Clone Sequence Records
BO09127.3prime Sequence
563 bp (562 high quality bases) assembled on 2006-01-11
> BO09127.3prime
ATGGTCTAGAAAGCTTGCCTGATACAGCTTGATCAGCTGCTCGTACTTGT
GCTCGATGATGGTCAGCACCTTGATGGTCTCCACGGCGGCGCCAAACATC
GGCCATATGTGATCGGCATTGTACTCGGCGTTCCTCGGATTGCAGGCATC
GTTGAGACCGGCGACCTTGAGAGCCTCGTGCATGTTGTGATGGAAGAAAT
GCACGAAGTTATTGAAGTAGCAGTTCCAGGACTGGTGATCGAACACAATG
ATCTCGTATAGATGCTCCAGGACCAGCAGGGACTCGATAATGGCCGGCAT
CTCCTCCTGCAGCGTTGTCACCTTGCCACTGTACACAAAGTCACCCAGCT
GGTTCTGGAACTTAACTTCCTTGACCTCCGACTGGAGCGGATGCTTCAAT
GCCAGGGAATGCAGAGAGTAGGAGTGAAGATCTTGGGGCAGGGTGTGGTT
TTGATTCCTCAGCCATTCTTTGGTCAGACAGAGGACCGCCTCCCGCGTAT
TCTTGGCCACCTCGAGCGCCACTTGCAGGTGTTCGATATTGGGAGTCATG
TCGACTGATAACT
BO09127.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6023-PA | 534 | CG6023-RA | 1..531 | 549..19 | 2655 | 100 | Minus |
CG6023-PB | 999 | CG6023-RB | 466..996 | 549..19 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6023-RC | 1453 | CG6023-RC | 554..1084 | 549..19 | 2655 | 100 | Minus |
CG6023-RA | 1425 | CG6023-RA | 526..1056 | 549..19 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18314493..18314937 | 19..463 | 2225 | 100 | Plus |
X | 23542271 | X | 18315017..18315103 | 463..549 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:04:43 has no hits.
BO09127.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:38 Download gff for
BO09127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-PB | 466..999 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:16 Download gff for
BO09127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-PB | 466..999 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:45 Download gff for
BO09127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 498..1031 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:05 Download gff for
BO09127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 526..1059 | 15..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:05 Download gff for
BO09127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18315017..18315103 | 463..549 | 100 | | Plus |
X | 18314490..18314936 | 15..462 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:45 Download gff for
BO09127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18208523..18208969 | 15..462 | 99 | <- | Plus |
arm_X | 18209050..18209136 | 463..549 | 100 | | Plus |
BO09127.5prime Sequence
563 bp (562 high quality bases) assembled on 2006-01-10
> BO09127.5prime
GAAGTTATCAGTCGACATGACTCCCAATATCGAACACCTGCAAGTGGCGC
TCGAGGTGGCCAAGAATACGCGGGAGGCGGTCCTCTGTCTGACCAAAGAA
TGGCTGAGGAATCAAAACCACACCCTGCCCCAAGATCTTCACTCCTACTC
TCTGCATTCCCTGGCATTGAAGCATCCGCTCCAGTCGGAGGTCAAGGAAG
TTAAGTTCCAGAACCAGCTGGGTGACTTTGTGTACAGTGGCAAGGTGACA
ACGCTGCAGGAGGAGATGCCGGCCATTATCGAGTCCCTGCTGGTCCTGGA
GCATCTATACGAGATCATTGTGTTCGATCACCAGTCCTGGAACTGCTACT
TCAATAACTTCGTGCATTTCTTCCATCACAACATGCACGAGGCTCTCAAG
GTCGCCGGTCTCAACGATGCCTGCAATCCGAGGAACGCCGAGTACAATGC
CGATCACATATGGCCGATGTTTGGCGCCGCCGTGGAGACCATCAAGGTGC
TGACCATCATCGAGCACAAGTACGAGCAGCTGATCAAGCTGTATCAGGCA
AGCTTTCTAGACC
BO09127.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6023-PA | 534 | CG6023-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
CG6023-PB | 999 | CG6023-RB | 466..996 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6023-RC | 1453 | CG6023-RC | 554..1084 | 17..547 | 2655 | 100 | Plus |
CG6023-RA | 1425 | CG6023-RA | 526..1056 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18314493..18314937 | 547..103 | 2225 | 100 | Minus |
X | 23542271 | X | 18315017..18315103 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:43:26 has no hits.
