Clone Sequence Records
BO09119.3prime Sequence
859 bp (836 high quality bases) assembled on 2006-01-11
> BO09119.3prime
ATGGTCTAGAAAGCTTGCGTTGTTATCTGTGGTCTGGGAGGGTTCAAATA
TGTCCAGCGACTTTAGAAGTGCCTCGGCCGACGGGTCGCGACCCTGGAAG
CGACGGAACACTTCCGCCGTGGGCACAGATCCGCCGCAGCTGAGGAAGGT
CTGCTTGTAGCGCCGGCCAACGACCGCGTAGTTCTCTTCGCTTCGCTGCT
CAGCAAAGCTGCTCGAAATGTCGGCGGCTATGAGGCGGGAATACAAGTGA
CTGAACTGGGCGGCCGCCCAATCTCCGGCAAAAATGTCGGTCAGGGAGCA
CGGATGTGCGTCCTTCTTGTCCAGCGGCATGCATTGATAAACCGGCCACA
GCTTGCGAACCACCTCCAGCCAGAAGGCATTCGAGCGGTGCAGCTCCACG
TCGAGATCCGCCAGGTAGAGGTCCTGGCACAGATTATAGCCAGCCAACTG
AGTCTTCAGCAATCGCATCTTCTGTGAAAGCTCAGCCTCCAAGGGCTCAC
CGCTGCTAAAGTGTCCGGATAGGCTTCGAATCACTGTGGGATCGTCGAGG
AAGTTGCTCATCACATGACCGGACACTTGAGAGGCATCCCACTCGATGTT
TGAGAGTCCCGCCAAATCGCTGTACCCCGCTTGGGTGAGCAGGTGTTGGA
GTCCGCTTCCAAAAGTCTTGAAGAGCATCTGCAGATCATCGTATCCAAGA
AGCGGGGGCTTGGCATCCGGACTTTGTGGCTCCGAAAAGTTAAATATCAG
CGCACAGAGAGGCGTCAGCCCGGCAGACTTATTGCTGTTCCGTATGCCCA
CCATCCAACCATTGTTTCTGCCGAACTTGTGCTCCTTGGAATAGCAGTCC
ACATAAAAG
BO09119.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-PA | 2193 | CG11771-RA | 1350..2190 | 859..19 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-RA | 2853 | CG11771-RA | 1473..2313 | 859..19 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24933539..24934379 | 859..19 | 4205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:14:51 has no hits.
BO09119.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:24 Download gff for
BO09119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-PA | 1350..2193 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:56 Download gff for
BO09119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-PA | 1350..2193 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:22 Download gff for
BO09119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 1473..2313 | 19..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:59:28 Download gff for
BO09119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 1473..2313 | 19..859 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:59:28 Download gff for
BO09119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24933539..24934379 | 19..859 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:22 Download gff for
BO09119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20759261..20760101 | 19..859 | 100 | | Minus |
BO09119.5prime Sequence
879 bp (802 high quality bases) assembled on 2006-01-11
> BO09119.5prime
GAAGTTATCAGTCGACATGCTAAATCTCCTACGAAGGCGCCCAACGTCGG
TGCCCCTCATCCGGGCCGCGCTTAGCGCTCCGCTGCACTCAACGGAAAAC
CGGCCGGGTTACATAGTGCTGGTACCGGAGATCGGTGAGGAGGGACCGCT
AGGCGAGGGCGTGCTCAAGCCGGACGGACTTCCCGCCTTCAGTGACATCA
CCATCGAGATGTGCTTGGGCGCCATTGGTCAGCAGGCATCGGCGGTGGAG
AACTCGGTGAAGGCGCTGGAGAGCGACCTGCACAGTGGCAAGCAGCTAAA
TGCCGCCAGCATCTTTCGGGAGCTGGACACCGTGACGGGTCCACTGGAGA
CGACATGGGGTGTGGCCAAGGCTCTGTACCTGGGCAATTCTACCCTGATA
CCCACCAAATCCTACATGAACATCCACGAACGAGCGCGTAACGCTCGGGC
AGCGAAGTTCTGCAATCAAACGGTGTATAAGGCACTCAAGGATGCTTCGT
CCGATTCGGGTCCAGATGAGCAGAGGATGCGACAGAAGTTCCTGCTCGAG
GGCAAGCTGAACGGGCTCACGCTGGACAAAGATAAGCAGGATGGACTGAA
AGAGCTGCTTACCCATTTGGGTCGAGAGAGAGCCAACTTCAAGAACAAGG
TCAACATGGCAGTGCACTCGTTTGGACAGATTATTACGGACTTCAATCTT
GTAAGAGATTTCCCGCCTTCGCTTCTTGAGGCAACAGCCCGCGATCCCGG
ACAACCTATGACGGGTCCTTGGAAGATAACCCTACAGCCTCAAGTGGTCG
ATGGTTTTCTAAAGCACTGCCCAGAGCGAATGCAGCGTTGGAACGTCTGG
AGGGCCAGTGTGCTGAAGGCATCCTCGCA
BO09119.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-PA | 2193 | CG11771-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-RA | 2853 | CG11771-RA | 121..986 | 14..879 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24932294..24933052 | 121..879 | 3795 | 100 | Plus |
| 3R | 32079331 | 3R | 24932130..24932237 | 14..121 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:51:15 has no hits.
