGCTGCTCA
AGCTGGCGGCGGACAAAAAGAAGATACCAGTGCGTCCGGCGGGCAGCAAC
AGTGGCAAGCTGGGCAGGCGCCAGGTCAGCAACGATGACAGCGAAGCCAC
GAAGTCATCTTCACAAGCAAATGGCAACCACGACGAGTCCGCCGACAATG
ACTGGAATAACGACGCCTGGGGCGACTGGGATGAAGACGAGGAAGGCGAC
GAGGTGGACGATCACGATGGCGAGAAGGGCAAGGAAGCCAATCAGGCCAA
TCAACACAAACCGCGTACGCGCAAACGAAGCAAAGCCAACAGATCGGATC
TGAACAACTCATCCT
BO09107.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13626-PA | 1188 | Syx18-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx18-RA | 1442 | CG13626-RA | 90..888 | 17..815 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24624675..24625473 | 815..17 | 3995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:46:47 has no hits.
BO09107.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:03 Download gff for
BO09107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:27 Download gff for
BO09107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13626-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:00 Download gff for
BO09107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 90..888 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:07 Download gff for
BO09107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 90..888 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:07 Download gff for
BO09107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24624675..24625473 | 17..815 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:00 Download gff for
BO09107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20450397..20451195 | 17..815 | 100 | | Minus |
BO09107.complete Sequence
1219 bp (1219 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631394
> BO09107.complete
GAAGTTATCAGTCGACATGGACATCACCCAGAGCTTCAAGGCCAGCGTAA
TGACGGTGCGCCTGCAGCGCAAGGCCGAGCTGGCCGGAAAGGCCAAGCCC
GCCACAGTGCCGACAAAAACTGGACCAATTGGCCCAAAGGATGACTTCGC
CAAGCAGGCCAAGGAGGTGTGCAACAAGATCACTTCGCTGCGCAATGTGC
TGATCGAGAACCGCACCGCCTACATGCGCATTGGCCAGCACCTCAAGTCC
GCCGCACACATGACCGACGCGCAGCGGGATCTGATTGATCGCGAGTCGGA
GAAGTTCGTCACCTTTTACACGCAGCACCTGGCCAAGATGCGCAGCGATT
GGAAGAGCGCCAAGCGGAAGCCGCAGGAGCGTCAGCACATCGACGCCGTG
CTGGACCTGCTGGTCAGCTATTTGCACAGCGTGGAACAGATCTATCTGGA
CCAAAAGAAGTACCGTGTGCAACACGAACTGGAAACCTATAGGCTGCTCA
AGCTGGCGGCGGACAAAAAGAAGATACCAGTGCGTCCGGCGGGCAGCAAC
AGTGGCAAGCTGGGCAGGCGCCAGGTCAGCAACGATGACAGCGAAGCCAC
GAAGTCATCTTCACAAGCAAATGGCAACCACGACGAGTCCGCCGACAATG
ACTGGAATAACGACGCCTGGGGCGACTGGGATGAAGACGAGGAAGGCGAC
GAGGTGGACGATCACGATGGCGAGAAGGGCAAGGAAGCCAATCAGGCCAA
TCAACACAAACCGCGTACGCGCAAACGAAGCAAAGCCAACAGATCGGATC
TGAACAACTCATCCTCCAAGATGGCTCTGGATGAGGAGCTCCAGCAGCAG
CAGGAGGCCGACGATGACGATCCCCTAAGCGCCGAGGATGTGCAGCTCTT
CGAGGCGGAGAACGTACACATCTACAACTTTCTGCAGGGCGTCTCCGAGG
AGGTGGAGCAGATCGAAAAGAACGTGGTAGACATTGCCCAACTGCAGGAC
ATTTTCACCGAAAAGGTCGCCATGCAACAGCACAATATCGACAGGATAGT
TAGTGCCGTCGTGGGCACCACGGAAAACGTCAAGGACGCCAACGAGCAAA
TCCGGCAGGCCACTCAACGAAATGCAGGACTACGCGTGTGGTCGCTGTTC
TTCCTGCTGGTCATGTCGTTCTCCCTGCTCTTCTTGGACTGGTACTACGA
TGCAAGCTTTCTAGACCAT
BO09107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx18-RA | 1188 | CG13626-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx18-RA | 1442 | CG13626-RA | 90..1274 | 17..1201 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24624473..24625473 | 1017..17 | 5005 | 100 | Minus |
3R | 32079331 | 3R | 24623970..24624157 | 1201..1014 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:05:18 has no hits.
BO09107.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:22 Download gff for
BO09107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 1..1188 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:07 Download gff for
BO09107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 108..1296 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:45 Download gff for
BO09107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 90..1274 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:22 Download gff for
BO09107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 108..1296 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:38 Download gff for
BO09107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx18-RA | 90..1274 | 17..1203 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:38 Download gff for
BO09107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24623968..24624155 | 1016..1203 | 98 | <- | Minus |
3R | 24624475..24625473 | 17..1015 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:45 Download gff for
BO09107.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20449690..20449877 | 1016..1203 | 98 | <- | Minus |
arm_3R | 20450197..20451195 | 17..1015 | 100 | | Minus |
BO09107.pep Sequence
Translation from 16 to 1219
> BO09107.pep
MDITQSFKASVMTVRLQRKAELAGKAKPATVPTKTGPIGPKDDFAKQAKE
VCNKITSLRNVLIENRTAYMRIGQHLKSAAHMTDAQRDLIDRESEKFVTF
YTQHLAKMRSDWKSAKRKPQERQHIDAVLDLLVSYLHSVEQIYLDQKKYR
VQHELETYRLLKLAADKKKIPVRPAGSNSGKLGRRQVSNDDSEATKSSSQ
ANGNHDESADNDWNNDAWGDWDEDEEGDEVDDHDGEKGKEANQANQHKPR
TRKRSKANRSDLNNSSSKMALDEELQQQQEADDDDPLSAEDVQLFEAENV
HIYNFLQGVSEEVEQIEKNVVDIAQLQDIFTEKVAMQQHNIDRIVSAVVG
TTENVKDANEQIRQATQRNAGLRVWSLFFLLVMSFSLLFLDWYYDASFLD
H
BO09107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx18-PA | 395 | CG13626-PA | 1..395 | 1..395 | 2034 | 100 | Plus |