Clone BO09117 Report

Search the DGRC for BO09117

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:17
Vector:pDNR-Dual
Associated Gene/Transcriptgkt-RA
Protein status:BO09117.pep: validated full length
Sequenced Size:1774

Clone Sequence Records

BO09117.3prime Sequence

889 bp (849 high quality bases) assembled on 2006-01-11

> BO09117.3prime
ATGGTCTAGAAAGCTTGCACCTTGTAGGTAATCCATCAGGAAGGGCTTAT
CATCTGGAGCATAGGGCGTCAATGGAACGTCGTATGGTAGCGGAAACGCT
GGCACTCCATCACGATTGTTACCCAAAGGAAAGGTGTCCTCGCCAGTCAC
AAATCTGGGCAGGAATAGGACGCCAGCCTCATAGTTGGCGATCCTCAGGC
AGGGTTGGATATTCGAGTTTTTGTTAAAGCAGCCCCAGGCTGCCTTCGAG
AGATTCGCCGAGGTTAAAACGAACCAGTACACCGACTGATCCTCCAGATT
GAAGCGCGTATAGCTCTTGATGTGCGGCATTGCCCGCGAGCGAAAGCGAT
CGCTGGACTTCCATTGCTGCAGATAGTCCTTGAGCCATGGCTGCTTATCG
TTGGTGTTCTTGCCGTAGGGCAAACACCCGCCGCCCAGCATTCCATCATG
ACTGCCCGCGACGTTGCCGTAGCTGGGATAGATCATCTTGAAGGGCGGCA
TCTGGCGCAGCTTGCCCACAGGCGTGGAATCCTTCTTCAGGCTATTGACG
AAATCCTGCTGAATCCAGGCCTGCACGTTGGCTCCCAGGCTGCCGATGCT
CGAGCTCTGGCAGACGACCGGTATGCGATCGTCGATGGGCGCCGCGTGTT
TGGCGAGCAAGGAGGCCAAGCGGGCGTGGCCCCATGGATGACCACGCACG
CTGCCCTCGCGATGACCTCCGGGCACAGAGCCCAAGAAGAAAACGTTGAT
GGCACTGAAATCACTGTTCCGAATCCTTGCTATCCAAGGCTGCAGCTGGC
TTATCTTGTACTCCACCAAGTACAGCATCAGATCCTGTTTGAAGCCCGTC
AGACTTTCGCCAGCGCCCGTATCCGCATCGACCGGCAGA

BO09117.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8825-PA 1743 gkt-RA 870..1740 889..19 4355 100 Minus
CG31953-PA 633 CG31953-RA 34..441 555..148 2040 100 Minus
CG31953-PA 633 CG31953-RA 501..630 148..19 650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-RA 2221 CG8825-RA 993..1863 889..19 4355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3161255..3161852 745..148 2990 100 Minus
2L 23513712 2L 3162548..3162955 555..148 2040 100 Minus
2L 23513712 2L 3161056..3161199 889..746 720 100 Minus
2L 23513712 2L 3161912..3162041 148..19 650 100 Minus
2L 23513712 2L 3163015..3163144 148..19 650 100 Minus
Blast to na_te.dros performed on 2015-01-31 15:10:37 has no hits.

BO09117.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:20 Download gff for BO09117.3prime
Subject Subject Range Query Range Percent Splice Strand
gkt-PA 871..1743 16..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:50 Download gff for BO09117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8825-PA 871..1743 16..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:12:35 Download gff for BO09117.3prime
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 994..1870 11..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:34:01 Download gff for BO09117.3prime
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 994..1870 11..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:34:01 Download gff for BO09117.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3161057..3161199 746..888 100 -> Minus
2L 3161255..3161852 148..745 100 -> Minus
2L 3161913..3162048 11..147 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:12:35 Download gff for BO09117.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3161057..3161199 746..888 100 -> Minus
arm_2L 3161255..3161852 148..745 100 -> Minus
arm_2L 3161913..3162048 11..147 97   Minus

