Clone Sequence Records
BO09121.3prime Sequence
898 bp (828 high quality bases) assembled on 2006-01-11
> BO09121.3prime
ATGGTCTAGAAAGCTTGCTACAACTTGCAGTTGAACTTGCTTTTGGGTCA
AACAGCTTGCAGCACTCTCGTAACGAATTAACTTATTCTGATGAGTTGTG
GTATCATTATCGTAATCCGAATTAACAACAAAAACATCGACGACGTTTTC
AATGGTGAACTGCTCATTTTGGAGCGTATTCGTCAATACCAAGGGTGTTA
TTTTCACGAGGCCCAATTTAGATGGACAGACGGACAATGGAAATTCGGCA
GATTCGCCACTTTGTAGAAGATTCAGCATAAAATCAGCACAGCCCGTGTA
TTGACTATCGGGCGAAAACTTGGCAGCCAATCGCACATTCAGTTTCATTG
GATGCTCGGATGTGTTCGTCACGCGACAATTGAACGTGAATATCGTGCCG
ATTTTAATGGTGTTCTTCGCATCCAGTACTTCCAGGCGGAGCGTTTTGCA
TTCGAATGGCAATCGCTGTAGCTGACTGGTTTGCAGTCTGCCCTTCTCGC
CCAGATTCGACCTCCAGACGATGTCCAGTTTACCCACATTATTAAATTGC
CGCAGGGTATCTACATTCTTCGCAATATCTCCTTTGGGCTTGATGCAATA
GAGGAACTGACAACTATTGTTGGGTTGCAGCATATGTTTCACCGTGAATA
CGGATTCCCCATTTGGCAGCGTGTTCAGTGGTGTGACGGAGTAGTCCTCG
GAGCCATCCAGCTCCACCTTTTCCAGGCAGAAGGGACTGGTGGTCACGTT
TTGGATTTGTGCCTCCAAGTAGATTTCGTCGATTTCCGCATTGTAGAACT
TGGTTTTCACATCGAGTGGCTTCAGCACTTGAAACTTGAAAAACTTTCTC
AGCGATTGAGCATAGCCCGCAGGAGTCGAGTAGTTCACTTCGCAGACG
BO09121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-PA | 1317 | CG4953-RA | 435..1314 | 898..19 | 4375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1746 | CG4953-RA | 542..1421 | 898..19 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10267982..10268423 | 460..19 | 2210 | 100 | Minus |
2L | 23513712 | 2L | 10267427..10267736 | 898..589 | 1535 | 99.7 | Minus |
2L | 23513712 | 2L | 10267797..10267927 | 590..460 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:01:48 has no hits.
BO09121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:28 Download gff for
BO09121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 435..1317 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:01 Download gff for
BO09121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 435..1317 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:47:40 Download gff for
BO09121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 542..1421 | 19..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:01 Download gff for
BO09121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 542..1421 | 19..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:01 Download gff for
BO09121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10267427..10267736 | 589..898 | 99 | -> | Minus |
2L | 10267799..10267927 | 460..588 | 100 | -> | Minus |
2L | 10267983..10268423 | 19..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:47:40 Download gff for
BO09121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10267427..10267736 | 589..898 | 99 | -> | Minus |
arm_2L | 10267799..10267927 | 460..588 | 100 | -> | Minus |
arm_2L | 10267983..10268423 | 19..459 | 100 | | Minus |
BO09121.5prime Sequence
922 bp (844 high quality bases) assembled on 2006-01-10
> BO09121.5prime
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAATG
CAAACGCTCCGCCTGAAATACT
BO09121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-PA | 1317 | CG4953-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1746 | CG4953-RA | 106..1007 | 15..915 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10266911..10267300 | 58..447 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 10267424..10267736 | 448..760 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 10267797..10267927 | 759..889 | 655 | 100 | Plus |
2L | 23513712 | 2L | 10266808..10266852 | 15..59 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:46:31 has no hits.
