Clone Sequence Records
BO09113.3prime Sequence
962 bp (809 high quality bases) assembled on 2006-01-11
> BO09113.3prime
ATGGTCTAGAAAGCTTGCCTCCAAATTTCGCACCTCGAATCGTTTGTACG
TGTAGTTGATAAAGACCCAGTCCTTCGCAATCTCACCGCCCTGCGGTATG
GGCGCCGATGGTATCTCCAGCGACACATCGGGAAACTCGTCGAAGTTGGA
CGTATCGTCGATTGAGCGCACCTCAACGGGTATGGCCGCGGGACGCTCAC
GTATGTGCTCCCAGTCAACTCCCCGGAAGAACGGCACGGACTTCAGATCC
TCCAGACCGCGCTGGGAACCCAGCCGGCGATCGGCCTCGCAACAGAAGTT
GATGATCGTCTCCTTGGCCTCCTCCGATATGGGGATCTCTGGGGGAAATA
TCAGCGTCTCGCGCCAGTTCATCACCTTGCGGTAGGTGTCCTGGGGATTG
TCCGAGCAGAATGGAGGATAGCCCATCAGCATTTCGTACATGATGACTCC
CAGGGACCACCAGTCGCAGGCGGGTCCGTAGCCAGTCTGCAGAAATACTT
CGGGTGCAATATAGTCCGGCGTTCCCACGGTGCTGTAGGCGAGGGCGCGT
CGATTTCGCTTCCACGACTCGGCACGTCGCTTGGAGTCCATCGGACTGGC
GCACGTGCCTATAAAATCGGATGGTTTCGCCTGCGACAAGTCCCGATAAA
AGTCTGTTCGATGCGACTTCTTTAAGCCAGTGCACAGTCCGAAGTCGGAG
AGCTTCAGATGCCCTCGCGCGTCCAGCAGCAAGTTATCGGGCTTGATATC
CCTGTGTATGAAACCGAGTTTGTGAATAGAATCGATCGCCAATGCCGTCT
CACTGATATAGAACTGTGTGCCCTCCTCGGATAGCGTGTCCTTCTTCATC
AAAAGCGTCATCATATCACCACCAGGCAAGAACTCCATTATCAAATATAA
ATTGACGGGATCCTGGAAACTGTAGTACATCTTCACCACCCACTGATGAT
CGGCCTCGACCA
BO09113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8637-PA | 1380 | trc-RA | 434..1377 | 962..19 | 4695 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trc-RA | 2277 | CG8637-RA | 646..1589 | 962..19 | 4705 | 99.9 | Minus |
| trc-RB | 2816 | CG8637-RB | 646..1601 | 962..19 | 4575 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19832228..19832715 | 111..598 | 2425 | 99.8 | Plus |
| 3L | 28110227 | 3L | 19832934..19833146 | 703..915 | 1065 | 100 | Plus |
| 3L | 28110227 | 3L | 19832770..19832878 | 596..704 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 19832079..19832170 | 19..110 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 19833609..19833659 | 912..962 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:31:04 has no hits.
BO09113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:12 Download gff for
BO09113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-PA | 435..1380 | 16..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:39 Download gff for
BO09113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8637-PA | 435..1380 | 16..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:37:57 Download gff for
BO09113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 647..1593 | 15..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:11 Download gff for
BO09113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 647..1593 | 15..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:11 Download gff for
BO09113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19833610..19833658 | 913..961 | 100 | | Plus |
| 3L | 19832228..19832712 | 111..595 | 99 | <- | Plus |
| 3L | 19832770..19832876 | 596..702 | 100 | <- | Plus |
| 3L | 19832075..19832170 | 15..110 | 97 | <- | Plus |
| 3L | 19832934..19833143 | 703..912 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:37:57 Download gff for
BO09113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19825175..19825270 | 15..110 | 97 | <- | Plus |
| arm_3L | 19825328..19825812 | 111..595 | 99 | <- | Plus |
| arm_3L | 19825870..19825976 | 596..702 | 100 | <- | Plus |
| arm_3L | 19826034..19826243 | 703..912 | 100 | <- | Plus |
| arm_3L | 19826710..19826758 | 913..961 | 100 | | Plus |
BO09113.5prime Sequence
939 bp (847 high quality bases) assembled on 2006-01-10
> BO09113.5prime
GAAGTTATCAGTCGACATGATGAGCAGCAGAACGCAGGACGCGGACGGTG
CCTCGATCAGATTCAGCGACCACACACTGGACAAGGCCACCAAGGCCAAG
GTGACGTTGGAGAACTACTACAGCAACCTGGTGACGCAGTATGGCGAGCG
AAAGCAGCGCCTCGCAAAGCTGGAGGCTCAGCTGAAGGACGAGAGCTTGT
CGGAGGCGCAGCGCCAGGAGAAGCGTCTGCAGCATGCCCAGAAGGAGACG
GAGTATCTCCGGCTGAAGCGATTGCGCCTCGGTGTGGAGGACTTTGAGGC
CCTCAAAGTCATCGGACGCGGCGCGTTCGGTGAAGTGCGTTTGGTGCAGA