BO09117.5prime Sequence

914 bp (827 high quality bases) assembled on 2006-01-10

> BO09117.5prime
GAAGTTATCAGTCGACATGAAGGAGTGTCCTTATGGCGAAAAGTGCTACA
GGAAGAATCCCATTCATTTTGGCGAGTTCTCCCATGCCCACCTTGATGCC
ATTTATGCGAAGGGAAATGAATCGGGGGACTATGAGATACCAGCCAATTA
CTCCAGCGAGATGATTCACACCCAGTTGAAGCTGCTGGAGAAACTGTTTC
CCAAGCAGGCAACCAACAAGGAACAGGAAGCACATTCCTCTAGCTCAAAA
CCAGCCGTAACTGCTCCGGTTGCCAGTGGATCCTCGAGTTCTGGGTCCCT
AGATACCAATCCCAGTGGATCGTCAGCCTCCGGGCCAGCTGCTTCCCAAG
ACACCTCAAATCTGGCCAAAAAACAGAAGCTAAATGCCAAGAACATCAGA
GATTATATTCCTGTGGTAATCGAAAAGGGAGGAATGGCCAAAAAGCTGGA
GCGGGCAGCTCCCTATAACATGTTCCTCACCGCGATCACGGACTCCAAGC
CCACCCACTCGGAGCCATTGAGCATAACGCTGCAGGAAATCCTGGACGAA
AGTCTCGGCGAGATTGAGAGCACCGTCCAAATTAACTTTATGGTGGACAT
TGGCTGGCTCCTGGGACACTACTACTTTGCCGGGATACTGGACAAGCCAC
TTTTGCTGCTCTACGGCGACGAATCGCCGGAGCTGCTTAGCATTGGGAAG
TTCAAGCAGCAGGTCACGGCCATTCGTGTCAAGATGCCCACGCCGTTTGC
CACCTCGCACACCAAGATGATGTTCCTCGGCTACAGCGATGGCTCCATGC
GGGTGGTCATATCCACGGCGAATCTGTACGAGGACGACTGGCACAATCGC
ACGCAGGGCCTGTGGATCAGTCCCAAGCTGCCTGCTCTGCCGGTCGATGC
GGATACGGGCGCTG

BO09117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8825-PA 1743 gkt-RA 1..898 17..914 4490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-RA 2221 CG8825-RA 122..1021 15..914 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3160203..3160750 93..640 2740 100 Plus
2L 23513712 2L 3160810..3161084 640..914 1375 100 Plus
2L 23513712 2L 3160071..3160148 15..92 390 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:50:57 has no hits.

BO09117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:21 Download gff for BO09117.5prime
Subject Subject Range Query Range Percent Splice Strand
gkt-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:52 Download gff for BO09117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8825-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:50 Download gff for BO09117.5prime
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 116..1021 7..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:31 Download gff for BO09117.5prime
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 116..1021 7..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:31 Download gff for BO09117.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3160065..3160148 7..92 96 -> Plus
2L 3160203..3160749 93..639 100 -> Plus
2L 3160810..3161084 640..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:50 Download gff for BO09117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3160065..3160148 7..92 96 -> Plus
arm_2L 3160203..3160749 93..639 100 -> Plus
arm_2L 3160810..3161084 640..914 100   Plus

BO09117.complete Sequence

1774 bp (1774 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631398

> BO09117.complete
GAAGTTATCAGTCGACATGAAGGAGTGTCCTTATGGCGAAAAGTGCTACA
GGAAGAATCCCATTCATTTTGGCGAGTTCTCCCATGCCCACCTTGATGCC
ATTTATGCGAAGGGAAATGAATCGGGGGACTATGAGATACCAGCCAATTA
CTCCAGCGAGATGATTCACACCCAGTTGAAGCTGCTGGAGAAACTGTTTC
CCAAGCAGGCAACCAACAAGGAACAGGAAGCACATTCCTCTAGCTCAAAA
CCAGCCGTAACTGCTCCGGTTGCCAGTGGATCCTCGAGTTCTGGGTCCCT
AGATACCAATCCCAGTGGATCGTCAGCCTCCGGGCCAGCTGCTTCCCAAG
ACACCTCAAATCTGGCCAAAAAACAGAAGCTAAATGCCAAGAACATCAGA
GATTATATTCCTGTGGTAATCGAAAAGGGAGGAATGGCCAAAAAGCTGGA
GCGGGCAGCTCCCTATAACATGTTCCTCACCGCGATCACGGACTCCAAGC
CCACCCACTCGGAGCCATTGAGCATAACGCTGCAGGAAATCCTGGACGAA
AGTCTCGGCGAGATTGAGAGCACCGTCCAAATTAACTTTATGGTGGACAT
TGGCTGGCTCCTGGGACACTACTACTTTGCCGGGATACTGGACAAGCCAC
TTTTGCTGCTCTACGGCGACGAATCGCCGGAGCTGCTTAGCATTGGGAAG
TTCAAGCAGCAGGTCACGGCCATTCGTGTCAAGATGCCCACGCCGTTTGC
CACCTCGCACACCAAGATGATGTTCCTCGGCTACAGCGATGGCTCCATGC
GGGTGGTCATATCCACGGCGAATCTGTACGAGGACGACTGGCACAATCGC
ACGCAGGGCCTGTGGATCAGTCCCAAGCTGCCTGCTCTGCCGGTCGATGC
GGATACGGGCGCTGGCGAAAGTCTGACGGGCTTCAAACAGGATCTGATGC
TGTACTTGGTGGAGTACAAGATAAGCCAGCTGCAGCCTTGGATAGCAAGG
ATTCGGAACAGTGATTTCAGTGCCATCAACGTTTTCTTCTTGGGCTCTGT
GCCCGGAGGTCATCGCGAGGGCAGCGTGCGTGGTCATCCATGGGGCCACG
CCCGCTTGGCCTCCTTGCTCGCCAAACACGCGGCGCCCATCGACGATCGC
ATACCGGTCGTCTGCCAGAGCTCGAGCATCGGCAGCCTGGGAGCCAACGT
GCAGGCCTGGATTCAGCAGGATTTCGTCAATAGCCTGAAGAAGGATTCCA
CGCCTGTGGGCAAGCTGCGCCAGATGCCGCCCTTCAAGATGATCTATCCC
AGCTACGGCAACGTCGCGGGCAGTCATGATGGAATGCTGGGCGGCGGGTG
TTTGCCCTACGGCAAGAACACCAACGATAAGCAGCCATGGCTCAAGGACT
ATCTGCAGCAATGGAAGTCCAGCGATCGCTTTCGCTCGCGGGCAATGCCG
CACATCAAGAGCTATACGCGCTTCAATCTGGAGGATCAGTCGGTGTACTG
GTTCGTTTTAACCTCGGCGAATCTCTCGAAGGCAGCCTGGGGCTGCTTTA
ACAAAAACTCGAATATCCAACCCTGCCTGAGGATCGCCAACTATGAGGCT
GGCGTCCTATTCCTGCCCAGATTTGTGACTGGCGAGGACACCTTTCCTTT
GGGTAACAATCGTGATGGAGTGCCAGCGTTTCCGCTACCATACGACGTTC
CATTGACGCCCTATGCTCCAGATGATAAGCCCTTCCTGATGGATTACCTA
CAAGGTGCAAGCTTTCTAGACCAT

