Clone Sequence Records
BO09120.3prime Sequence
887 bp (855 high quality bases) assembled on 2006-01-11
> BO09120.3prime
ATGGTCTAGAAAGCTTGCTTCATCTGAGGCGCTTCCAGAGCTGGATCCTG
AACCAGAAGGCGAGCCACTGCGAGACCGGCTGGGCGATCGCGACCCAGAG
CCAGATCTGGAGCCCGAACGTGATCGGGAACCGGACTTGGATCTCGACCT
AGAACGCGACCGAGAGCCGGACTTGGAACGGGATCGGGAACGTGATACCG
ATCTCGATCTGGATCCGGATTTCTGGGATCCTGCCGGCGAATTTGTGCGT
GATCTGGAGCCGCTACCAGACCGAGAACCAGACTTTGAGCGGCTGCTGGC
CCGAGAGCCGGAGCCAGATCCAGATCCTGAACTGGACCCGCTGCGAGTTC
GACTCCGAGAACGAGACTGTCGATCGCGGGCTACCTGGGCGGGTGAGTCC
GCTCCAGATGCTGCCTGTGCGCCAACAGCTGCGTCCTCGCTCGTCTTCTC
CGTCTCGCCAATGATTTGCATTTGCTCCTCTTCCCTCACTTCTTCCACGA
TCTCCTCCTCCTCGCCAGGAACTTCTAGCTGGCGCTCGCGATAGCGCTGC
ATACGATGCTCCATGCTGTCCAATGGACGATGCTTGACAACCAGCTTGGT
GTTGTTGGGTTGCTGGCCAACCTTAACGCGACGCTTGTTAAGGCGCACAC
GGGTTTCTAGCTCGTTGTAGTAGATGCCGTCCTGACGCATCACGAAGAAG
TAGTTTTCTTCGTAGCCCTTGGAAGCTTTGGTCTTCACGTTCCAGTTGTA
CTCTCGAGCGATCTTGTACTCGTACTCCTCCTCCTCCTTGTACAGCTCGC
CATTGATGAAGTCTGTACGGCGTTTCTCCAGCGTCTGCTCTGTGGGCAGG
AAGTAGGCGACAAACTGTTCGCCGCTCTCGTCCATCA
BO09120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2503-PA | 1617 | atms-RA | 746..1614 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 1118..1986 | 887..19 | 4345 | 100 | Minus |
| atms-RA | 1769 | CG2503-RA | 847..1715 | 887..19 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4776863..4777436 | 592..19 | 2870 | 100 | Minus |
| 3R | 32079331 | 3R | 4776509..4776806 | 887..590 | 1490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:38:07 has no hits.
BO09120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:26 Download gff for
BO09120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-PA | 747..1617 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:58 Download gff for
BO09120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2503-PA | 747..1617 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:10 Download gff for
BO09120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 848..1715 | 19..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:03 Download gff for
BO09120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 848..1715 | 19..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:03 Download gff for
BO09120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4776510..4776804 | 592..886 | 100 | -> | Minus |
| 3R | 4776864..4777436 | 19..591 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:10 Download gff for
BO09120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 602232..602526 | 592..886 | 100 | -> | Minus |
| arm_3R | 602586..603158 | 19..591 | 100 | | Minus |
BO09120.5prime Sequence
868 bp (848 high quality bases) assembled on 2006-01-10
> BO09120.5prime
GAAGTTATCAGTCGACATGCCACCCACGATCAACAATTCGGCGGTAAACA
GTGCCGCCGAAAAGCGACCCCAGCGGCAAACGGAGCGCAAATCCGAGATC
ATTTGCCGCGTGAAGTATGGAAACAACCTGCCGGATATACCATTTGATCT
GAAGTTTCTGCAGTACCCCTTCGACAGCCACCGCTTCGTGCAGTACAACC
CAACGTCGCTAGAGCGTAACTTCAAGTATGACGTGCTGACGGAACACGAT
TTGGGTGTCACGGTGGACCTGATTAACCGGGAGCTCTATCAGGCCGACTC
CATGACGCTGCTGGACCCCGCCGATGAAAAACTGCTGGAGGAGGAGACTC
TGACGCCCACAGACTCTGTGCGTTCGCGCCAGCATTCGAGGACGGTGTCA
TGGTTGCGCAAATCCGAGTACATCTCCACCGAGCAGACGCGCTTCCAGCC
CCAGAACCTGGAGAACATCGAGGCCAAGGTCGGTTACAACGTCAAGAAGT
CGCTTCGGGAGGAGACTCTCTACCTGGACCGCGAAGCCCAGATCAAAGCC
ATCGAGAAGACCTTCAGCGACACCAAGAGCGAAATTACCAAGCACTATTC
CAAGCCCAATGTGGTGCCAGTGGAGGTACTGCCTATCTTCCCCGACTTCA
CCAACTGGAAGTTCCCGTGCGCCCAGGTCATATTTGACAGTGATCCCGCT
CCTGCGGGCAAGAACGTGCCCGCCCAGCTGGAGGAGATGTCGCAGGCCAT
GATTCGTGGTGTGATGGACGAGAGCGGCGAACAGTTTGTCGCCTACTTCC
TGCCCACAGAGCAGACGCTGGAGAAACGCCGTACAGACTTCATCAATGGC
GAGCTGTACAAGGAGGAG
BO09120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2503-PA | 1617 | atms-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 373..1224 | 17..868 | 4260 | 100 | Plus |
| atms-RA | 1769 | CG2503-RA | 102..953 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4775834..4776615 | 87..868 | 3895 | 99.9 | Plus |
| 3R | 32079331 | 3R | 4775706..4775779 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:20:38 has no hits.