BO09127.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:39 Download gff for
BO09127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-PB | 466..999 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:18 Download gff for
BO09127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-PB | 466..999 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:42 Download gff for
BO09127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 498..1031 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:29 Download gff for
BO09127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 526..1059 | 17..551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:29 Download gff for
BO09127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18314490..18314936 | 104..551 | 99 | <- | Minus |
X | 18315017..18315103 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:42 Download gff for
BO09127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18208523..18208969 | 104..551 | 99 | <- | Minus |
arm_X | 18209050..18209136 | 17..103 | 100 | | Minus |
BO09127.complete Sequence
565 bp (565 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631403
> BO09127.complete
GAAGTTATCAGTCGACATGACTCCCAATATCGAACACCTGCAAGTGGCGC
TCGAGGTGGCCAAGAATACGCGGGAGGCGGTCCTCTGTCTGACCAAAGAA
TGGCTGAGGAATCAAAACCACACCCTGCCCCAAGATCTTCACTCCTACTC
TCTGCATTCCCTGGCATTGAAGCATCCGCTCCAGTCGGAGGTCAAGGAAG
TTAAGTTCCAGAACCAGCTGGGTGACTTTGTGTACAGTGGCAAGGTGACA
ACGCTGCAGGAGGAGATGCCGGCCATTATCGAGTCCCTGCTGGTCCTGGA
GCATCTATACGAGATCATTGTGTTCGATCACCAGTCCTGGAACTGCTACT
TCAATAACTTCGTGCATTTCTTCCATCACAACATGCACGAGGCTCTCAAG
GTCGCCGGTCTCAACGATGCCTGCAATCCGAGGAACGCCGAGTACAATGC
CGATCACATATGGCCGATGTTTGGCGCCGCCGTGGAGACCATCAAGGTGC
TGACCATCATCGAGCACAAGTACGAGCAGCTGATCAAGCTGTATCAGGCA
AGCTTTCTAGACCAT
BO09127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6023-RC | 918 | CG6023-PC | 385..915 | 17..547 | 2655 | 100 | Plus |
CG6023-RA | 534 | CG6023-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6023-RC | 1453 | CG6023-RC | 554..1084 | 17..547 | 2655 | 100 | Plus |
CG6023-RA | 1425 | CG6023-RA | 526..1056 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18314493..18314937 | 547..103 | 2225 | 100 | Minus |
X | 23542271 | X | 18315017..18315103 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:34:14 has no hits.
BO09127.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:25 Download gff for
BO09127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RB | 466..999 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:31 Download gff for
BO09127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 498..1031 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:07 Download gff for
BO09127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 498..1028 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:26 Download gff for
BO09127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 498..1031 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:05 Download gff for
BO09127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6023-RA | 526..1056 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:05 Download gff for
BO09127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18314491..18314936 | 104..549 | 99 | <- | Minus |
X | 18315017..18315103 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:07 Download gff for
BO09127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18208524..18208969 | 104..549 | 99 | <- | Minus |
arm_X | 18209050..18209136 | 17..103 | 100 | | Minus |
BO09127.pep Sequence
Translation from 16 to 565
> BO09127.pep
MTPNIEHLQVALEVAKNTREAVLCLTKEWLRNQNHTLPQDLHSYSLHSLA
LKHPLQSEVKEVKFQNQLGDFVYSGKVTTLQEEMPAIIESLLVLEHLYEI
IVFDHQSWNCYFNNFVHFFHHNMHEALKVAGLNDACNPRNAEYNADHIWP
MFGAAVETIKVLTIIEHKYEQLIKLYQASFLDH
BO09127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6023-PA | 177 | CG6023-PA | 1..177 | 1..177 | 946 | 100 | Plus |
CG6023-PC | 305 | CG6023-PC | 129..305 | 1..177 | 946 | 100 | Plus |