BO09119.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:25 Download gff for
BO09119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:57 Download gff for
BO09119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:18:28 Download gff for
BO09119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 119..985 | 10..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:12:56 Download gff for
BO09119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 119..985 | 10..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:12:56 Download gff for
BO09119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24932128..24932236 | 10..120 | 98 | -> | Plus |
| 3R | 24932294..24933051 | 121..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:18:28 Download gff for
BO09119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20757850..20757958 | 10..120 | 98 | -> | Plus |
| arm_3R | 20758016..20758773 | 121..878 | 100 | | Plus |
BO09119.complete Sequence
2224 bp (2224 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631399
> BO09119.complete
GAAGTTATCAGTCGACATGCTAAATCTCCTACGAAGGCGCCCAACGTCGG
TGCCCCTCATCCGGGCCGCGCTTAGCGCTCCGCTGCACTCAACGGAAAAC
CGGCCGGGTTACATAGTGCTGGTACCGGAGATCGGTGAGGAGGGACCGCT
AGGCGAGGGCGTGCTCAAGCCGGACGGACTTCCCGCCTTCAGTGACATCA
CCATCGAGATGTGCTTGGGCGCCATTGGTCAGCAGGCATCGGCGGTGGAG
AACTCGGTGAAGGCGCTGGAGAGCGACCTGCACAGTGGCAAGCAGCTAAA
TGCCGCCAGCATCTTTCGGGAGCTGGACACCGTGACGGGTCCACTGGAGA
CGACATGGGGTGTGGCCAAGGCTCTGTACCTGGGCAATTCTACCCTGATA
CCCACCAAATCCTACATGAACATCCACGAACGAGCGCGTAACGCTCGGGC
AGCGAAGTTCTGCAATCAAACGGTGTATAAGGCACTCAAGGATGCTTCGT
CCGATTCGGGTCCAGATGAGCAGAGGATGCGACAGAAGTTCCTGCTCGAG
GGCAAGCTGAACGGGCTCACGCTGGACAAAGATAAGCAGGATGGACTGAA
AGAGCTGCTTACCCATTTGGGTCGAGAGAGAGCCAACTTCAAGAACAAGG
TCAACATGGCAGTGCACTCGTTTGGACAGATTATTACGGACTTCAATCTT
GTAAGAGATTTCCCGCCTTCGCTTCTTGAGGCAACAGCCCGCGATCCCGG
ACAACCTATGACGGGTCCTTGGAAGATAACCCTACAGCCTCAAGTGGTCG
ATGGTTTTCTAAAGCACTGCCCAGAGCGAATGCAGCGTTGGAACGTCTGG
AGGGCCAGTGTGCTGAAGGCATCCTCGCAGCAGGAAAAATCCCTGGAGAA
CAGCACACACATCGAAAAAATACGCGGTTTGCGCAAGCGACAGGCAAATC
TGTTGGGCTATGAAAGCTTTGCAGACATGTCCATGCAGACCAAAATGGTG
GGCAGTGTGGACAACCTTAAGCAGATCTTTGCCAAGCTTCTCAAGTTCGC
CGGCCCTGCTCAAAGTGTGGAGCTGGAGAAACTACAGGGCTTCGCTCAGG
ACAGTGGCTGTGAATACAAGCTGGAAGCCTACGACGTTGCCTACTGGCGG
CGCAAGCAACTGGCGGCGGAGCACGGTCTCCAAGATCAGAAGCTCCGCGA
GTTTTTCCCACTGCCCCGCGTTCTTTCCGGCTTGTTTGCGCTGAGTGAAA
AGCTCTTCGGCATCAAAATAGTTGAGCAGCCCAATGCGGAGGTGTGGCAT
CCGGCAGTTAAGTTCTACGATGTGTTCGATGCTGATTCCGTCAATAGCTC
CACCCCGGTGGGTGGCTTTTATGTGGACTGCTATTCCAAGGAGCACAAGT
TCGGCAGAAACAATGGTTGGATGGTGGGCATACGGAACAGCAATAAGTCT
GCCGGGCTGACGCCTCTCTGTGCGCTGATATTTAACTTTTCGGAGCCACA
AAGTCCGGATGCCAAGCCCCCGCTTCTTGGATACGATGATCTGCAGATGC
TCTTCAAGACTTTTGGAAGCGGACTCCAACACCTGCTCACCCAAGCGGGG
TACAGCGATTTGGCGGGACTCTCAAACATCGAGTGGGATGCCTCTCAAGT
GTCCGGTCATGTGATGAGCAACTTCCTCGACGATCCCACAGTGATTCGAA
GCCTATCCGGACACTTTAGCAGCGGTGAGCCCTTGGAGGCTGAGCTTTCA
CAGAAGATGCGATTGCTGAAGACTCAGTTGGCTGGCTATAATCTGTGCCA
GGACCTCTACCTGGCGGATCTCGACGTGGAGCTGCACCGCTCGAATGCCT
TCTGGCTGGAGGTGGTTCGCAAGCTGTGGCCGGTTTATCAATGCATGCCG
