Clone Sequence Records
BO09131.3prime Sequence
925 bp (796 high quality bases) assembled on 2006-01-11
> BO09131.3prime
ATGGTCTAGAAAGCTTGCGTCCAAACTTAAGAACTCCTGCAGTTTTTCAA
TGCGAGTGGAGTAGCTATTTGTTTCCTCGTCGAAAGTGATTTCGCTGCAG
GTGATAACGGACCCAATGGGATAATTTTTATCCAGCCATTTGATCTGCTC
ATCGGTGGGCTTCTCAGGCACTCCAATTAAATCCAACTGTGTGGTCATTA
TAGGGAAGATAAACTGCGGCGGATAGGGACGTATGTCGGTGACATGTGTT
GGCACTATGTTTCCGTAGTCAATGAACAAAATGCTGGGATAACCATCTCC
TACTAACTCCACAGAGAGACCTCGACGCCATTTGCCTTCGTACTTAGCTA
TGCAAAGCTCATTTATCGGCGGTGCGTAGGTTGCGCACTTGGCAATCTTT
TCACCATACTCCTGTATGTCTCGCTGCATTTTGGTGACTTCGTAAGCCAG
ATCTATGGAGGTGCAGTAGATAAAGCCGCACTGGATGAATGTGTTGTCCA
TTACCACTACATTTATGTTCTTTCCGCAGTGCAAGGGAATGTATGGAAGA
CAGTCCTCTTTGTATCCCAAGTCCGAGACAGACGGCTCAACAGGAGTTAG
GATGGTCTTGAAAAGGCGGTTGAGGCTCCTATTAATATCGATCTCGGTCA
TCACCACGACCTGCATGCCCTTGCTGGTATCGTACTCACGTGACGAGTAC
TTGATATTAAAAACTAGGGACTGGTCGAGTTCGTACATGACTTCCCTTAT
GTTGGGACCCACAAAGCGCCTGGGAACTCCGCGTAATTTAACGGCTACGG
GATAGCAGGTCAAACCAGCTAAATACGAACTGCATTCATACAGTCTTTCC
AGCTGCGTGACTTCAACACTTCCCGAAATCATGAACACTACATAAATTTC
CTTGATATTATCCACGTTTAGCACC
BO09131.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4771-PA | 2076 | CG4771-RA | 1219..2073 | 873..19 | 4275 | 100 | Minus |
| CG4771-PA | 2076 | CG4771-RA | 1167..1211 | 925..881 | 200 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vret-RA | 2328 | CG4771-RA | 1224..2130 | 925..19 | 4475 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22743858..22744230 | 553..925 | 1775 | 98.4 | Plus |
| 3R | 32079331 | 3R | 22743360..22743554 | 173..367 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 22743610..22743795 | 367..552 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 22743152..22743307 | 19..174 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:10:27 has no hits.
