Clone Sequence Records
BO09122.3prime Sequence
933 bp (882 high quality bases) assembled on 2006-01-11
> BO09122.3prime
ATGGTCTAGAAAGCTTGCTTTGATCCAGCGCAGCACCGATGTGGCCGCCA
TTCGCACGAAGGCGATGGTAGACTGCTGGTTGGCCGCCGGCATCAGATTG
GGATCCGCCAGCTCCGGCTGCGGTGTCAGGCTGGGCACCGCCTCCCAGTC
CATGCGCAGAGAGTTTTCGTCCTCTGACTCCGATTCCGTGGCGGTCTCGA
TGCCGATTAGTAGGGAGTCCACTGACTTCATGAGTGGTGCATTGTTCACG
TCCAGATGGCCATATCGACCCAAGTCGCTGCGCTCCAGATCGAGGATGGC
TAGTAGGTTTTCCAGCGTATGCTGTTCGATGAGGGCACGCAACTTCACCT
GCTGTGTGTAGGCCAGATACATGATATTGGAGTTGAGGCGCGAGATTTTG
CGCCGGAACTGTTCCTCGTTGAGCAGCTTACGACAGAAGTCGCCATAGGC
GATCTTATGTGGCAGCCGCACGTTCAGGTAGAAGCTGAGCAACTGCGTCA
GCTGCGCCGTGTAGGTAAGAGCGCCCACAATGCGATAGGCTTCGAACCTG
CTCGGCGTAATCTCGTTGGCCGTGGCCTTGGGAACGTCGTCCTTGTTGTC
CGCCAGCCAGTCCAGGTAGGCGGTATAGTCGCCATTGGCTGGCAACGAAG
GGCCCACAATCCTGTATTGAACTTCACTGATCCCACTGCCATGAAAAACC
CATTTGCCGCGTATGTAAGATGTATTCTTGGCATCGGCCAGCGCCGCTAT
GGTTTCCGCCTCCTCGGTGCGCTCCACACTAGCCCGCCTCTGTTGCTCCT
CCTTGAGGACCACCTCAGCTATGGGAAACACATAGGTGACCAGTTGCTGA
ATGCTGCGACGCGCCGCCTGTTTTATGCTGTCCAGAAGACCCAGATGGGT
CTCCCTGAGTTCTCTATTTCTCCACTCGATCCA
BO09122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11877-PA | 1512 | CG11877-RA | 617..1509 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1866 | CG11877-RA | 670..1586 | 933..19 | 4535 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29117132..29117896 | 933..171 | 3725 | 99.7 | Minus |
| 3R | 32079331 | 3R | 29117958..29118110 | 171..19 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:51:55 has no hits.
BO09122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:30 Download gff for
BO09122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 594..1512 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:04 Download gff for
BO09122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 594..1512 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:38:21 Download gff for
BO09122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 671..1586 | 19..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:50 Download gff for
BO09122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 671..1586 | 19..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:50 Download gff for
BO09122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29117133..29117896 | 171..932 | 99 | -> | Minus |
| 3R | 29117959..29118110 | 19..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:38:21 Download gff for
BO09122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24942855..24943618 | 171..932 | 99 | -> | Minus |
| arm_3R | 24943681..24943832 | 19..170 | 100 | | Minus |
BO09122.5prime Sequence
866 bp (785 high quality bases) assembled on 2006-01-10
> BO09122.5prime
GAAGTTATCAGTCGACATGGCAAACAGCTCCAGCTCCGACGAAAGCTGCA
AGGCCCCCGACAACTTTCGCATCTCGAGCGCCTCCACAAACGGCGAGGAC
GAGGAATCAGATGTCGCAGGATACACAACAAAGCGCAGGCCAACGGCAGC
GACGAAGGAACTGTTGAAGGATGCGAACGCCAAGGATAGGAACGCCACCA
CGGGAATGGGTGCCCACATGCGGTGCCCACTGTGCCACAGCTGCAGCGCC
AGCCGATTCCACTGTCGCAATTGCGTCAGAAACGGAAACATTACTCACAG
CCAGGCGGAAAGGCCCGAAAGCCTGACGGAGAAGCAGCAGCGCTACATCA
