Clone Sequence Records
BO09112.3prime Sequence
905 bp (837 high quality bases) assembled on 2006-01-11
> BO09112.3prime
ATGGTCTAGAAAGCTTGCGAACAGACCCTTCTTTTTCTTCTCCTTCTTGC
CATCCACATTGTCCGTGCTGCTGTTGGCCCCCAGGCTGCGTCGCTTGAGC
TCCTCGAGCGTCACGTGGTTGACATCCTCCCACTCCTTCTTCTCGCGCTC
GAACTCGCGTCTCTTCTCCTCCAGCTCCCGGATCTGCAGCTCCAGCGCCT
TCTTGCGCTCCTCGTGGCGCCGCGCCAGCTCCAGCTCCGAGTCCCTGAGC
TTCTGCATCTTCTCCTTGACCTTCATGTCAAACACCTGCTCCATCTCGGC
CTCCATCTTCTTCATCTTCTGCTCGTGCTCCCGCTTTTCCTCCTCCATCT
GGGTGAGTGGGTTCTTGTTGGACAGCCTGGCCTTGCCGTCCACCAATCCC
AGCTCGGATAGCTTCCGGCAGCGGTAGTTCTCGTAGTGGACGTTGTTCGT
CACGTCCTTGAGGTCCTGAAGGTGCGTGCGTATGACCATGTTGCGCAGCG
CTATAAAGTCGCAATGCGTCAGGTTCTCCACCTCCACCAGGCCCCAGGGA
TAACGCCTACCCCGGACCTTCTTTCCGTCCTGCTCGATGATGGTGTTGGC
ACCCACCACCGCGAATGGCACTCGGCTGCGCAAATTCTGCGTGGTTTTGG
CCTCCTCGGCCGCATCCTCCAGCGTGGCGGGGAAGTCGTAGATCTTGATC
TTGTGCTGGGCGATCTCGTTAAGGATCTGCTTCTTAAATAGATGCACCTC
GTCGGGCGTCATGGTGTCCGCCTTGGCGATCACCGGCACCAGATTTACCT
TGTCCGACAGGCTCTGCATGCAGGCAATGTCCAGCGGCAGGAGTCCGTGT
CCCGATGGCGCTATGAAGTAGAGGCAGCAGTGCACCCGGCTGTCGGAAAT
GGTTT
BO09112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8705-PB | 1620 | pnut-RB | 731..1617 | 905..19 | 4410 | 99.8 | Minus |
| CG8705-PA | 1620 | pnut-RA | 731..1617 | 905..19 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 935..1821 | 905..19 | 4420 | 99.9 | Minus |
| pnut-RB | 3027 | CG8705-RB | 1517..2403 | 905..19 | 4420 | 99.9 | Minus |
| Sep4-RG | 2433 | CG9699-RG | 1084..1260 | 598..422 | 195 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238787..8239673 | 905..19 | 4420 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:44:01 has no hits.
BO09112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:10 Download gff for
BO09112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-PA | 731..1620 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:37 Download gff for
BO09112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8705-PA | 731..1620 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:55 Download gff for
BO09112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 1517..2407 | 14..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:49 Download gff for
BO09112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 1517..2407 | 14..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:49 Download gff for
BO09112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238787..8239677 | 14..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:55 Download gff for
BO09112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4126292..4127182 | 14..905 | 99 | | Minus |
BO09112.5prime Sequence
898 bp (835 high quality bases) assembled on 2006-01-10
> BO09112.5prime
GAAGTTATCAGTCGACATGAATAGTCCTCGCTCGAACGCGGTTAATGGCG
GCAGCGGCGGCGCCATCTCCGCTCTGCCCAGCACTCTGGCCCAACTGGCT
CTGCGCGACAAGCAGCAGGCTGCGTCGGCATCGGCGTCCTCTGCCACGAA
CGGCAGCAGCGGCAGCGAGTCCTTGGTGGGCGTCGGTGGACGACCGCCCA
ATCAGCCGCCCAGTGTGCCAGTGGCCGCCAGTGGCAAGCTGGACACCAGC
GGCGGAGGCGCCTCCAACGGCGACTCGAACAAACTGACCCACGATCTGCA
GGAGAAGGAGCACCAGCAGGCGCAGAAGCCACAGAAGCCACCGCTCCCGG
TGCGCCAGAAGCCCATGGAGATCGCCGGCTATGTGGGCTTCGCCAACCTG
CCCAATCAGGTCTATCGCAAGGCCGTCAAGCGGGGATTCGAGTTCACTCT
GATGGTGGTGGGCGCCAGTGGGCTGGGCAAGTCGACGCTGATCAACTCCA
TGTTCCTGTCGGACATCTACAACGCGGAACAGTATCCGGGCCCCTCGCTG
CGCAAAAAGAAGACCGTGGCCGTGGAGGCCACCAAAGTAATGCTCAAGGA
GAACGGCGTCAATCTGACACTCACGGTGGTGGACACACCCGGATTCGGTG
ATGCCGTTGACAACAGCAACTGCTGGGTGCCCATACTGGAGTACGTGGAT
AGCAAGTACGAGGAGTACCTGACAGCCGAGTCGCGGGTGTACCGAAAAAC