BO09121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:29 Download gff for
BO09121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 1..908 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:03 Download gff for
BO09121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 1..908 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:54 Download gff for
BO09121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 106..1015 | 15..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:37 Download gff for
BO09121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 106..1015 | 15..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:37 Download gff for
BO09121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10266808..10266852 | 15..59 | 100 | -> | Plus |
2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
2L | 10267983..10268017 | 890..922 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:54 Download gff for
BO09121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10266808..10266852 | 15..59 | 100 | -> | Plus |
arm_2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
arm_2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
arm_2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
arm_2L | 10267983..10268017 | 890..922 | 91 | | Plus |
BO09121.complete Sequence
1348 bp (1348 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631401
> BO09121.complete
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAATG
CAAAACGCTCCGCCTGGAAGTACTGGATGCGAAGAACACCATTAAAATCG
GCACGATATTCACGTTCAATTGTCGCGTGACGAACACATCCGAGCATCCA
ATGAAACTGAATGTGCGATTGGCTGCCAAGTTTTCGCCCGATAGTCAATA
CACGGGCTGTGCTGATTTTATGCTGAATCTTCTACAAAGTGGCGAATCTG
CCGAATTTCCATTGTCCGTCTGTCCATCTAAATTGGGCCTCGTGAAAATA
ACACCCTTGGTATTGACGAATACGCTCCAAAATGAGCAGTTCACCATTGA
AAACGTCGTCGATGTTTTTGTTGTTAATTCGGATTACGATAATGATACCA
CAACTCATCAGAATAAGTTAATTCGTTACGAGAGTGCTGCAAGCTGTTTG
ACCCAAAAGCAAGTTCAACTGCAAGTTGTAGCAAGCTTTCTAGACCAT
BO09121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1317 | CG4953-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1746 | CG4953-RA | 106..1421 | 15..1330 | 6580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10267982..10268423 | 889..1330 | 2210 | 100 | Plus |
2L | 23513712 | 2L | 10266911..10267300 | 58..447 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 10267424..10267736 | 448..760 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 10267797..10267927 | 759..889 | 655 | 100 | Plus |
2L | 23513712 | 2L | 10266808..10266852 | 15..59 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:21:39 has no hits.
BO09121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:10 Download gff for
BO09121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 1..1317 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:56 Download gff for
BO09121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 107..1422 | 15..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:30 Download gff for
BO09121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 108..1421 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:10 Download gff for
BO09121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 107..1422 | 15..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:57 Download gff for
BO09121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 108..1421 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:57 Download gff for
BO09121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10266810..10266852 | 17..59 | 100 | -> | Plus |
2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
2L | 10267983..10268423 | 890..1332 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:30 Download gff for
BO09121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10266810..10266852 | 17..59 | 100 | -> | Plus |
arm_2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
arm_2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
arm_2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
arm_2L | 10267983..10268423 | 890..1332 | 99 | | Plus |
BO09121.pep Sequence
Translation from 16 to 1348
> BO09121.pep
MEMVEPDAHLVALKVMRLMRPTLVGLGPVVTCEPTDLVQRFSSSQESDGM
SGACAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKA
DLQSNTSRINLSMHENAKSPVVLPPGGTIDDVIRYEVKEIGTHILVCEVN
YSTPAGYAQSLRKFFKFQVLKPLDVKTKFYNAEIDEIYLEAQIQNVTTSP
FCLEKVELDGSEDYSVTPLNTLPNGESVFTVKHMLQPNNSCQFLYCIKPK
GDIAKNVDTLRQFNNVGKLDIVWRSNLGEKGRLQTSQLQRLPFECKTLRL
EVLDAKNTIKIGTIFTFNCRVTNTSEHPMKLNVRLAAKFSPDSQYTGCAD
FMLNLLQSGESAEFPLSVCPSKLGLVKITPLVLTNTLQNEQFTIENVVDV
FVVNSDYDNDTTTHQNKLIRYESAASCLTQKQVQLQVVASFLDH
BO09121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-PA | 438 | CG4953-PA | 1..438 | 1..438 | 2265 | 100 | Plus |