Clone Sequence Records
BO09117.3prime Sequence
889 bp (849 high quality bases) assembled on 2006-01-11
> BO09117.3prime
ATGGTCTAGAAAGCTTGCACCTTGTAGGTAATCCATCAGGAAGGGCTTAT
CATCTGGAGCATAGGGCGTCAATGGAACGTCGTATGGTAGCGGAAACGCT
GGCACTCCATCACGATTGTTACCCAAAGGAAAGGTGTCCTCGCCAGTCAC
AAATCTGGGCAGGAATAGGACGCCAGCCTCATAGTTGGCGATCCTCAGGC
AGGGTTGGATATTCGAGTTTTTGTTAAAGCAGCCCCAGGCTGCCTTCGAG
AGATTCGCCGAGGTTAAAACGAACCAGTACACCGACTGATCCTCCAGATT
GAAGCGCGTATAGCTCTTGATGTGCGGCATTGCCCGCGAGCGAAAGCGAT
CGCTGGACTTCCATTGCTGCAGATAGTCCTTGAGCCATGGCTGCTTATCG
TTGGTGTTCTTGCCGTAGGGCAAACACCCGCCGCCCAGCATTCCATCATG
ACTGCCCGCGACGTTGCCGTAGCTGGGATAGATCATCTTGAAGGGCGGCA
TCTGGCGCAGCTTGCCCACAGGCGTGGAATCCTTCTTCAGGCTATTGACG
AAATCCTGCTGAATCCAGGCCTGCACGTTGGCTCCCAGGCTGCCGATGCT
CGAGCTCTGGCAGACGACCGGTATGCGATCGTCGATGGGCGCCGCGTGTT
TGGCGAGCAAGGAGGCCAAGCGGGCGTGGCCCCATGGATGACCACGCACG
CTGCCCTCGCGATGACCTCCGGGCACAGAGCCCAAGAAGAAAACGTTGAT
GGCACTGAAATCACTGTTCCGAATCCTTGCTATCCAAGGCTGCAGCTGGC
TTATCTTGTACTCCACCAAGTACAGCATCAGATCCTGTTTGAAGCCCGTC
AGACTTTCGCCAGCGCCCGTATCCGCATCGACCGGCAGA
BO09117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8825-PA | 1743 | gkt-RA | 870..1740 | 889..19 | 4355 | 100 | Minus |
CG31953-PA | 633 | CG31953-RA | 34..441 | 555..148 | 2040 | 100 | Minus |
CG31953-PA | 633 | CG31953-RA | 501..630 | 148..19 | 650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gkt-RA | 2221 | CG8825-RA | 993..1863 | 889..19 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3161255..3161852 | 745..148 | 2990 | 100 | Minus |
2L | 23513712 | 2L | 3162548..3162955 | 555..148 | 2040 | 100 | Minus |
2L | 23513712 | 2L | 3161056..3161199 | 889..746 | 720 | 100 | Minus |
2L | 23513712 | 2L | 3161912..3162041 | 148..19 | 650 | 100 | Minus |
2L | 23513712 | 2L | 3163015..3163144 | 148..19 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:10:37 has no hits.
BO09117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:20 Download gff for
BO09117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-PA | 871..1743 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:50 Download gff for
BO09117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8825-PA | 871..1743 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:12:35 Download gff for
BO09117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 994..1870 | 11..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:34:01 Download gff for
BO09117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 994..1870 | 11..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:34:01 Download gff for
BO09117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3161057..3161199 | 746..888 | 100 | -> | Minus |
2L | 3161255..3161852 | 148..745 | 100 | -> | Minus |
2L | 3161913..3162048 | 11..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:12:35 Download gff for
BO09117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3161057..3161199 | 746..888 | 100 | -> | Minus |
arm_2L | 3161255..3161852 | 148..745 | 100 | -> | Minus |
arm_2L | 3161913..3162048 | 11..147 | 97 | | Minus |
BO09117.5prime Sequence
914 bp (827 high quality bases) assembled on 2006-01-10
> BO09117.5prime
GAAGTTATCAGTCGACATGAAGGAGTGTCCTTATGGCGAAAAGTGCTACA
GGAAGAATCCCATTCATTTTGGCGAGTTCTCCCATGCCCACCTTGATGCC
ATTTATGCGAAGGGAAATGAATCGGGGGACTATGAGATACCAGCCAATTA
CTCCAGCGAGATGATTCACACCCAGTTGAAGCTGCTGGAGAAACTGTTTC
CCAAGCAGGCAACCAACAAGGAACAGGAAGCACATTCCTCTAGCTCAAAA
CCAGCCGTAACTGCTCCGGTTGCCAGTGGATCCTCGAGTTCTGGGTCCCT
AGATACCAATCCCAGTGGATCGTCAGCCTCCGGGCCAGCTGCTTCCCAAG
ACACCTCAAATCTGGCCAAAAAACAGAAGCTAAATGCCAAGAACATCAGA
GATTATATTCCTGTGGTAATCGAAAAGGGAGGAATGGCCAAAAAGCTGGA