ACCTGCAGGCGGGCCTCAAAACCTTCAGCACGCGCTACGAACGCCTTATC
GGGCAGCACCGCTCCAATGAAGATCGCCTGATGGCCATCAAGGCCAAGCG
AAAGCAACTGGAGCTCCTACAGCAACTAATCTCCGGCACGGGACAGAGAC
TGCGCGTCCTCGGCGAGCGACGCGATGAATTGCGTCGCGCCAATGCCGAG
AAGCGGAAGAACCTACCTAAATACCCGGACAAGGTCAAGATGCTCGAAAA
CTACGTGTTGGATCGAGTGGAGAAAATAGAGAAACTCAGGGAGACCCATC
TGGGTCTTCTGGACAGCATAAAACAGGCGGCGCGTCGCAGCATTCAGCAA
CTGGTCACCTATGTGTTTCCCATAGCTGAGGTGGTCCTCAAGGAGGAGCA
ACAGAGGCGGGCTAGTGTGGAGCGCACCGAGGAGGCGGAAACCATAGCGG
CGCTGGCCGATGCCAAGAATACATCTTACATACGCGGCAAATGGGTTTTT
CATGGCAGTGGGATCA
BO09122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11877-PA | 1512 | CG11877-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1866 | CG11877-RA | 78..927 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29116843..29117389 | 320..866 | 2735 | 100 | Plus |
| 3R | 32079331 | 3R | 29116468..29116772 | 17..321 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:21:00 has no hits.
BO09122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:31 Download gff for
BO09122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:05 Download gff for
BO09122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:48 Download gff for
BO09122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 75..926 | 11..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:45 Download gff for
BO09122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 75..926 | 11..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:45 Download gff for
BO09122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29116465..29116772 | 11..321 | 99 | -> | Plus |
| 3R | 29116845..29117388 | 322..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:48 Download gff for
BO09122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24942187..24942494 | 11..321 | 99 | -> | Plus |
| arm_3R | 24942567..24943110 | 322..865 | 100 | | Plus |
BO09122.complete Sequence
1543 bp (1543 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631402
> BO09122.complete
GAAGTTATCAGTCGACATGGCAAACAGCTCCAGCTCCGACGAAAGCTGCA
AGGCCCCCGACAACTTTCGCATCTCGAGCGCCTCCACAAACGGCGAGGAC
GAGGAATCAGATGTCGCAGGATACACAACAAAGCGCAGGCCAACGGCAGC
GACGAAGGAACTGTTGAAGGATGCGAACGCCAAGGATAGGAACGCCACCA
CGGGAATGGGTGCCCACATGCGGTGCCCACTGTGCCACAGCTGCAGCGCC
AGCCGATTCCACTGTCGCAATTGCGTCAGAAACGGAAACATTACTCACAG
CCAGGCGGAAAGGCCCGAAAGCCTGACGGAGAAGCAGCAGCGCTACATCA
ACCTGCAGGCGGGCCTCAAAACCTTCAGCACGCGCTACGAACGCCTTATC
GGGCAGCACCGCTCCAATGAAGATCGCCTGATGGCCATCAAGGCCAAGCG
AAAGCAACTGGAGCTCCTACAGCAACTAATCTCCGGCACGGGACAGAGAC
TGCGCGTCCTCGGCGAGCGACGCGATGAATTGCGTCGCGCCAATGCCGAG
AAGCGGAAGAACCTACCTAAATACCCGGACAAGGTCAAGATGCTCGAAAA
CTACGTGTTGGATCGAGTGGAGAAAATAGAGAAACTCAGGGAGACCCATC
TGGGTCTTCTGGACAGCATAAAACAGGCGGCGCGTCGCAGCATTCAGCAA
CTGGTCACCTATGTGTTTCCCATAGCTGAGGTGGTCCTCAAGGAGGAGCA
ACAGAGGCGGGCTAGTGTGGAGCGCACCGAGGAGGCGGAAACCATAGCGG
CGCTGGCCGATGCCAAGAATACATCTTACATACGCGGCAAATGGGTTTTT
CATGGCAGTGGGATCAGTGAAGTTCAATACAGGATTGTGGGCCCTTCGTT
GCCAGCCAATGGCGACTATACCGCCTACCTGGACTGGCTGGCGGACAACA
AGGACGACGTTCCCAAGGCCACGGCCAACGAGATTACGCCGAGCAGGTTC
GAAGCCTATCGCATTGTGGGCGCTCTTACCTACACGGCGCAGCTGACGCA