AAAAGGACACGGGACATGTGTACGCCATGAAGGTGCTGCGCAAAGCGGAC
ATGCTGGAAAAGGAGCAGGTGGCACACGTACGAGCCGAGCGCGATGTCCT
GGTCGAGGCCGATCATCAGTGGGTGGTGAAGATGTACTACAGTTTCCAGG
ATCCCGTCAATTTATATTTGATAATGGAGTTCTTGCCTGGTGGTGATATG
ATGACGCTTTTGATGAAGAAGGACACGCTATCCGAGGAGGGCACACAGTT
CTATATCAGTGAGACGGCATTGGCGATCGATTCTATTCACAAACTCGGTT
TCATACACAGGGATATCAAGCCCGATAACTTGCTGCTGGACGCGCGAGGG
CATCTGAAGCTCTCCGACTTCGGACTGTGCACTGGCTTAAAGAAGTCGCA
TCGAACAGACTTTTATCGGGACTTGTCGCANGCGAAACCATCCGATTTTA
TAGGCACGTGCGCCAGTCCGATGGACTCCAAGCGACGTGCCGAGTCGTGG
AAGCGAAATCGACGCGCCCTCGCCTACAGCACCGTGGGAACGCCGGACTA
TATTGCACCCGAAGTATTTCTGCAGACTGGCTACGGACC
BO09113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8637-PA | 1380 | trc-RA | 1..923 | 17..939 | 4596 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trc-RA | 2277 | CG8637-RA | 213..1135 | 17..939 | 4604 | 99.9 | Plus |
| trc-RB | 2816 | CG8637-RB | 213..1147 | 17..939 | 4474 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19833609..19834092 | 500..17 | 2420 | 100 | Minus |
| 3L | 28110227 | 3L | 19832934..19833146 | 709..497 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 19832590..19832715 | 939..814 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 19832770..19832878 | 816..708 | 534 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:37:26 has no hits.
BO09113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:13 Download gff for
BO09113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:40 Download gff for
BO09113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8637-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:16:06 Download gff for
BO09113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 205..1135 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:02 Download gff for
BO09113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 205..1135 | 9..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:02 Download gff for
BO09113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19832590..19832712 | 817..939 | 100 | <- | Minus |
| 3L | 19832770..19832876 | 710..816 | 99 | <- | Minus |
| 3L | 19832934..19833143 | 500..709 | 100 | <- | Minus |
| 3L | 19833610..19834100 | 9..499 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:16:06 Download gff for
BO09113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19825690..19825812 | 817..939 | 100 | <- | Minus |
| arm_3L | 19825870..19825976 | 710..816 | 99 | <- | Minus |
| arm_3L | 19826034..19826243 | 500..709 | 100 | <- | Minus |
| arm_3L | 19826710..19827200 | 9..499 | 99 | | Minus |
BO09113.complete Sequence
1411 bp (1411 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631397
> BO09113.complete
GAAGTTATCAGTCGACATGATGAGCAGCAGAACGCAGGACGCGGACGGTG
CCTCGATCAGATTCAGCGACCACACACTGGACAAGGCCACCAAGGCCAAG
GTGACGTTGGAGAACTACTACAGCAACCTGGTGACGCAGTATGGCGAGCG
AAAGCAGCGCCTCGCAAAGCTGGAGGCTCAGCTGAAGGACGAGAGCTTGT
CGGAGGCGCAGCGCCAGGAGAAGCGTCTGCAGCATGCCCAGAAGGAGACG
GAGTATCTCCGGCTGAAGCGATTGCGCCTCGGTGTGGAGGACTTTGAGGC
CCTCAAAGTCATCGGACGCGGCGCGTTCGGTGAAGTGCGTTTGGTGCAGA
AAAAGGACACGGGACATGTGTACGCCATGAAGGTGCTGCGCAAAGCGGAC
ATGCTGGAAAAGGAGCAGGTGGCACACGTACGAGCCGAGCGCGATGTCCT
GGTCGAGGCCGATCATCAGTGGGTGGTGAAGATGTACTACAGTTTCCAGG
ATCCCGTCAATTTATATTTGATAATGGAGTTCTTGCCTGGTGGTGATATG
ATGACGCTTTTGATGAAGAAGGACACGCTATCCGAGGAGGGCACACAGTT
CTATATCAGTGAGACGGCATTGGCGATCGATTCTATTCACAAACTCGGTT
TCATACACAGGGATATCAAGCCCGATAACTTGCTGCTGGACGCGCGAGGG
CATCTGAAGCTCTCCGACTTCGGACTGTGCACTGGCTTAAAGAAGTCGCA
TCGAACAGACTTTTATCGGGACTTGTCGCAGGCGAAACCATCCGATTTTA
TAGGCACGTGCGCCAGTCCGATGGACTCCAAGCGACGTGCCGAGTCGTGG
AAGCGAAATCGACGCGCCCTCGCCTACAGCACCGTGGGAACGCCGGACTA
TATTGCACCCGAAGTATTTCTGCAGACTGGCTACGGACCCGCCTGCGACT
GGTGGTCCCTGGGAGTCATCATGTACGAAATGCTGATGGGCTATCCTCCA
TTCTGCTCGGACAATCCCCAGGACACCTACCGCAAGGTGATGAACTGGCG