BO09120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:27 Download gff for
BO09120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:02:59 Download gff for
BO09120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2503-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:53 Download gff for
BO09120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 95..953 | 10..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:25 Download gff for
BO09120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 95..953 | 10..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:25 Download gff for
BO09120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4775699..4775779 | 10..90 | 96 | -> | Plus |
| 3R | 4775838..4776615 | 91..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:53 Download gff for
BO09120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 601421..601501 | 10..90 | 96 | -> | Plus |
| arm_3R | 601560..602337 | 91..868 | 100 | | Plus |
BO09120.complete Sequence
1648 bp (1648 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631400
> BO09120.complete
GAAGTTATCAGTCGACATGCCACCCACGATCAACAATTCGGCGGTAAACA
GTGCCGCCGAAAAGCGACCCCAGCGGCAAACGGAGCGCAAATCCGAGATC
ATTTGCCGCGTGAAGTATGGAAACAACCTGCCGGATATACCATTTGATCT
GAAGTTTCTGCAGTACCCCTTCGACAGCCACCGCTTCGTGCAGTACAACC
CAACGTCGCTAGAGCGTAACTTCAAGTATGACGTGCTGACGGAACACGAT
TTGGGTGTCACGGTGGACCTGATTAACCGGGAGCTCTATCAGGCCGACTC
CATGACGCTGCTGGACCCCGCCGATGAAAAACTGCTGGAGGAGGAGACTC
TGACGCCCACAGACTCTGTGCGTTCGCGCCAGCATTCGAGGACGGTGTCA
TGGTTGCGCAAATCCGAGTACATCTCCACCGAGCAGACGCGCTTCCAGCC
CCAGAACCTGGAGAACATCGAGGCCAAGGTCGGTTACAACGTCAAGAAGT
CGCTTCGGGAGGAGACTCTCTACCTGGACCGCGAAGCCCAGATCAAAGCC
ATCGAGAAGACCTTCAGCGACACCAAGAGCGAAATTACCAAGCACTATTC
CAAGCCCAATGTGGTGCCAGTGGAGGTACTGCCTATCTTCCCCGACTTCA
CCAACTGGAAGTTCCCGTGCGCCCAGGTCATATTTGACAGTGATCCCGCT
CCTGCGGGCAAGAACGTGCCCGCCCAGCTGGAGGAGATGTCGCAGGCCAT
GATTCGTGGTGTGATGGACGAGAGCGGCGAACAGTTTGTCGCCTACTTCC
TGCCCACAGAGCAGACGCTGGAGAAACGCCGTACAGACTTCATCAATGGC
GAGCTGTACAAGGAGGAGGAGGAGTACGAGTACAAGATCGCTCGAGAGTA
CAACTGGAACGTGAAGACCAAAGCTTCCAAGGGCTACGAAGAAAACTACT
TCTTCGTGATGCGTCAGGACGGCATCTACTACAACGAGCTAGAAACCCGT
GTGCGCCTTAACAAGCGTCGCGTTAAGGTTGGCCAGCAACCCAACAACAC
CAAGCTGGTTGTCAAGCATCGTCCATTGGACAGCATGGAGCATCGTATGC
AGCGCTATCGCGAGCGCCAGCTAGAAGTTCCTGGCGAGGAGGAGGAGATC
GTGGAAGAAGTGAGGGAAGAGGAGCAAATGCAAATCATTGGCGAGACGGA
GAAGACGAGCGAGGACGCAGCTGTTGGCGCACAGGCAGCATCTGGAGCGG
ACTCACCCGCCCAGGTAGCCCGCGATCGACAGTCTCGTTCTCGGAGTCGA
ACTCGCAGCGGGTCCAGTTCAGGATCTGGATCTGGCTCCGGCTCTCGGGC
CAGCAGCCGCTCAAAGTCTGGTTCTCGGTCTGGTAGCGGCTCCAGATCAC
GCACAAATTCGCCGGCAGGATCCCAGAAATCCGGATCCAGATCGAGATCG
GTATCACGTTCCCGATCCCGTTCCAAGTCCGGCTCTCGGTCGCGTTCTAG
GTCGAGATCCAAGTCCGGTTCCCGATCACGTTCGGGCTCCAGATCTGGCT
CTGGGTCGCGATCGCCCAGCCGGTCTCGCAGTGGCTCGCCTTCTGGTTCA
GGATCCAGCTCTGGAAGCGCCTCAGATGAAGCAAGCTTTCTAGACCAT
BO09120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 1617 | CG2503-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| atms-RA | 1617 | CG2503-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 373..1986 | 17..1630 | 8070 | 100 | Plus |
