Clone Sequence Records
BO09128.3prime Sequence
940 bp (801 high quality bases) assembled on 2006-01-11
> BO09128.3prime
ATGGTCTAGAAAGCTTGCGCGTGGTCTCCGTGCCACGCCCCCATCCACGC
ACATGTTACGATCACTGAGGCAAGAGGCGTAACCAAGGGCGTGAGGTATG
AAATGCTGCTCGAAAACTCCGGTGAAAAGCTGGGCATACGGTCCACTAGC
AAAAACGGCCACATCATCGCCACCGTGCGTTTCCGATTCCAAGGGAACTG
TGCTGGGGAACATGAAGTCCTTGTTCTTCATATTGATGGCTCTCAGATTT
TTCCTCCGCACAGCGCCGCCTTCCCTGAGGTAGTTACTATCATAGCCCGG
TCCATTGGCATAGCTCAGAGTGGCATATGGAAGATCATCCGCCGCCAGCT
GTCCGTCATTGATGCCGAAGATATCGTTCTTTCTGCTGGAATAGCCCGCC
AGCGACATGGTGTGCGAGTGATCCGAACTGACCACTATTAAAGTGTCGTC
CGTACTCGTGTGACTCCTGGCAAATCGCACCGCTTTGTCGAACTCCGCCG
TTTCATCGATGGCCCTCAAAGCCAAGGTGTCGTGGTGACCATGATCGATC
CGACCGCCCTCCACGAAAAGGAAGTAACCGCGTCCGGCACTCTGGCGCTC
CAAGATTTCCATGGCCGACTGGACCATCTCCTCCAGCGTTGGTTGCTCTG
CTGGACTAGCATCCAGATGGTAGGCCATGTGGTAGGGGGCAAACAAGCCC
AGTACTCGTGAAGTGTGATTGGATAGGTTGAGCAGCTCCCTGCGATTCTC
CACATATTGAGCACTGTTCGTGTGCTGGTTCTTCCACTCGTCGATGAGAT
TGCGGCCATCCAAACGGCGACCAGGCGCTCCACTGGAATCAGTCACGCCT
TTGGGCAGGAAATTCTCGCGACCTCCGCCCATTATCACATTAAGTTTCTG
ACCCACCGGACTGTTTATCAGCTGGGCAGCTGCGTCCGGA
BO09128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-PA | 1641 | CG8147-RA | 717..1638 | 940..19 | 4610 | 100 | Minus |
| CG8147-PB | 1641 | CG8147-RB | 717..1638 | 940..19 | 4610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-RA | 1862 | CG8147-RA | 804..1725 | 940..19 | 4610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9495665..9496586 | 940..19 | 4610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:03:37 has no hits.
BO09128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:40 Download gff for
BO09128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-PB | 718..1641 | 16..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:19 Download gff for
BO09128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-PB | 718..1641 | 16..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:48:41 Download gff for
BO09128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 805..1733 | 11..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:52 Download gff for
BO09128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 805..1733 | 11..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:52 Download gff for
BO09128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9495666..9496594 | 11..939 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:48:41 Download gff for
BO09128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5321388..5322316 | 11..939 | 99 | | Minus |
BO09128.5prime Sequence
887 bp (772 high quality bases) assembled on 2006-01-10
> BO09128.5prime
GAAGTTATCAGTCGACATGAGGCTGCAGCTCTTCTTTTTTCTCGGCCTGA
GTGTTCTAGTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGCGAATG
CATCCGGTGTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGAGGAGG
TCGATACAAGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAGATCAG
AGGAGCGGTACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACACTGGAT
CAGCAGCTGGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGGAATGT
GATGCTCTTCATTGGCGACGGCATGTCCATACCGACAATCACGGCGGGTC
GCGTTTACTTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAATTCCCG
TATGTGGGTCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCCGACTC
CGCCTGCACCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTATGGCA
CGATCGGAGTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGCAGGCA
CAAGCCGCCCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAGCAGGG
AATGGCCACCGGACTGGTTACCACAACCTCCGTAACACATGCCTCACCAG
CTGGAGTGTACGCCCACCTGGCCAACCGGAACTGGGAGAACGACGCCGAA
GTGGTGGGAGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCTGCCCA
GCTGATAAACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGGCGGAG
GTCGCGAGAATTTTCTGCCCAAAGGCGTGACTGATTCCAGTGGAGCGCCT
GGTCGCCGTTTGGATGGCCGCAATCTCATCGACGAGT
BO09128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-PA | 1641 | CG8147-RA | 1..871 | 17..887 | 4330 | 99.8 | Plus |
| CG8147-PB | 1641 | CG8147-RB | 1..871 | 17..887 | 4330 | 99.8 | Plus |
| CG1809-PA | 1548 | CG1809-RA | 361..428 | 437..504 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-RA | 1862 | CG8147-RA | 88..958 | 17..887 | 4340 | 99.9 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 414..552 | 385..523 | 260 | 80 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 414..552 | 385..523 | 260 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9495002..9495819 | 70..887 | 4075 | 99.9 | Plus |
| 3R | 32079331 | 3R | 9494888..9494942 | 17..71 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 9562517..9562606 | 415..504 | 225 | 83.3 | Plus |
| 2R | 25286936 | 2R | 22210152..22210258 | 523..417 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:27 has no hits.