GTTGCTCAGCTTCTACCTGAACGTGCGGCTGCCACATAAGATCGCCTATG
GCGACTTCTGTCGTAAGCTGCTCAACGAGGAACAGTTCCGGCGCAAAATC
TCGCGCCTCAACTCCAATATCATGTATCTGGCCTACACACAGCAGGTGAA
GTTGCGTGCCCTCATCGAACAGCATACGCTGGAAAACCTACTAGCCATCC
TCGATCTGGAGCGCAGCGACTTGGGTCGATATGGCCATCTGGACGTGAAC
AATGCACCACTCATGAAGTCAGTGGACTCCCTACTAATCGGCATCGAGAC
CGCCACGGAATCGGAGTCAGAGGACGAAAACTCTCTGCGCATGGACTGGG
AGGCGGTGCCCAGCCTGACACCGCAGCCGGAGCTGGCGGATCCCAATCTG
ATGCCGGCGGCCAACCAGCAGTCTACCATCGCCTTCGTGCGAATGGCGGC
CACATCGGTGCTGCGCTGGATCAAAGCAAGCTTTCTAGACCAT
BO09122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1512 | CG11877-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1866 | CG11877-RA | 78..1586 | 17..1525 | 7545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29116843..29117896 | 320..1373 | 5270 | 100 | Plus |
| 3R | 32079331 | 3R | 29116468..29116772 | 17..321 | 1525 | 100 | Plus |
| 3R | 32079331 | 3R | 29117958..29118110 | 1373..1525 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:01:26 has no hits.
BO09122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:13 Download gff for
BO09122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-RA | 1..1512 | 17..1528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:58 Download gff for
BO09122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-RA | 78..1589 | 11..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:35 Download gff for
BO09122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 78..1586 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:13 Download gff for
BO09122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-RA | 78..1589 | 11..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:08 Download gff for
BO09122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 78..1586 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:08 Download gff for
BO09122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29117959..29118110 | 1374..1527 | 98 | | Plus |
| 3R | 29116468..29116772 | 17..321 | 100 | -> | Plus |
| 3R | 29116845..29117896 | 322..1373 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:35 Download gff for
BO09122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24942190..24942494 | 17..321 | 100 | -> | Plus |
| arm_3R | 24942567..24943618 | 322..1373 | 100 | -> | Plus |
| arm_3R | 24943681..24943832 | 1374..1527 | 98 | | Plus |
BO09122.pep Sequence
Translation from 16 to 1543
> BO09122.pep
MANSSSSDESCKAPDNFRISSASTNGEDEESDVAGYTTKRRPTAATKELL
KDANAKDRNATTGMGAHMRCPLCHSCSASRFHCRNCVRNGNITHSQAERP
ESLTEKQQRYINLQAGLKTFSTRYERLIGQHRSNEDRLMAIKAKRKQLEL
LQQLISGTGQRLRVLGERRDELRRANAEKRKNLPKYPDKVKMLENYVLDR
VEKIEKLRETHLGLLDSIKQAARRSIQQLVTYVFPIAEVVLKEEQQRRAS
VERTEEAETIAALADAKNTSYIRGKWVFHGSGISEVQYRIVGPSLPANGD
YTAYLDWLADNKDDVPKATANEITPSRFEAYRIVGALTYTAQLTQLLSFY
LNVRLPHKIAYGDFCRKLLNEEQFRRKISRLNSNIMYLAYTQQVKLRALI
EQHTLENLLAILDLERSDLGRYGHLDVNNAPLMKSVDSLLIGIETATESE
SEDENSLRMDWEAVPSLTPQPELADPNLMPAANQQSTIAFVRMAATSVLR
WIKASFLDH
BO09122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-PA | 503 | CG11877-PA | 1..503 | 1..503 | 2563 | 100 | Plus |
