Clone BO09127 Report

Search the DGRC for BO09127

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG6023-RA
Protein status:BO09127.pep: validated not full length
Sequenced Size:565

Clone Sequence Records

BO09127.3prime Sequence

563 bp (562 high quality bases) assembled on 2006-01-11

> BO09127.3prime
ATGGTCTAGAAAGCTTGCCTGATACAGCTTGATCAGCTGCTCGTACTTGT
GCTCGATGATGGTCAGCACCTTGATGGTCTCCACGGCGGCGCCAAACATC
GGCCATATGTGATCGGCATTGTACTCGGCGTTCCTCGGATTGCAGGCATC
GTTGAGACCGGCGACCTTGAGAGCCTCGTGCATGTTGTGATGGAAGAAAT
GCACGAAGTTATTGAAGTAGCAGTTCCAGGACTGGTGATCGAACACAATG
ATCTCGTATAGATGCTCCAGGACCAGCAGGGACTCGATAATGGCCGGCAT
CTCCTCCTGCAGCGTTGTCACCTTGCCACTGTACACAAAGTCACCCAGCT
GGTTCTGGAACTTAACTTCCTTGACCTCCGACTGGAGCGGATGCTTCAAT
GCCAGGGAATGCAGAGAGTAGGAGTGAAGATCTTGGGGCAGGGTGTGGTT
TTGATTCCTCAGCCATTCTTTGGTCAGACAGAGGACCGCCTCCCGCGTAT
TCTTGGCCACCTCGAGCGCCACTTGCAGGTGTTCGATATTGGGAGTCATG
TCGACTGATAACT

BO09127.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-PA 534 CG6023-RA 1..531 549..19 2655 100 Minus
CG6023-PB 999 CG6023-RB 466..996 549..19 2655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-RC 1453 CG6023-RC 554..1084 549..19 2655 100 Minus
CG6023-RA 1425 CG6023-RA 526..1056 549..19 2655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18314493..18314937 19..463 2225 100 Plus
X 23542271 X 18315017..18315103 463..549 435 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:04:43 has no hits.

BO09127.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:38 Download gff for BO09127.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-PB 466..999 15..549 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:16 Download gff for BO09127.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-PB 466..999 15..549 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:45 Download gff for BO09127.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 498..1031 15..549 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:29:05 Download gff for BO09127.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 526..1059 15..549 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:29:05 Download gff for BO09127.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18315017..18315103 463..549 100   Plus
X 18314490..18314936 15..462 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:45 Download gff for BO09127.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18208523..18208969 15..462 99 <- Plus
arm_X 18209050..18209136 463..549 100   Plus

BO09127.5prime Sequence

563 bp (562 high quality bases) assembled on 2006-01-10

> BO09127.5prime
GAAGTTATCAGTCGACATGACTCCCAATATCGAACACCTGCAAGTGGCGC
TCGAGGTGGCCAAGAATACGCGGGAGGCGGTCCTCTGTCTGACCAAAGAA
TGGCTGAGGAATCAAAACCACACCCTGCCCCAAGATCTTCACTCCTACTC
TCTGCATTCCCTGGCATTGAAGCATCCGCTCCAGTCGGAGGTCAAGGAAG
TTAAGTTCCAGAACCAGCTGGGTGACTTTGTGTACAGTGGCAAGGTGACA
ACGCTGCAGGAGGAGATGCCGGCCATTATCGAGTCCCTGCTGGTCCTGGA
GCATCTATACGAGATCATTGTGTTCGATCACCAGTCCTGGAACTGCTACT
TCAATAACTTCGTGCATTTCTTCCATCACAACATGCACGAGGCTCTCAAG
GTCGCCGGTCTCAACGATGCCTGCAATCCGAGGAACGCCGAGTACAATGC
CGATCACATATGGCCGATGTTTGGCGCCGCCGTGGAGACCATCAAGGTGC
TGACCATCATCGAGCACAAGTACGAGCAGCTGATCAAGCTGTATCAGGCA
AGCTTTCTAGACC

BO09127.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-PA 534 CG6023-RA 1..531 17..547 2655 100 Plus
CG6023-PB 999 CG6023-RB 466..996 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-RC 1453 CG6023-RC 554..1084 17..547 2655 100 Plus
CG6023-RA 1425 CG6023-RA 526..1056 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18314493..18314937 547..103 2225 100 Minus
X 23542271 X 18315017..18315103 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:43:26 has no hits.