BO09128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:41 Download gff for
BO09128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-PB | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:21 Download gff for
BO09128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-PB | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:43 Download gff for
BO09128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 82..958 | 10..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:58 Download gff for
BO09128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 82..958 | 10..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:58 Download gff for
BO09128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9494882..9494942 | 10..71 | 93 | -> | Plus |
| 3R | 9495004..9495819 | 72..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:43 Download gff for
BO09128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5320604..5320664 | 10..71 | 93 | -> | Plus |
| arm_3R | 5320726..5321541 | 72..887 | 99 | | Plus |
BO09128.complete Sequence
1672 bp (1672 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631404
> BO09128.complete
GAAGTTATCAGTCGACATGAGGCTGCAGCTCTTCTTTTTTCTCGGCCTGA
GTGTTCTAGTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGCGAATG
CATCCGGTGTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGAGGAGG
TCGATACAAGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAGATCAG
AGGAGCGGTACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACACTGGAT
CAGCAGCTGGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGGAATGT
GATGCTCTTCATTGGCGACGGCATGTCCATACCGACAATCACGGCGGGTC
GCGTTTACTTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAATTCCCG
TATGTGGGTCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCCGACTC
CGCCTGCACCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTATGGCA
CGATCGGAGTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGCAGGCA
CAAGCCGCCCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAGCAGGG
AATGGCCACCGGACTGGTTACCACAACCTCCGTAACACATGCCTCACCAG
CTGGAGTGTACGCCCACCTGGCCAACCGGAACTGGGAGAACGACGCCGAA
GTGGTGGGAGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCTGCCCA
GCTGATAAACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGGCGGAG
GTCGCGAGAATTTTCTGCCCAAAGGCGTGACTGATTCCAGTGGAGCGCCT
GGTCGCCGTTTGGATGGCCGCAATCTCATCGACGAGTGGAAGAACCAGCA
CACGAACAGTGCTCAATATGTGGAGAATCGCAGGGAGCTGCTCAACCTAT
CCAATCACACTTCACGAGTACTGGGCTTGTTTGCCCCCTACCACATGGCC
TACCATCTGGATGCTAGTCCAGCAGAGCAACCAACGCTGGAGGAGATGGT
CCAGTCGGCCATGGAAATCTTGGAGCGCCAGAGTGCCGGACGCGGTTACT
TCCTTTTCGTGGAGGGCGGTCGGATCGATCATGGTCACCACGACACCTTG
GCTTTGAGGGCCATCGATGAAACGGCGGAGTTCGACAAAGCGGTGCGATT
TGCCAGGAGTCACACGAGTACGGACGACACTTTAATAGTGGTCAGTTCGG
ATCACTCGCACACCATGTCGCTGGCGGGCTATTCCAGCAGAAAGAACGAT
ATCTTCGGCATCAATGACGGACAGCTGGCGGCGGATGATCTTCCATATGC
CACTCTGAGCTATGCCAATGGACCGGGCTATGATAGTAACTACCTCAGGG
AAGGCGGCGCTGTGCGGAGGAAAAATCTGAGAGCCATCAATATGAAGAAC
AAGGACTTCATGTTCCCCAGCACAGTTCCCTTGGAATCGGAAACGCACGG
TGGCGATGATGTGGCCGTTTTTGCTAGTGGACCGTATGCCCAGCTTTTCA
CCGGAGTTTTCGAGCAGCATTTCATACCTCACGCCCTTGGTTACGCCTCT
TGCCTCAGTGATCGTAACATGTGCGTGGATGGGGGCGTGGCACGGAGACC
ACGCGCAAGCTTTCTAGACCAT