GCGGGCAGCTCCCTATAACATGTTCCTCACCGCGATCACGGACTCCAAGC
CCACCCACTCGGAGCCATTGAGCATAACGCTGCAGGAAATCCTGGACGAA
AGTCTCGGCGAGATTGAGAGCACCGTCCAAATTAACTTTATGGTGGACAT
TGGCTGGCTCCTGGGACACTACTACTTTGCCGGGATACTGGACAAGCCAC
TTTTGCTGCTCTACGGCGACGAATCGCCGGAGCTGCTTAGCATTGGGAAG
TTCAAGCAGCAGGTCACGGCCATTCGTGTCAAGATGCCCACGCCGTTTGC
CACCTCGCACACCAAGATGATGTTCCTCGGCTACAGCGATGGCTCCATGC
GGGTGGTCATATCCACGGCGAATCTGTACGAGGACGACTGGCACAATCGC
ACGCAGGGCCTGTGGATCAGTCCCAAGCTGCCTGCTCTGCCGGTCGATGC
GGATACGGGCGCTG
BO09117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8825-PA | 1743 | gkt-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gkt-RA | 2221 | CG8825-RA | 122..1021 | 15..914 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3160203..3160750 | 93..640 | 2740 | 100 | Plus |
2L | 23513712 | 2L | 3160810..3161084 | 640..914 | 1375 | 100 | Plus |
2L | 23513712 | 2L | 3160071..3160148 | 15..92 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:50:57 has no hits.
BO09117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:21 Download gff for
BO09117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:52 Download gff for
BO09117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8825-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:50 Download gff for
BO09117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 116..1021 | 7..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:31 Download gff for
BO09117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 116..1021 | 7..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:31 Download gff for
BO09117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3160065..3160148 | 7..92 | 96 | -> | Plus |
2L | 3160203..3160749 | 93..639 | 100 | -> | Plus |
2L | 3160810..3161084 | 640..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:50 Download gff for
BO09117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3160065..3160148 | 7..92 | 96 | -> | Plus |
arm_2L | 3160203..3160749 | 93..639 | 100 | -> | Plus |
arm_2L | 3160810..3161084 | 640..914 | 100 | | Plus |
BO09117.complete Sequence
1774 bp (1774 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631398
> BO09117.complete
GAAGTTATCAGTCGACATGAAGGAGTGTCCTTATGGCGAAAAGTGCTACA
GGAAGAATCCCATTCATTTTGGCGAGTTCTCCCATGCCCACCTTGATGCC
ATTTATGCGAAGGGAAATGAATCGGGGGACTATGAGATACCAGCCAATTA
CTCCAGCGAGATGATTCACACCCAGTTGAAGCTGCTGGAGAAACTGTTTC
CCAAGCAGGCAACCAACAAGGAACAGGAAGCACATTCCTCTAGCTCAAAA
CCAGCCGTAACTGCTCCGGTTGCCAGTGGATCCTCGAGTTCTGGGTCCCT
AGATACCAATCCCAGTGGATCGTCAGCCTCCGGGCCAGCTGCTTCCCAAG
ACACCTCAAATCTGGCCAAAAAACAGAAGCTAAATGCCAAGAACATCAGA
GATTATATTCCTGTGGTAATCGAAAAGGGAGGAATGGCCAAAAAGCTGGA
GCGGGCAGCTCCCTATAACATGTTCCTCACCGCGATCACGGACTCCAAGC
CCACCCACTCGGAGCCATTGAGCATAACGCTGCAGGAAATCCTGGACGAA
AGTCTCGGCGAGATTGAGAGCACCGTCCAAATTAACTTTATGGTGGACAT
TGGCTGGCTCCTGGGACACTACTACTTTGCCGGGATACTGGACAAGCCAC
TTTTGCTGCTCTACGGCGACGAATCGCCGGAGCTGCTTAGCATTGGGAAG
TTCAAGCAGCAGGTCACGGCCATTCGTGTCAAGATGCCCACGCCGTTTGC
CACCTCGCACACCAAGATGATGTTCCTCGGCTACAGCGATGGCTCCATGC
GGGTGGTCATATCCACGGCGAATCTGTACGAGGACGACTGGCACAATCGC
ACGCAGGGCCTGTGGATCAGTCCCAAGCTGCCTGCTCTGCCGGTCGATGC
GGATACGGGCGCTGGCGAAAGTCTGACGGGCTTCAAACAGGATCTGATGC
TGTACTTGGTGGAGTACAAGATAAGCCAGCTGCAGCCTTGGATAGCAAGG
ATTCGGAACAGTGATTTCAGTGCCATCAACGTTTTCTTCTTGGGCTCTGT
GCCCGGAGGTCATCGCGAGGGCAGCGTGCGTGGTCATCCATGGGGCCACG
CCCGCTTGGCCTCCTTGCTCGCCAAACACGCGGCGCCCATCGACGATCGC
ATACCGGTCGTCTGCCAGAGCTCGAGCATCGGCAGCCTGGGAGCCAACGT
GCAGGCCTGGATTCAGCAGGATTTCGTCAATAGCCTGAAGAAGGATTCCA
CGCCTGTGGGCAAGCTGCGCCAGATGCCGCCCTTCAAGATGATCTATCCC
AGCTACGGCAACGTCGCGGGCAGTCATGATGGAATGCTGGGCGGCGGGTG
TTTGCCCTACGGCAAGAACACCAACGATAAGCAGCCATGGCTCAAGGACT