CATTTCGGACAGCCGGGTGCACTGCTGCCTCTACTTCATAGCGCCATCGG
GACACGGACTCCTGCCGCTGGACATTGCCTGCATGCAGAGCCTGTCCGAC
AAGGTAAATCTGGTGCCGGTGATCGCCAAGGCGGACACCATGACGCCC
BO09112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8705-PB | 1620 | pnut-RB | 1..882 | 17..898 | 4385 | 99.8 | Plus |
| CG8705-PA | 1620 | pnut-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
| CG1403-PB | 498 | Sep1-RB | 38..74 | 375..411 | 160 | 97.2 | Plus |
| CG1403-PA | 1086 | Sep1-RA | 38..74 | 375..411 | 160 | 97.2 | Plus |
| CG1403-PB | 498 | Sep1-RB | 286..318 | 623..655 | 140 | 96.9 | Plus |
| CG1403-PA | 1086 | Sep1-RA | 286..318 | 623..655 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 205..1086 | 17..898 | 4395 | 99.9 | Plus |
| pnut-RB | 3027 | CG8705-RB | 787..1668 | 17..898 | 4395 | 99.9 | Plus |
| Sep1-RA | 2026 | CG1403-RA | 128..248 | 375..495 | 325 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238057..8238938 | 17..898 | 4395 | 99.9 | Plus |
| X | 23542271 | X | 21359531..21359651 | 375..495 | 320 | 84.3 | Plus |
| X | 23542271 | X | 21359819..21359916 | 597..694 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:44:15 has no hits.
BO09112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:11 Download gff for
BO09112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:38 Download gff for
BO09112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8705-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:14 Download gff for
BO09112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 783..1668 | 12..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:36 Download gff for
BO09112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 783..1668 | 12..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:36 Download gff for
BO09112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238053..8238938 | 12..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:14 Download gff for
BO09112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4125558..4126443 | 12..898 | 99 | | Plus |
BO09112.complete Sequence
1651 bp (1651 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631396
> BO09112.complete
GAAGTTATCAGTCGACATGAATAGTCCTCGCTCGAACGCGGTTAATGGCG
GCAGCGGCGGCGCCATCTCCGCTCTGCCCAGCACTCTGGCCCAACTGGCT
CTGCGCGACAAGCAGCAGGCTGCGTCGGCATCGGCGTCCTCTGCCACGAA
CGGCAGCAGCGGCAGCGAGTCCTTGGTGGGCGTCGGTGGACGACCGCCCA
ATCAGCCGCCCAGTGTGCCAGTGGCCGCCAGTGGCAAGCTGGACACCAGC
GGCGGAGGCGCCTCCAACGGCGACTCGAACAAACTGACCCACGATCTGCA
GGAGAAGGAGCACCAGCAGGCGCAGAAGCCACAGAAGCCACCGCTCCCGG
TGCGCCAGAAGCCCATGGAGATCGCCGGCTATGTGGGCTTCGCCAACCTG
CCCAATCAGGTCTATCGCAAGGCCGTCAAGCGGGGATTCGAGTTCACTCT
GATGGTGGTGGGCGCCAGTGGGCTGGGCAAGTCGACGCTGATCAACTCCA
TGTTCCTGTCGGACATCTACAACGCGGAACAGTATCCGGGCCCCTCGCTG
CGCAAAAAGAAGACCGTGGCCGTGGAGGCCACCAAAGTAATGCTCAAGGA
GAACGGCGTCAATCTGACACTCACGGTGGTGGACACACCCGGATTCGGTG
ATGCCGTTGACAACAGCAACTGCTGGGTGCCCATACTGGAGTACGTGGAT
AGCAAGTACGAGGAGTACCTGACAGCCGAGTCGCGGGTGTACCGAAAAAC
CATTTCGGACAGCCGGGTGCACTGCTGCCTCTACTTCATAGCGCCATCGG
GACACGGACTCCTGCCGCTGGACATTGCCTGCATGCAGAGCCTGTCGGAC
AAGGTAAATCTGGTGCCGGTGATCGCCAAGGCGGACACCATGACGCCCGA
CGAGGTGCATCTATTTAAGAAGCAGATCCTTAACGAGATCGCCCAGCACA
AGATCAAGATCTACGACTTCCCCGCCACGCTGGAGGATGCGGCCGAGGAG
GCCAAAACCACGCAGAATTTGCGCAGCCGAGTGCCATTCGCGGTGGTGGG
TGCCAACACCATCATCGAGCAGGACGGAAAGAAGGTCCGGGGTAGGCGTT
ATCCCTGGGGCCTGGTGGAGGTGGAGAACCTGACGCATTGCGACTTTATA
GCGCTGCGCAACATGGTCATACGCACGCACCTTCAGGACCTCAAGGACGT
GACGAACAACGTCCACTACGAGAACTACCGCTGCCGGAAGCTATCCGAGC
