Clone BO09121 Report

Search the DGRC for BO09121

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG4953-RA
Protein status:BO09121.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO09121.3prime Sequence

898 bp (828 high quality bases) assembled on 2006-01-11

> BO09121.3prime
ATGGTCTAGAAAGCTTGCTACAACTTGCAGTTGAACTTGCTTTTGGGTCA
AACAGCTTGCAGCACTCTCGTAACGAATTAACTTATTCTGATGAGTTGTG
GTATCATTATCGTAATCCGAATTAACAACAAAAACATCGACGACGTTTTC
AATGGTGAACTGCTCATTTTGGAGCGTATTCGTCAATACCAAGGGTGTTA
TTTTCACGAGGCCCAATTTAGATGGACAGACGGACAATGGAAATTCGGCA
GATTCGCCACTTTGTAGAAGATTCAGCATAAAATCAGCACAGCCCGTGTA
TTGACTATCGGGCGAAAACTTGGCAGCCAATCGCACATTCAGTTTCATTG
GATGCTCGGATGTGTTCGTCACGCGACAATTGAACGTGAATATCGTGCCG
ATTTTAATGGTGTTCTTCGCATCCAGTACTTCCAGGCGGAGCGTTTTGCA
TTCGAATGGCAATCGCTGTAGCTGACTGGTTTGCAGTCTGCCCTTCTCGC
CCAGATTCGACCTCCAGACGATGTCCAGTTTACCCACATTATTAAATTGC
CGCAGGGTATCTACATTCTTCGCAATATCTCCTTTGGGCTTGATGCAATA
GAGGAACTGACAACTATTGTTGGGTTGCAGCATATGTTTCACCGTGAATA
CGGATTCCCCATTTGGCAGCGTGTTCAGTGGTGTGACGGAGTAGTCCTCG
GAGCCATCCAGCTCCACCTTTTCCAGGCAGAAGGGACTGGTGGTCACGTT
TTGGATTTGTGCCTCCAAGTAGATTTCGTCGATTTCCGCATTGTAGAACT
TGGTTTTCACATCGAGTGGCTTCAGCACTTGAAACTTGAAAAACTTTCTC
AGCGATTGAGCATAGCCCGCAGGAGTCGAGTAGTTCACTTCGCAGACG

BO09121.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 1317 CG4953-RA 435..1314 898..19 4375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1746 CG4953-RA 542..1421 898..19 4385 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10267982..10268423 460..19 2210 100 Minus
2L 23513712 2L 10267427..10267736 898..589 1535 99.7 Minus
2L 23513712 2L 10267797..10267927 590..460 655 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:01:48 has no hits.

BO09121.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:28 Download gff for BO09121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 435..1317 18..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:01 Download gff for BO09121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 435..1317 18..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:47:40 Download gff for BO09121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 542..1421 19..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:01 Download gff for BO09121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 542..1421 19..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:01 Download gff for BO09121.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10267427..10267736 589..898 99 -> Minus
2L 10267799..10267927 460..588 100 -> Minus
2L 10267983..10268423 19..459 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:47:40 Download gff for BO09121.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10267427..10267736 589..898 99 -> Minus
arm_2L 10267799..10267927 460..588 100 -> Minus
arm_2L 10267983..10268423 19..459 100   Minus

BO09121.5prime Sequence

922 bp (844 high quality bases) assembled on 2006-01-10

> BO09121.5prime
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAATG
CAAACGCTCCGCCTGAAATACT

BO09121.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 1317 CG4953-RA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1746 CG4953-RA 106..1007 15..915 4485 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10266911..10267300 58..447 1950 100 Plus
2L 23513712 2L 10267424..10267736 448..760 1565 100 Plus
2L 23513712 2L 10267797..10267927 759..889 655 100 Plus
2L 23513712 2L 10266808..10266852 15..59 225 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:46:31 has no hits.