BO09131.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:46 Download gff for
BO09131.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-PA | 1167..2076 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:27 Download gff for
BO09131.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-PA | 1167..2076 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:20:17 Download gff for
BO09131.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 1215..2129 | 8..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:40 Download gff for
BO09131.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 1224..2138 | 8..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:40 Download gff for
BO09131.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22743858..22744230 | 553..925 | 99 | | Plus |
| 3R | 22743144..22743306 | 8..173 | 97 | <- | Plus |
| 3R | 22743361..22743554 | 174..367 | 100 | <- | Plus |
| 3R | 22743611..22743795 | 368..552 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:20:17 Download gff for
BO09131.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18568866..18569028 | 8..173 | 97 | <- | Plus |
| arm_3R | 18569083..18569276 | 174..367 | 100 | <- | Plus |
| arm_3R | 18569333..18569517 | 368..552 | 100 | <- | Plus |
| arm_3R | 18569580..18569952 | 553..925 | 99 | | Plus |
BO09131.5prime Sequence
859 bp (815 high quality bases) assembled on 2006-01-10
> BO09131.5prime
GAAGTTATCAGTCGACATGGAATCCGAATCCTCGCAGGATGATTGGTCCG
CATTCGATCCAATGTCCAGGGAATACTATGACCAAGTGGGCAACCGTTAC
ACTAACGAGTCTGGCCAGAAACTAATCATGGAAGCCCCGCTGCCGCCAAA
GGACGAAAAGGAGCAACGTGCCACCAGGCAGGCGAAGTATCCATACTTGG
TGGTTCCAAAAAGCAGTCCCTATGTGACCGAAAAGATGCTAATCAACTTC
TTCGGTCGGGCGCTCATCAAGGAGATGGAGTTCCGCCGCTTGTCACGCGT
ATACTTTGTCTACTTTGAAAATATCGCATCCCTGGAGACAGCGCAACAGC
GGGTGCAGCGTTACCCGAACCTGATCAAGTGCATCACTGGTCGCCCGCAA
AAGGAGCGGGAAATCACCAGCGATCCGGTGACTTCCACTGAGCCAATGCC
AACACCAGGCCCAGCAATTTCGGCCACTGAACGTACGCCAGTGAATCACA
ACAGAGAGGTTCCGATCTCGACCGGAGGACAAAATCATCCGGAGTTCTTC
CGGCCACCGCTGGTCACCAAAGATGATTACAAAAGAGGTTCATTGTTGGC
CACCAACGACCCCATTCAACGCTATCTCAATGTAAAGTACGAATTCGCAC
TGGAGCGCCATGATATCTACAAGCTTAAGGATGAGACCAGAATCCCGCAG
GTCGTTCTGCACTTTCGTTCGGGCAGAACGATTCCTTTGTCAACGGTTGC
TGTCACCGAAGAGGATAAAACTAANAGCCTGCTGGAAGACGGCGTCAGCA
AGTGCGTGGTTTGTCAAAACTGGACAGACACTTTCTGNCAGCTGTGCAAA
ATGCCCTTC
BO09131.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4771-PA | 2076 | CG4771-RA | 1..843 | 17..859 | 4152 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vret-RA | 2328 | CG4771-RA | 58..900 | 17..859 | 4178 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22744738..22745150 | 740..328 | 2065 | 100 | Minus |
| 3R | 32079331 | 3R | 22745214..22745524 | 327..17 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 22744554..22744674 | 859..739 | 568 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:40:34 has no hits.
BO09131.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:47 Download gff for
BO09131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:29 Download gff for
BO09131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:37:24 Download gff for
BO09131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 40..891 | 8..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:09:44 Download gff for
BO09131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 49..900 | 8..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:09:44 Download gff for
BO09131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22744554..22744674 | 739..859 | 97 | <- | Minus |