BO09127.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:39 Download gff for BO09127.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-PB 466..999 17..551 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:18 Download gff for BO09127.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-PB 466..999 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:42 Download gff for BO09127.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 498..1031 17..551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:29 Download gff for BO09127.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 526..1059 17..551 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:29 Download gff for BO09127.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18314490..18314936 104..551 99 <- Minus
X 18315017..18315103 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:42 Download gff for BO09127.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18208523..18208969 104..551 99 <- Minus
arm_X 18209050..18209136 17..103 100   Minus

BO09127.complete Sequence

565 bp (565 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631403

> BO09127.complete
GAAGTTATCAGTCGACATGACTCCCAATATCGAACACCTGCAAGTGGCGC
TCGAGGTGGCCAAGAATACGCGGGAGGCGGTCCTCTGTCTGACCAAAGAA
TGGCTGAGGAATCAAAACCACACCCTGCCCCAAGATCTTCACTCCTACTC
TCTGCATTCCCTGGCATTGAAGCATCCGCTCCAGTCGGAGGTCAAGGAAG
TTAAGTTCCAGAACCAGCTGGGTGACTTTGTGTACAGTGGCAAGGTGACA
ACGCTGCAGGAGGAGATGCCGGCCATTATCGAGTCCCTGCTGGTCCTGGA
GCATCTATACGAGATCATTGTGTTCGATCACCAGTCCTGGAACTGCTACT
TCAATAACTTCGTGCATTTCTTCCATCACAACATGCACGAGGCTCTCAAG
GTCGCCGGTCTCAACGATGCCTGCAATCCGAGGAACGCCGAGTACAATGC
CGATCACATATGGCCGATGTTTGGCGCCGCCGTGGAGACCATCAAGGTGC
TGACCATCATCGAGCACAAGTACGAGCAGCTGATCAAGCTGTATCAGGCA
AGCTTTCTAGACCAT

BO09127.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-RC 918 CG6023-PC 385..915 17..547 2655 100 Plus
CG6023-RA 534 CG6023-PA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-RC 1453 CG6023-RC 554..1084 17..547 2655 100 Plus
CG6023-RA 1425 CG6023-RA 526..1056 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18314493..18314937 547..103 2225 100 Minus
X 23542271 X 18315017..18315103 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:34:14 has no hits.

BO09127.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:25 Download gff for BO09127.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RB 466..999 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:31 Download gff for BO09127.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 498..1031 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:07 Download gff for BO09127.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 498..1028 17..549 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:26 Download gff for BO09127.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 498..1031 17..551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:05 Download gff for BO09127.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 526..1056 17..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:05 Download gff for BO09127.complete
Subject Subject Range Query Range Percent Splice Strand
X 18314491..18314936 104..549 99 <- Minus
X 18315017..18315103 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:07 Download gff for BO09127.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18208524..18208969 104..549 99 <- Minus
arm_X 18209050..18209136 17..103 100   Minus

BO09127.pep Sequence

Translation from 16 to 565

> BO09127.pep
MTPNIEHLQVALEVAKNTREAVLCLTKEWLRNQNHTLPQDLHSYSLHSLA
LKHPLQSEVKEVKFQNQLGDFVYSGKVTTLQEEMPAIIESLLVLEHLYEI
IVFDHQSWNCYFNNFVHFFHHNMHEALKVAGLNDACNPRNAEYNADHIWP
MFGAAVETIKVLTIIEHKYEQLIKLYQASFLDH

BO09127.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-PA 177 CG6023-PA 1..177 1..177 946 100 Plus
CG6023-PC 305 CG6023-PC 129..305 1..177 946 100 Plus