CGAGACGCTGATATTTCCCCCAGAGATCCCCATATCGGAGGAGGCCAAGG
AGACGATCATCAACTTCTGTTGCGAGGCCGATCGCCGGCTGGGTTCCCAG
CGCGGTCTGGAGGATCTGAAGTCCGTGCCGTTCTTCCGGGGAGTTGACTG
GGAGCACATACGTGAGCGTCCCGCGGCCATACCCGTTGAGGTGCGCTCAA
TCGACGATACGTCCAACTTCGACGAGTTTCCCGATGTGTCGCTGGAGATA
CCATCGGCGCCCATACCGCAGGGCGGTGAGATTGCGAAGGACTGGGTCTT
TATCAACTACACGTACAAACGATTCGAGGTGCGAAATTTGGAGGCAAGCT
TTCTAGACCAT
BO09113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trc-RA | 1380 | CG8637-PA | 1..1377 | 17..1393 | 6870 | 99.9 | Plus |
| trc-RB | 1392 | CG8637-PB | 1..1389 | 17..1393 | 6715 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trc-RA | 2277 | CG8637-RA | 213..1589 | 17..1393 | 6870 | 99.9 | Plus |
| trc-RB | 2816 | CG8637-RB | 213..1601 | 17..1393 | 6715 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19832228..19832715 | 1301..814 | 2425 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19833609..19834092 | 500..17 | 2420 | 100 | Minus |
| 3L | 28110227 | 3L | 19832934..19833146 | 709..497 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 19832770..19832878 | 816..708 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 19832079..19832170 | 1393..1302 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:58:37 has no hits.
BO09113.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:24 Download gff for
BO09113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 1..1380 | 17..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:10 Download gff for
BO09113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 201..1589 | 9..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:23 Download gff for
BO09113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 213..1589 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:24 Download gff for
BO09113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 201..1589 | 9..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:21 Download gff for
BO09113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trc-RA | 213..1589 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:21 Download gff for
BO09113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19832076..19832170 | 1302..1395 | 97 | <- | Minus |
| 3L | 19832228..19832712 | 817..1301 | 99 | <- | Minus |
| 3L | 19832770..19832876 | 710..816 | 100 | <- | Minus |
| 3L | 19832934..19833143 | 500..709 | 100 | <- | Minus |
| 3L | 19833610..19834092 | 17..499 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:23 Download gff for
BO09113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19826034..19826243 | 500..709 | 100 | <- | Minus |
| arm_3L | 19825176..19825270 | 1302..1395 | 97 | <- | Minus |
| arm_3L | 19825328..19825812 | 817..1301 | 99 | <- | Minus |
| arm_3L | 19825870..19825976 | 710..816 | 100 | <- | Minus |
| arm_3L | 19826710..19827192 | 17..499 | 100 | | Minus |
BO09113.pep Sequence
Translation from 16 to 1411
> BO09113.pep
MMSSRTQDADGASIRFSDHTLDKATKAKVTLENYYSNLVTQYGERKQRLA
KLEAQLKDESLSEAQRQEKRLQHAQKETEYLRLKRLRLGVEDFEALKVIG
RGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERDVLVEADH
QWVVKMYYSFQDPVNLYLIMEFLPGGDMMTLLMKKDTLSEEGTQFYISET
ALAIDSIHKLGFIHRDIKPDNLLLDARGHLKLSDFGLCTGLKKSHRTDFY
RDLSQAKPSDFIGTCASPMDSKRRAESWKRNRRALAYSTVGTPDYIAPEV
FLQTGYGPACDWWSLGVIMYEMLMGYPPFCSDNPQDTYRKVMNWRETLIF
PPEIPISEEAKETIINFCCEADRRLGSQRGLEDLKSVPFFRGVDWEHIRE
RPAAIPVEVRSIDDTSNFDEFPDVSLEIPSAPIPQGGEIAKDWVFINYTY
KRFEVRNLEASFLDH
BO09113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trc-PA | 459 | CG8637-PA | 1..459 | 1..459 | 2408 | 100 | Plus |
| trc-PB | 463 | CG8637-PB | 1..463 | 1..459 | 2393 | 99.1 | Plus |
| wts-PA | 1105 | CG12072-PA | 654..1087 | 28..453 | 982 | 44.3 | Plus |
| gek-PA | 1637 | CG4012-PA | 61..398 | 56..419 | 722 | 42.6 | Plus |
| Rok-PC | 1374 | CG9774-PC | 17..410 | 44..450 | 712 | 36.4 | Plus |