TGGGATTGGTGGACGGCAAGGCCAGGCTGTCCAACAAGAACCCACTCACC
CAGATGGAGGAGGAAAAGCGGGAGCACGAGCAGAAGATGAAGAAGATGGA
GGCCGAGATGGAGCAGGTGTTTGACATGAAGGTCAAGGAGAAGATGCAGA
AGCTCAGGGACTCGGAGCTGGAGCTGGCGCGGCGCCACGAGGAGCGCAAG
AAGGCGCTGGAGCTGCAGATCCGGGAGCTGGAGGAGAAGAGACGCGAGTT
CGAGCGCGAGAAGAAGGAGTGGGAGGATGTCAACCACGTGACGCTCGAGG
AGCTCAAGCGACGCAGCCTGGGGGCCAACAGCAGCACGGACAATGTGGAT
GGCAAGAAGGAGAAGAAAAAGAAGGGTCTGTTCGCAAGCTTTCTAGACCA
T
BO09112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 1620 | CG8705-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
| pnut-RB | 1620 | CG8705-PB | 1..1617 | 17..1633 | 8085 | 100 | Plus |
| Sep1-RA | 1086 | CG1403-PA | 38..158 | 375..495 | 320 | 84.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-RA | 2445 | CG8705-RA | 205..1821 | 17..1633 | 8085 | 100 | Plus |
| pnut-RB | 3027 | CG8705-RB | 787..2403 | 17..1633 | 8085 | 100 | Plus |
| Sep1-RA | 2026 | CG1403-RA | 128..248 | 375..495 | 320 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8238057..8239673 | 17..1633 | 8085 | 100 | Plus |
| X | 23542271 | X | 21359531..21359651 | 375..495 | 320 | 84.3 | Plus |
| X | 23542271 | X | 21359819..21359916 | 597..694 | 205 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:58:46 has no hits.
BO09112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:16 Download gff for
BO09112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RA | 1..1620 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:37 Download gff for
BO09112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RA | 195..1819 | 12..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:44 Download gff for
BO09112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 787..2403 | 17..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:16 Download gff for
BO09112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RA | 195..1819 | 12..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:19 Download gff for
BO09112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnut-RB | 787..2403 | 17..1635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:19 Download gff for
BO09112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8238057..8239673 | 17..1635 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:44 Download gff for
BO09112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4125562..4127178 | 17..1635 | 99 | | Plus |
BO09112.pep Sequence
Translation from 16 to 1651
> BO09112.pep
MNSPRSNAVNGGSGGAISALPSTLAQLALRDKQQAASASASSATNGSSGS
ESLVGVGGRPPNQPPSVPVAASGKLDTSGGGASNGDSNKLTHDLQEKEHQ
QAQKPQKPPLPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVVGA
SGLGKSTLINSMFLSDIYNAEQYPGPSLRKKKTVAVEATKVMLKENGVNL
TLTVVDTPGFGDAVDNSNCWVPILEYVDSKYEEYLTAESRVYRKTISDSR
VHCCLYFIAPSGHGLLPLDIACMQSLSDKVNLVPVIAKADTMTPDEVHLF
KKQILNEIAQHKIKIYDFPATLEDAAEEAKTTQNLRSRVPFAVVGANTII
EQDGKKVRGRRYPWGLVEVENLTHCDFIALRNMVIRTHLQDLKDVTNNVH
YENYRCRKLSELGLVDGKARLSNKNPLTQMEEEKREHEQKMKKMEAEMEQ
VFDMKVKEKMQKLRDSELELARRHEERKKALELQIRELEEKRREFEREKK
EWEDVNHVTLEELKRRSLGANSSTDNVDGKKEKKKKGLFASFLDH
BO09112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnut-PA | 539 | CG8705-PA | 1..539 | 1..539 | 2765 | 100 | Plus |
| pnut-PB | 539 | CG8705-PB | 1..539 | 1..539 | 2765 | 100 | Plus |
| Sep1-PA | 361 | CG1403-PA | 10..353 | 117..451 | 906 | 53 | Plus |
| Sep4-PC | 427 | CG9699-PC | 11..420 | 60..458 | 826 | 42.2 | Plus |
| Sep4-PE | 427 | CG9699-PE | 11..420 | 60..458 | 826 | 42.2 | Plus |