BO09121.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:29 Download gff for BO09121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 1..908 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:03 Download gff for BO09121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 1..908 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:54 Download gff for BO09121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 106..1015 15..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:37 Download gff for BO09121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 106..1015 15..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:37 Download gff for BO09121.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10266808..10266852 15..59 100 -> Plus
2L 10266913..10267300 60..447 100 -> Plus
2L 10267424..10267736 448..760 100 -> Plus
2L 10267799..10267927 761..889 100 -> Plus
2L 10267983..10268017 890..922 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:54 Download gff for BO09121.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10266808..10266852 15..59 100 -> Plus
arm_2L 10266913..10267300 60..447 100 -> Plus
arm_2L 10267424..10267736 448..760 100 -> Plus
arm_2L 10267799..10267927 761..889 100 -> Plus
arm_2L 10267983..10268017 890..922 91   Plus

BO09121.complete Sequence

1348 bp (1348 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631401

> BO09121.complete
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAATG
CAAAACGCTCCGCCTGGAAGTACTGGATGCGAAGAACACCATTAAAATCG
GCACGATATTCACGTTCAATTGTCGCGTGACGAACACATCCGAGCATCCA
ATGAAACTGAATGTGCGATTGGCTGCCAAGTTTTCGCCCGATAGTCAATA
CACGGGCTGTGCTGATTTTATGCTGAATCTTCTACAAAGTGGCGAATCTG
CCGAATTTCCATTGTCCGTCTGTCCATCTAAATTGGGCCTCGTGAAAATA
ACACCCTTGGTATTGACGAATACGCTCCAAAATGAGCAGTTCACCATTGA
AAACGTCGTCGATGTTTTTGTTGTTAATTCGGATTACGATAATGATACCA
CAACTCATCAGAATAAGTTAATTCGTTACGAGAGTGCTGCAAGCTGTTTG
ACCCAAAAGCAAGTTCAACTGCAAGTTGTAGCAAGCTTTCTAGACCAT

BO09121.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1317 CG4953-PA 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1746 CG4953-RA 106..1421 15..1330 6580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10267982..10268423 889..1330 2210 100 Plus
2L 23513712 2L 10266911..10267300 58..447 1950 100 Plus
2L 23513712 2L 10267424..10267736 448..760 1565 100 Plus
2L 23513712 2L 10267797..10267927 759..889 655 100 Plus
2L 23513712 2L 10266808..10266852 15..59 225 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:21:39 has no hits.

BO09121.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:10 Download gff for BO09121.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 1..1317 17..1331 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:56 Download gff for BO09121.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 107..1422 15..1330 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:30 Download gff for BO09121.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 108..1421 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:10 Download gff for BO09121.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 107..1422 15..1330 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:57 Download gff for BO09121.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 108..1421 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:57 Download gff for BO09121.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10266810..10266852 17..59 100 -> Plus
2L 10266913..10267300 60..447 100 -> Plus
2L 10267424..10267736 448..760 100 -> Plus
2L 10267799..10267927 761..889 100 -> Plus
2L 10267983..10268423 890..1332 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:30 Download gff for BO09121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10266810..10266852 17..59 100 -> Plus
arm_2L 10266913..10267300 60..447 100 -> Plus
arm_2L 10267424..10267736 448..760 100 -> Plus
arm_2L 10267799..10267927 761..889 100 -> Plus
arm_2L 10267983..10268423 890..1332 99   Plus

BO09121.pep Sequence

Translation from 16 to 1348

> BO09121.pep
MEMVEPDAHLVALKVMRLMRPTLVGLGPVVTCEPTDLVQRFSSSQESDGM
SGACAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKA
DLQSNTSRINLSMHENAKSPVVLPPGGTIDDVIRYEVKEIGTHILVCEVN
YSTPAGYAQSLRKFFKFQVLKPLDVKTKFYNAEIDEIYLEAQIQNVTTSP
FCLEKVELDGSEDYSVTPLNTLPNGESVFTVKHMLQPNNSCQFLYCIKPK
GDIAKNVDTLRQFNNVGKLDIVWRSNLGEKGRLQTSQLQRLPFECKTLRL
EVLDAKNTIKIGTIFTFNCRVTNTSEHPMKLNVRLAAKFSPDSQYTGCAD
FMLNLLQSGESAEFPLSVCPSKLGLVKITPLVLTNTLQNEQFTIENVVDV
FVVNSDYDNDTTTHQNKLIRYESAASCLTQKQVQLQVVASFLDH

BO09121.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 438 CG4953-PA 1..438 1..438 2265 100 Plus