| atms-RA | 1769 | CG2503-RA | 102..1715 | 17..1630 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4775834..4776806 | 87..1059 | 4850 | 99.9 | Plus |
| 3R | 32079331 | 3R | 4776863..4777436 | 1057..1630 | 2870 | 100 | Plus |
| 3R | 32079331 | 3R | 4775706..4775779 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:40:37 has no hits.
BO09120.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:25 Download gff for
BO09120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 1..1617 | 17..1633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:12 Download gff for
BO09120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 99..1719 | 10..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:07 Download gff for
BO09120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 102..1715 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:25 Download gff for
BO09120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 99..1719 | 10..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:01 Download gff for
BO09120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 102..1715 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:01 Download gff for
BO09120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4775706..4775779 | 17..90 | 100 | -> | Plus |
| 3R | 4775838..4776804 | 91..1057 | 100 | -> | Plus |
| 3R | 4776864..4777436 | 1058..1632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:07 Download gff for
BO09120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 601428..601501 | 17..90 | 100 | -> | Plus |
| arm_3R | 601560..602526 | 91..1057 | 100 | -> | Plus |
| arm_3R | 602586..603158 | 1058..1632 | 99 | | Plus |
BO09120.pep Sequence
Translation from 16 to 1648
> BO09120.pep
MPPTINNSAVNSAAEKRPQRQTERKSEIICRVKYGNNLPDIPFDLKFLQY
PFDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLD
PADEKLLEEETLTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLEN
IEAKVGYNVKKSLREETLYLDREAQIKAIEKTFSDTKSEITKHYSKPNVV
PVEVLPIFPDFTNWKFPCAQVIFDSDPAPAGKNVPAQLEEMSQAMIRGVM
DESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVK
TKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVK
HRPLDSMEHRMQRYRERQLEVPGEEEEIVEEVREEEQMQIIGETEKTSED
AAVGAQAASGADSPAQVARDRQSRSRSRTRSGSSSGSGSGSGSRASSRSK
SGSRSGSGSRSRTNSPAGSQKSGSRSRSVSRSRSRSKSGSRSRSRSRSKS
GSRSRSGSRSGSGSRSPSRSRSGSPSGSGSSSGSASDEASFLDH
BO09120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-PB | 538 | CG2503-PB | 1..538 | 1..538 | 2734 | 100 | Plus |
| atms-PA | 538 | CG2503-PA | 1..538 | 1..538 | 2734 | 100 | Plus |
| CG2469-PA | 1150 | CG2469-PA | 927..1147 | 339..540 | 316 | 42.1 | Plus |
| CG2469-PB | 1150 | CG2469-PB | 927..1147 | 339..540 | 316 | 42.1 | Plus |
| CG9915-PC | 820 | CG9915-PC | 312..459 | 407..540 | 217 | 54.7 | Plus |
| CG2469-PA | 1150 | CG2469-PA | 838..1059 | 366..540 | 175 | 32.9 | Plus |
| CG2469-PB | 1150 | CG2469-PB | 838..1059 | 366..540 | 175 | 32.9 | Plus |