ATCTGCAGCAATGGAAGTCCAGCGATCGCTTTCGCTCGCGGGCAATGCCG
CACATCAAGAGCTATACGCGCTTCAATCTGGAGGATCAGTCGGTGTACTG
GTTCGTTTTAACCTCGGCGAATCTCTCGAAGGCAGCCTGGGGCTGCTTTA
ACAAAAACTCGAATATCCAACCCTGCCTGAGGATCGCCAACTATGAGGCT
GGCGTCCTATTCCTGCCCAGATTTGTGACTGGCGAGGACACCTTTCCTTT
GGGTAACAATCGTGATGGAGTGCCAGCGTTTCCGCTACCATACGACGTTC
CATTGACGCCCTATGCTCCAGATGATAAGCCCTTCCTGATGGATTACCTA
CAAGGTGCAAGCTTTCTAGACCAT
BO09117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gkt-RA | 1743 | CG8825-PA | 1..1740 | 17..1756 | 8700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gkt-RA | 2221 | CG8825-RA | 122..1863 | 15..1756 | 8710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3161255..3161852 | 1030..1627 | 2990 | 100 | Plus |
2L | 23513712 | 2L | 3160203..3160750 | 93..640 | 2740 | 100 | Plus |
2L | 23513712 | 2L | 3162548..3162955 | 1220..1627 | 2040 | 100 | Plus |
2L | 23513712 | 2L | 3160810..3161199 | 640..1029 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 3161912..3162041 | 1627..1756 | 650 | 100 | Plus |
2L | 23513712 | 2L | 3163015..3163144 | 1627..1756 | 650 | 100 | Plus |
2L | 23513712 | 2L | 3160071..3160148 | 15..92 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:13 has no hits.
BO09117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:31 Download gff for
BO09117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 1..1743 | 17..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:31 Download gff for
BO09117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 110..1864 | 7..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:51 Download gff for
BO09117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 124..1863 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:31 Download gff for
BO09117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 110..1864 | 7..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:02 Download gff for
BO09117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gkt-RA | 124..1863 | 17..1758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:02 Download gff for
BO09117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3160073..3160148 | 17..92 | 100 | -> | Plus |
2L | 3160203..3160749 | 93..639 | 100 | -> | Plus |
2L | 3160810..3161199 | 640..1029 | 100 | -> | Plus |
2L | 3161255..3161852 | 1030..1627 | 100 | -> | Plus |
2L | 3161913..3162041 | 1628..1758 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:51 Download gff for
BO09117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3160073..3160148 | 17..92 | 100 | -> | Plus |
arm_2L | 3160203..3160749 | 93..639 | 100 | -> | Plus |
arm_2L | 3160810..3161199 | 640..1029 | 100 | -> | Plus |
arm_2L | 3161255..3161852 | 1030..1627 | 100 | -> | Plus |
arm_2L | 3161913..3162041 | 1628..1758 | 98 | | Plus |
BO09117.pep Sequence
Translation from 16 to 1774
> BO09117.pep
MKECPYGEKCYRKNPIHFGEFSHAHLDAIYAKGNESGDYEIPANYSSEMI
HTQLKLLEKLFPKQATNKEQEAHSSSSKPAVTAPVASGSSSSGSLDTNPS
GSSASGPAASQDTSNLAKKQKLNAKNIRDYIPVVIEKGGMAKKLERAAPY
NMFLTAITDSKPTHSEPLSITLQEILDESLGEIESTVQINFMVDIGWLLG
HYYFAGILDKPLLLLYGDESPELLSIGKFKQQVTAIRVKMPTPFATSHTK
MMFLGYSDGSMRVVISTANLYEDDWHNRTQGLWISPKLPALPVDADTGAG
ESLTGFKQDLMLYLVEYKISQLQPWIARIRNSDFSAINVFFLGSVPGGHR
EGSVRGHPWGHARLASLLAKHAAPIDDRIPVVCQSSSIGSLGANVQAWIQ
QDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGK
NTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLTS
ANLSKAAWGCFNKNSNIQPCLRIANYEAGVLFLPRFVTGEDTFPLGNNRD
GVPAFPLPYDVPLTPYAPDDKPFLMDYLQGASFLDH
BO09117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gkt-PA | 580 | CG8825-PA | 1..580 | 1..580 | 3076 | 100 | Plus |