CTGGACAAGAAGGACGCACATCCGTGCTCCCTGACCGACATTTTTGCCGG
AGATTGGGCGGCCGCCCAGTTCAGTCACTTGTATTCCCGCCTCATAGCCG
CCGACATTTCGAGCAGCTTTGCTGAGCAGCGAAGCGAAGAGAACTACGCG
GTCGTTGGCCGGCGCTACAAGCAGACCTTCCTCAGCTGCGGCGGATCTGT
GCCCACGGCGGAAGTGTTCCGTCGCTTCCAGGGTCGCGACCCGTCGGCCG
AGGCACTTCTAAAGTCGCTGGACATATTTGAACCCTCCCAGACCACAGAT
AACAACGCAAGCTTTCTAGACCAT
BO09119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-RA | 2193 | CG11771-PA | 1..2190 | 17..2206 | 10950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-RA | 2853 | CG11771-RA | 121..2313 | 14..2206 | 10965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24932294..24934379 | 121..2206 | 10430 | 100 | Plus |
| 3R | 32079331 | 3R | 24932130..24932237 | 14..121 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:42:41 has no hits.
BO09119.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:00 Download gff for
BO09119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 1..2193 | 17..2209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:04 Download gff for
BO09119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 112..2306 | 10..2206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:57 Download gff for
BO09119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 124..2313 | 17..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:00 Download gff for
BO09119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 112..2306 | 10..2206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:08 Download gff for
BO09119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 124..2313 | 17..2208 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:08 Download gff for
BO09119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24932133..24932236 | 17..120 | 100 | -> | Plus |
| 3R | 24932294..24934379 | 121..2208 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:57 Download gff for
BO09119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20757855..20757958 | 17..120 | 100 | -> | Plus |
| arm_3R | 20758016..20760101 | 121..2208 | 99 | | Plus |
BO09119.pep Sequence
Translation from 16 to 2224
> BO09119.pep
MLNLLRRRPTSVPLIRAALSAPLHSTENRPGYIVLVPEIGEEGPLGEGVL
KPDGLPAFSDITIEMCLGAIGQQASAVENSVKALESDLHSGKQLNAASIF
RELDTVTGPLETTWGVAKALYLGNSTLIPTKSYMNIHERARNARAAKFCN
QTVYKALKDASSDSGPDEQRMRQKFLLEGKLNGLTLDKDKQDGLKELLTH
LGRERANFKNKVNMAVHSFGQIITDFNLVRDFPPSLLEATARDPGQPMTG
PWKITLQPQVVDGFLKHCPERMQRWNVWRASVLKASSQQEKSLENSTHIE
KIRGLRKRQANLLGYESFADMSMQTKMVGSVDNLKQIFAKLLKFAGPAQS
VELEKLQGFAQDSGCEYKLEAYDVAYWRRKQLAAEHGLQDQKLREFFPLP
RVLSGLFALSEKLFGIKIVEQPNAEVWHPAVKFYDVFDADSVNSSTPVGG
FYVDCYSKEHKFGRNNGWMVGIRNSNKSAGLTPLCALIFNFSEPQSPDAK
PPLLGYDDLQMLFKTFGSGLQHLLTQAGYSDLAGLSNIEWDASQVSGHVM
SNFLDDPTVIRSLSGHFSSGEPLEAELSQKMRLLKTQLAGYNLCQDLYLA
DLDVELHRSNAFWLEVVRKLWPVYQCMPLDKKDAHPCSLTDIFAGDWAAA
QFSHLYSRLIAADISSSFAEQRSEENYAVVGRRYKQTFLSCGGSVPTAEV
FRRFQGRDPSAEALLKSLDIFEPSQTTDNNASFLDH
BO09119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-PA | 730 | CG11771-PA | 1..730 | 1..730 | 3801 | 100 | Plus |
| CG7791-PA | 699 | CG7791-PA | 270..680 | 306..718 | 219 | 21.3 | Plus |