BO09117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-RA 1743 CG8825-PA 1..1740 17..1756 8700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-RA 2221 CG8825-RA 122..1863 15..1756 8710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3161255..3161852 1030..1627 2990 100 Plus
2L 23513712 2L 3160203..3160750 93..640 2740 100 Plus
2L 23513712 2L 3162548..3162955 1220..1627 2040 100 Plus
2L 23513712 2L 3160810..3161199 640..1029 1950 100 Plus
2L 23513712 2L 3161912..3162041 1627..1756 650 100 Plus
2L 23513712 2L 3163015..3163144 1627..1756 650 100 Plus
2L 23513712 2L 3160071..3160148 15..92 390 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:45:13 has no hits.

BO09117.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:31 Download gff for BO09117.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 1..1743 17..1759 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:31 Download gff for BO09117.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 110..1864 7..1764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:51 Download gff for BO09117.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 124..1863 17..1758 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:31 Download gff for BO09117.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 110..1864 7..1764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:02 Download gff for BO09117.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 124..1863 17..1758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:02 Download gff for BO09117.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3160073..3160148 17..92 100 -> Plus
2L 3160203..3160749 93..639 100 -> Plus
2L 3160810..3161199 640..1029 100 -> Plus
2L 3161255..3161852 1030..1627 100 -> Plus
2L 3161913..3162041 1628..1758 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:51 Download gff for BO09117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3160073..3160148 17..92 100 -> Plus
arm_2L 3160203..3160749 93..639 100 -> Plus
arm_2L 3160810..3161199 640..1029 100 -> Plus
arm_2L 3161255..3161852 1030..1627 100 -> Plus
arm_2L 3161913..3162041 1628..1758 98   Plus

BO09117.pep Sequence

Translation from 16 to 1774

> BO09117.pep
MKECPYGEKCYRKNPIHFGEFSHAHLDAIYAKGNESGDYEIPANYSSEMI
HTQLKLLEKLFPKQATNKEQEAHSSSSKPAVTAPVASGSSSSGSLDTNPS
GSSASGPAASQDTSNLAKKQKLNAKNIRDYIPVVIEKGGMAKKLERAAPY
NMFLTAITDSKPTHSEPLSITLQEILDESLGEIESTVQINFMVDIGWLLG
HYYFAGILDKPLLLLYGDESPELLSIGKFKQQVTAIRVKMPTPFATSHTK
MMFLGYSDGSMRVVISTANLYEDDWHNRTQGLWISPKLPALPVDADTGAG
ESLTGFKQDLMLYLVEYKISQLQPWIARIRNSDFSAINVFFLGSVPGGHR
EGSVRGHPWGHARLASLLAKHAAPIDDRIPVVCQSSSIGSLGANVQAWIQ
QDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGK
NTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLTS
ANLSKAAWGCFNKNSNIQPCLRIANYEAGVLFLPRFVTGEDTFPLGNNRD
GVPAFPLPYDVPLTPYAPDDKPFLMDYLQGASFLDH

BO09117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-PA 580 CG8825-PA 1..580 1..580 3076 100 Plus