| 3R | 22744740..22745150 | 328..738 | 100 | <- | Minus |
| 3R | 22745214..22745533 | 8..327 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:37:24 Download gff for
BO09131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18570276..18570396 | 739..859 | 97 | <- | Minus |
| arm_3R | 18570462..18570872 | 328..738 | 100 | <- | Minus |
| arm_3R | 18570936..18571255 | 8..327 | 98 | | Minus |
BO09131.complete Sequence
2107 bp (2107 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631405
> BO09131.complete
GAAGTTATCAGTCGACATGGAATCCGAATCCTCGCAGGATGATTGGTCCG
CATTCGATCCAATGTCCAGGGAATACTATGACCAAGTGGGCAACCGTTAC
ACTAACGAGTCTGGCCAGAAACTAATCATGGAAGCCCCGCTGCCGCCAAA
GGACGAAAAGGAGCAACGTGCCACCAGGCAGGCGAAGTATCCATACTTGG
TGGTTCCAAAAAGCAGTCCCTATGTGACCGAAAAGATGCTAATCAACTTC
TTCGGTCGGGCGCTCATCAAGGAGATGGAGTTCCGCCGCTTGTCACGCGT
ATACTTTGTCTACTTTGAAAATATCGCATCCCTGGAGACAGCGCAACAGC
GGGTGCAGCGTTACCCGAACCTGATCAAGTGCATCACTGGTCGCCCGCAA
AAGGAGCGGGAAATCACCAGCGATCCGGTGACTTCCACTGAGCCAATGCC
AACACCAGGCCCAGCAATTTCGGCCACTGAACGTACGCCAGTGAATCACA
ACAGAGAGGTTCCGATCTCGACCGGAGGACAAAATCATCCGGAGTTCTTC
CGGCCACCGCTGGTCACCAAAGATGATTACAAAAGAGGTTCATTGTTGGC
CACCAACGACCCCATTCAACGCTATCTCAATGTAAAGTACGAATTCGCAC
TGGAGCGCCATGATATCTACAAGCTTAAGGATGAGACCAGAATCCCGCAG
GTCGTTCTGCACTTTCGTTCGGGCAGAACGATTCCTTTGTCAACGGTTGC
TGTCACCGAAGAGGATAAAACTAAAAGCCTGCTGGAAGACGGCGTCAGCA
AGTGCGTGGTTTGTCAAAACTGGACAGACACTTTCTGCAAGCTGTGCAAA
ATGCCCTTCTGCAATGCCTCCTGTTTCGCCGATGTGGCAGAGCAGCATAA
GCAAGCTTGCGGCAAGGGTGAGATACTTAACCTTGACGAAAAGGTGGGCC
GGAAGTACCCCAAACCCGGCTTGCCGCCGTCTGGATCTAAAGTGAGAATT
ACTGCATTCGAGCAGACTAACGTGGTCTATGTGCGCTCGGCGGACATTCA
GATTGACATCGCCTATTATACAGTTCTCACGGAGGTAATGATGCTGGGCA
AAGATGCCTCCAAACTGCAGAGTACGCCAGTCTGCGGACAAATTGTGCTC
TACAAGTTCGAGGGACATATGTCGCGCGCCATGGTGCTAAACGTGGATAA
TATCAAGGAAATCTATGTAGTGTTCATTGATTTCGGAAGTGTTGAAGTCA
CGCAGCTGGAAAGACTGTATGAATGCAGTTCGTATTTAGCTGGTTTGACC
TGCTATCCCGTAGCCGTTAAATTACGCGGAGTTCCCAGGCGCTTTGTGGG
TCCCAACATAAGGGAAGTCATGTACGAACTCGACCAGTCCCTAGTTTTTA
ATATCAAGTACTCGTCACGTGAGTACGATACCAGCAAGGGCATGCAGGTC
GTGGTGATGACCGAGATCGATATTAATAGGAGCCTCAACCGCCTTTTCAA
GACCATCCTAACTCCTGTTGAGCCGTCTGTCTCGGACTTGGGATACAAAG
AGGACTGTCTTCCATACATTCCCTTGCACTGCGGAAAGAACATAAATGTA
GTGGTAATGGACAACACATTCATCCAGTGCGGCTTTATCTACTGCACCTC
CATAGATCTGGCTTACGAAGTCACCAAAATGCAGCGAGACATACAGGAGT
ATGGTGAAAAGATTGCCAAGTGCGCAACCTACGCACCGCCGATAAATGAG
CTTTGCATAGCTAAGTACGAAGGCAAATGGCGTCGAGGTCTCTCTGTGGA
GTTAGTAGGAGATGGTTATCCCAGCATTTTGTTCATTGACTACGGAAACA
TAGTGCCAACACATGTCACCGACATACGTCCCTATCCGCCGCAGTTTATC
TTCCCTATAATGACCACACAGTTGGATTTAATTGGAGTGCCTGAGAAGCC
CACCGATGAGCAGATCAAATGGCTGGATAAAAATTATCCCATTGGGTCCG
TTATCACCTGCAGCGAAATCACTTTCGACGAGGAAACAAATAGCTACTCC
ACTCGCATTGAAAAACTGCAGGAGTTCTTAAGTTTGGACGCAAGCTTTCT
AGACCAT
BO09131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vret-RA | 2076 | CG4771-PA | 1..2073 | 17..2089 | 10365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vret-RA | 2328 | CG4771-RA | 58..2130 | 17..2089 | 10365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22743858..22744674 | 1555..739 | 4085 | 100 | Minus |
| 3R | 32079331 | 3R | 22744738..22745150 | 740..328 | 2065 | 100 | Minus |
| 3R | 32079331 | 3R | 22745214..22745524 | 327..17 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 22743360..22743554 | 1935..1741 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 22743610..22743795 | 1741..1556 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 22743152..22743307 | 2089..1934 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:29 has no hits.