BO09128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-RA | 1641 | CG8147-PA | 1..1638 | 17..1654 | 8175 | 99.9 | Plus |
| CG3264-RB | 1602 | CG3264-PB | 372..510 | 385..523 | 260 | 79.1 | Plus |
| CG3264-RA | 1602 | CG3264-PA | 372..510 | 385..523 | 260 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-RA | 1862 | CG8147-RA | 88..1725 | 17..1654 | 8175 | 99.9 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 414..552 | 385..523 | 260 | 79.1 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 414..552 | 385..523 | 260 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9495002..9496586 | 70..1654 | 7910 | 99.9 | Plus |
| 3R | 32079331 | 3R | 9494888..9494942 | 17..71 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 9562517..9562606 | 415..504 | 225 | 83.3 | Plus |
| 2R | 25286936 | 2R | 22210152..22210258 | 523..417 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:31:14 has no hits.
BO09128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:16 Download gff for
BO09128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RB | 1..1641 | 17..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:00 Download gff for
BO09128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RB | 66..1717 | 10..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:47 Download gff for
BO09128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 88..1725 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:17 Download gff for
BO09128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RB | 66..1717 | 10..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:53 Download gff for
BO09128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8147-RA | 88..1725 | 17..1656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:53 Download gff for
BO09128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9494888..9494942 | 17..71 | 100 | -> | Plus |
| 3R | 9495004..9496586 | 72..1656 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:47 Download gff for
BO09128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5320610..5320664 | 17..71 | 100 | -> | Plus |
| arm_3R | 5320726..5322308 | 72..1656 | 99 | | Plus |
BO09128.pep Sequence
Translation from 16 to 1672
> BO09128.pep
MRLQLFFFLGLSVLVSGGESSHDAERRMHPVFSLMGTGSNPIGGGRYKRA
MPQIVFDAVRSEERYAEYWQGLAAQTLDQQLESKLRLNTQLARNVMLFIG
DGMSIPTITAGRVYLGGEEKQFAFEQFPYVGLSKTYCANMQVADSACTAT
AYLGGVKANYGTIGVSAAVQFKDCQAQAQAAHHVSSIAAWAQKQGMATGL
VTTTSVTHASPAGVYAHLANRNWENDAEVVGDNGDPDLCPDAAAQLINSP
VGQKLNVIMGGGRENFLPKGVTDSSGAPGRRLDGRNLIDEWKNQHTNSAQ
YVENRRELLNLSNHTSRVLGLFAPYHMAYHLDASPAEQPTLEEMVQSAME
ILERQSAGRGYFLFVEGGRIDHGHHDTLALRAIDETAEFDKAVRFARSHT
STDDTLIVVSSDHSHTMSLAGYSSRKNDIFGINDGQLAADDLPYATLSYA
NGPGYDSNYLREGGAVRRKNLRAINMKNKDFMFPSTVPLESETHGGDDVA
VFASGPYAQLFTGVFEQHFIPHALGYASCLSDRNMCVDGGVARRPRASFL
DH
BO09128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8147-PA | 546 | CG8147-PA | 1..546 | 1..546 | 2852 | 100 | Plus |
| CG5656-PA | 523 | CG5656-PA | 35..506 | 61..530 | 1206 | 51.2 | Plus |
| CG5656-PB | 530 | CG5656-PB | 35..513 | 61..530 | 1189 | 50.4 | Plus |
| CG1809-PA | 515 | CG1809-PA | 1..509 | 1..528 | 1187 | 49.4 | Plus |
| CG5150-PB | 517 | CG5150-PB | 46..511 | 61..532 | 1118 | 50 | Plus |
