Clone Sequence Records
BO09109.3prime Sequence
907 bp (785 high quality bases) assembled on 2006-01-11
> BO09109.3prime
ATGGTCTAGAAAGCTTGCGACACAAGGCTCTACGTAGTTGCCCGGAAACA
GACCGGTAACACCATCCATGACGCCCTCCCACCAGCCGTCGTCGTTTTTC
TTGAGCACGTACAGCACTGAGCTTTCCTGGAAGCTCAGCTCGTCGTCCTT
GTCGGCATAGTAGTCGTAAATGGCTACCACCTTCTCAATGAAGTTCTTGG
GCACCCAGCCGGGTAAGTTCTGATCCTCGGGCACTATGGGCGCCAGCTGC
GGTCCCGTCGATGTGCGTGGTCGTCCGAAGTCTTGATGCTCATCCTCCGG
CGGCGGCGGAGGTGGCAAGGGAGGCGACTGTGAGCCGGGACGAGCGAAGT
TCAAGCTGAAGTGATTCCTGTTGATATTGCGTCCCAAAGTGTGCATGCCA
ATGTGACTCTGCTCGGTCATCTCGTGCTGCGAAACCGTAAGTGGTGAAGG
AGGAGCTGGTGGCATGCTGCTGCGATCGTCGTACGTAGTGGGCGGCGGTG
GTGGCAGCGATTGCATCATGCCCGCGGAGGGCAGGTTTACATGTGTGGCT
ATCTGCTGGCTGGGTGGCATCGGAAGTGCACTGTAGCCAGCAGCTCGTTC
ATTGCCCGCCGCTCCGCCGCCTGTGGTGGTGGTAGTCATCGTTGAAGAAG
CCGTCGACATTCGCTTTGGATGCCCAATAGGATAGTTGGGAGCGTAGTGC
GATGGCACCTGTGGTGGATTGACCACAGGCGGAGTGCGGTACTCCCGCGA
ACTCTTGCCCAGTGTCCCGGTATTGCTGACCGACTTGCCCAGTGTGCCAG
TGTTCCCAGCTCGCGACATCTGCGGCGGAGTTGGGGGCTTCGTGGTTGGC
GGAGGTCCCACCGACGGCGGCAATAAAGATTGCACGGACCCATGGCTGGA
GCCCCGA
BO09109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9749-PA | 1422 | Abi-RA | 531..1419 | 907..19 | 4420 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 600..1488 | 907..19 | 4430 | 99.9 | Minus |
| Abi-RB | 2373 | CG9749-RB | 679..1567 | 907..19 | 4430 | 99.9 | Minus |
| Abi-RA | 2379 | CG9749-RA | 685..1573 | 907..19 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14120847..14121295 | 459..907 | 2230 | 99.8 | Plus |
| 3R | 32079331 | 3R | 14120285..14120474 | 180..369 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 14120068..14120229 | 19..180 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 14120694..14120785 | 367..458 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:25:00 has no hits.
BO09109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:04 Download gff for
BO09109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-PA | 532..1422 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:28 Download gff for
BO09109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9749-PA | 532..1422 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:24 Download gff for
BO09109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 686..1578 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:59 Download gff for
BO09109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 686..1578 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:59 Download gff for
BO09109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14120063..14120228 | 13..179 | 98 | <- | Plus |
| 3R | 14120285..14120472 | 180..367 | 100 | <- | Plus |
| 3R | 14120695..14120785 | 368..458 | 100 | <- | Plus |
| 3R | 14120847..14121294 | 459..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:24 Download gff for
BO09109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9945785..9945950 | 13..179 | 98 | <- | Plus |
| arm_3R | 9946007..9946194 | 180..367 | 100 | <- | Plus |
| arm_3R | 9946417..9946507 | 368..458 | 100 | <- | Plus |
| arm_3R | 9946569..9947016 | 459..906 | 99 | | Plus |
BO09109.5prime Sequence
926 bp (785 high quality bases) assembled on 2006-01-10
> BO09109.5prime
GAAGTTATCAGTCGACATGTTGACCGAAACCCCCATGGCCAGCGAGAACA
TCATGGACGAACTAGCCTCTCTGATACGCACCGAGATCCCCGATGGCCGC
CAGAGTCTGCGGGACAGCTACACGAACCTGGAGCGGGTGGCCGACTACTG
CGAGGACACCTACTACCGCGCGGACAACAAGAAGGCGGCCCTGGAGGCCA
CCAAGAACTACACCACCCAGTCGCTGGCCAGCGTGGCCTACCAGATTAAC
ACGCTCGCCTATAGCTACATGCAGCTCCTCGAGCTTCAGGCCCAGCAGCT
CGGCGAGATGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCC
ACAAGGAGAAGGTGGCCAGGAGAGAGATTGGCGTGCTTACGGCTAACAAG
GTGAGCTCGCGCCAGTTTAAGATCGTGGCGCCCATCAATCCGGAGAAGCC
CATCAAGTATGTGCGCAAGCCCATCGACTACTCGATGTTGGACGAGATTG
GCCACGGCATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACATCGG
GGCTCCAGCCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACC
TCCGCCAACCACGAAGCCCCCAACTCCGCCGCAGATGTCGCGAGCTGGGA
ACACTGGCACACTGGGCAAGTCGGTCAGCAATACCGGGACACTGGGCAAG
AGTTCGCGGGAGTACCGCACTCCGCCTGTGGTCAATCCACCACAGGTGCC
ATCGCACTACGCTCCCAACTATCCTATTGGGCATCCAAAGCGAATGTCGA
CGGCTTCTTTCACGATGACTACCACCACCACAGGCGGCGGAGCGGCGGGC
AATGAACGAGCTGCTGGCTACAGTGCACTTTCGATGCCACCCAGCCAGCA
GATAGCCACACATGTAAACCTGCCCC
BO09109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9749-PA | 1422 | Abi-RA | 1..909 | 17..925 | 4470 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 69..978 | 16..925 | 4505 | 99.7 | Plus |
| Abi-RE | 2376 | CG9749-RE | 154..1063 | 16..925 | 4505 | 99.7 | Plus |
| Abi-RB | 2373 | CG9749-RB | 148..1057 | 16..925 | 4505 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14120917..14121471 | 925..371 | 2730 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14121746..14122102 | 372..16 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:41:59 has no hits.
BO09109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:05 Download gff for
BO09109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:30 Download gff for
BO09109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9749-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:49:16 Download gff for
BO09109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1057 | 9..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:48 Download gff for
BO09109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1057 | 9..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:48 Download gff for
BO09109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14120915..14121469 | 373..926 | 99 | <- | Minus |
| 3R | 14121746..14122106 | 9..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:49:16 Download gff for
BO09109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9946637..9947191 | 373..926 | 99 | <- | Minus |
| arm_3R | 9947468..9947828 | 9..372 | 98 | | Minus |
BO09109.complete Sequence
1453 bp (1453 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631395
> BO09109.complete
GAAGTTATCAGTCGACATGTTGACCGAAACCCCCATGGCCAGCGAGAACA
TCATGGACGAACTAGCCTCTCTGATACGCACCGAGATCCCCGATGGCCGC
CAGAGTCTGCGGGACAGCTACACGAACCTGGAGCGGGTGGCCGACTACTG
CGAGGACACCTACTACCGCGCGGACAACAAGAAGGCGGCCCTGGAGGCCA
CCAAGAACTACACCACCCAGTCGCTGGCCAGCGTGGCCTACCAGATTAAC
ACGCTCGCCTATAGCTACATGCAGCTCCTCGAGCTTCAGGCCCAGCAGCT
CGGCGAGATGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCC
ACAAGGAGAAGGTGGCCAGGAGAGAGATTGGCGTGCTTACGGCTAACAAG
GTGAGCTCGCGCCAGTTTAAGATCGTGGCGCCCATCAATCCGGAGAAGCC
CATCAAGTATGTGCGCAAGCCCATCGACTACTCGATGTTGGACGAGATTG
GCCACGGCATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACATCGG
GGCTCCAGCCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACC
TCCGCCAACCACGAAGCCCCCAACTCCGCCGCAGATGTCGCGAGCTGGGA
ACACTGGCACACTGGGCAAGTCGGTCAGCAATACCGGGACACTGGGCAAG
AGTTCGCGGGAGTACCGCACTCCGCCTGTGGTCAATCCACCACAGGTGCC
ATCGCACTACGCTCCCAACTATCCTATTGGGCATCCAAAGCGAATGTCGA
CGGCTTCTTCAACGATGACTACCACCACCACAGGCGGCGGAGCGGCGGGC
AATGAACGAGCTGCTGGCTACAGTGCACTTCCGATGCCACCCAGCCAGCA
GATAGCCACACATGTAAACCTGCCCTCCGCGGGCATGATGCAATCGCTGC
CACCACCGCCGCCCACTACGTACGACGATCGCAGCAGCATGCCACCAGCT
CCTCCTTCACCACTTACGGTTTCGCAGCACGAGATGACCGAGCAGAGTCA