BO09131.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:32 Download gff for
BO09131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-RA | 1..2076 | 17..2093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:33 Download gff for
BO09131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-RA | 40..2129 | 8..2100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:26 Download gff for
BO09131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 49..2121 | 17..2091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:33 Download gff for
BO09131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-RA | 40..2129 | 8..2100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:27 Download gff for
BO09131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 58..2130 | 17..2091 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:27 Download gff for
BO09131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22744740..22745150 | 328..738 | 100 | <- | Minus |
| 3R | 22743150..22743306 | 1935..2091 | 98 | <- | Minus |
| 3R | 22743361..22743554 | 1741..1934 | 100 | <- | Minus |
| 3R | 22743611..22743795 | 1556..1740 | 100 | <- | Minus |
| 3R | 22743858..22744674 | 739..1555 | 100 | <- | Minus |
| 3R | 22745214..22745524 | 17..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:26 Download gff for
BO09131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18568872..18569028 | 1935..2091 | 98 | <- | Minus |
| arm_3R | 18569083..18569276 | 1741..1934 | 100 | <- | Minus |
| arm_3R | 18569333..18569517 | 1556..1740 | 100 | <- | Minus |
| arm_3R | 18569580..18570396 | 739..1555 | 100 | <- | Minus |
| arm_3R | 18570462..18570872 | 328..738 | 100 | <- | Minus |
| arm_3R | 18570936..18571246 | 17..327 | 100 | | Minus |
BO09131.pep Sequence
Translation from 16 to 2107
> BO09131.pep
MESESSQDDWSAFDPMSREYYDQVGNRYTNESGQKLIMEAPLPPKDEKEQ
RATRQAKYPYLVVPKSSPYVTEKMLINFFGRALIKEMEFRRLSRVYFVYF
ENIASLETAQQRVQRYPNLIKCITGRPQKEREITSDPVTSTEPMPTPGPA
ISATERTPVNHNREVPISTGGQNHPEFFRPPLVTKDDYKRGSLLATNDPI
QRYLNVKYEFALERHDIYKLKDETRIPQVVLHFRSGRTIPLSTVAVTEED
KTKSLLEDGVSKCVVCQNWTDTFCKLCKMPFCNASCFADVAEQHKQACGK
GEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQTNVVYVRSADIQIDIAY
YTVLTEVMMLGKDASKLQSTPVCGQIVLYKFEGHMSRAMVLNVDNIKEIY
VVFIDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVPRRFVGPNIRE
VMYELDQSLVFNIKYSSREYDTSKGMQVVVMTEIDINRSLNRLFKTILTP
VEPSVSDLGYKEDCLPYIPLHCGKNINVVVMDNTFIQCGFIYCTSIDLAY
EVTKMQRDIQEYGEKIAKCATYAPPINELCIAKYEGKWRRGLSVELVGDG
YPSILFIDYGNIVPTHVTDIRPYPPQFIFPIMTTQLDLIGVPEKPTDEQI
KWLDKNYPIGSVITCSEITFDEETNSYSTRIEKLQEFLSLDASFLDH
BO09131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vret-PA | 691 | CG4771-PA | 1..691 | 1..691 | 3639 | 100 | Plus |