CATTGGCATGCACACTTTGGGACGCAATATCAACAGGAATCACTTCAGCT
TGAACTTCGCTCGTCCCGGCTCACAGTCGCCTCCCTTGCCACCTCCGCCG
CCGCCGGAGGATGAGCATCAAGACTTCGGACGACCACGCACATCGACGGG
ACCGCAGCTGGCGCCCATAGTGCCCGAGGATCAGAACTTACCCGGCTGGG
TGCCCAAGAACTTCATTGAGAAGGTGGTAGCCATTTACGACTACTATGCC
GACAAGGACGACGAGCTGAGCTTCCAGGAAAGCTCAGTGCTGTACGTGCT
CAAGAAAAACGACGACGGCTGGTGGGAGGGCGTCATGGATGGTGTTACCG
GTCTGTTTCCGGGCAACTACGTAGAGCCTTGTGTCGCAAGCTTTCTAGAC
CAT
BO09109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 1422 | CG9749-PF | 1..1419 | 17..1435 | 7095 | 100 | Plus |
| Abi-RB | 1422 | CG9749-PB | 1..1419 | 17..1435 | 7095 | 100 | Plus |
| Abi-RA | 1422 | CG9749-PA | 1..1419 | 17..1435 | 7095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 69..1488 | 16..1435 | 7100 | 100 | Plus |
| Abi-RB | 2373 | CG9749-RB | 148..1567 | 16..1435 | 7100 | 100 | Plus |
| Abi-RA | 2379 | CG9749-RA | 154..1573 | 16..1435 | 7100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14120847..14121471 | 995..371 | 3125 | 100 | Minus |
| 3R | 32079331 | 3R | 14121746..14122102 | 372..16 | 1785 | 100 | Minus |
| 3R | 32079331 | 3R | 14120285..14120474 | 1274..1085 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 14120068..14120229 | 1435..1274 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 14120694..14120785 | 1087..996 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:59:08 has no hits.
BO09109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:23 Download gff for
BO09109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 1..1422 | 17..1439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:09 Download gff for
BO09109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1572 | 9..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:29 Download gff for
BO09109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 160..1573 | 22..1437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:23 Download gff for
BO09109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..1572 | 9..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:46 Download gff for
BO09109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RA | 160..1573 | 22..1437 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:46 Download gff for
BO09109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14120066..14120228 | 1275..1437 | 98 | <- | Minus |
| 3R | 14120285..14120472 | 1087..1274 | 100 | <- | Minus |
| 3R | 14120695..14120785 | 996..1086 | 100 | <- | Minus |
| 3R | 14120847..14121469 | 373..995 | 100 | <- | Minus |
| 3R | 14121746..14122096 | 22..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:29 Download gff for
BO09109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9945788..9945950 | 1275..1437 | 98 | <- | Minus |
| arm_3R | 9946007..9946194 | 1087..1274 | 100 | <- | Minus |
| arm_3R | 9946417..9946507 | 996..1086 | 100 | <- | Minus |
| arm_3R | 9946569..9947191 | 373..995 | 100 | <- | Minus |
| arm_3R | 9947468..9947818 | 22..372 | 100 | | Minus |
BO09109.pep Sequence
Translation from 16 to 1453
> BO09109.pep
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCVASFLDH
BO09109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-PF | 473 | CG9749-PF | 1..473 | 1..473 | 2513 | 100 | Plus |
| Abi-PB | 473 | CG9749-PB | 1..473 | 1..473 | 2513 | 100 | Plus |
| Abi-PA | 473 | CG9749-PA | 1..473 | 1..473 | 2513 | 100 | Plus |
| Abi-PD | 477 | CG9749-PD | 1..477 | 1..473 | 2498 | 99.2 | Plus |
| Abi-PE | 472 | CG9749-PE | 1..472 | 1..473 | 2497 | 99.8 | Plus |
