Clone Sequence Records
BO09133.3prime Sequence
873 bp (805 high quality bases) assembled on 2006-01-11
> BO09133.3prime
ATGGTCTAGAAAGCTTGCGTTCGTTGGCTGTTCCTGTTGCTGATGTTGCT
GCGCGGAATCGCTGGGTGTTGCTCCTGCCAGCGCAGTTGCTGCTGCAGTG
GCTGCTGCGGCTGTTGCTGCTGCGGCCGCCGCTGCTGCAGCAGCTGCTGT
TGTGCTGGCCGCCGTGGCATCCAGGTTCAGTGTGGTGCTACTGGCGGCCT
TTTGGTTGGGAAAGAGCACCGAGTAGGCCGGCGGCGGATCCAGCTCTTCA
TAGTTGGGCGGCGAGGTGGCTCCCAGGTGGTCCCCGCCACCATTTCCTCC
TCCATTGGCAGCGGCCAGCGCCGCCTCCCGCTCGTTGTTGACCGCATGCT
GCGATGCGGAGGCCCAAAGGCCGCAGATGAGCAGTGCCCCACCGCACAGG
AGCATGCCGAGCATCAGGTAGCCCCACGGGCCGTACTTCGATAGGTCCGA
GTGCAGACCGGAGCGCGTTGAGTTCCTGCGGGTGAAGCCGCTGCCAGCTC
CAGTGCCCACTCCCATTTCAGTCGTATCGTTATCCGGCCTCTGCTGATCC
CCTTCCGTGAGCAGTTTGGGGTCAATTGAGATCGGTGACCCATCGCCACC
GGCTTTCTTCATATCTTTGGTTTGCACTTTGCGCAGCGTGGTCGTCGAGG
TGGCCGTTGAATTGCCCAAACCTTCGCCTCCATCGCTCCCGTTGCGAGGC
AGATCCTCCGGTGCCGTTGGAGCATCGTTGGCGAACAGATTGCGAAACAC
TTCCAGGGCAAACTGCTCGAATAGATCCGACTCCAGGCCGGCGGCCAGCT
TACCGGCTCCCGGGCGACGCTGCTTCGAGCACAGCTCGTAGTCCTCATCG
CTGTCGTACTCGTTGCTGTACGG
BO09133.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-PA | 1734 | CG8180-RA | 877..1731 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 2563 | CG8180-RC | 1294..2148 | 873..19 | 4275 | 100 | Minus |
CG8180-RA | 2273 | CG8180-RA | 1294..2148 | 873..19 | 4275 | 100 | Minus |
CG8180-RB | 2324 | CG8180-RB | 1294..1804 | 873..363 | 2555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15473177..15473687 | 363..873 | 2555 | 100 | Plus |
2R | 25286936 | 2R | 15472590..15472934 | 19..363 | 1725 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2405 | 113..15 | 179 | 69.6 | Minus |
BO09133.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:50 Download gff for
BO09133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 877..1734 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:32 Download gff for
BO09133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 877..1734 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:37:20 Download gff for
BO09133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 1294..2152 | 13..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:05:27 Download gff for
BO09133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 1294..2152 | 13..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:05:27 Download gff for
BO09133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15472586..15472933 | 13..362 | 99 | <- | Plus |
2R | 15473177..15473687 | 363..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:37:20 Download gff for
BO09133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11360091..11360438 | 13..362 | 99 | <- | Plus |
arm_2R | 11360682..11361192 | 363..873 | 100 | | Plus |
BO09133.5prime Sequence
980 bp (871 high quality bases) assembled on 2006-01-10
> BO09133.5prime
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCACCGTC
GCCCGGGAGCCGGTAAGCTGGCCGCCGGGC
BO09133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-PA | 1734 | CG8180-RA | 1..962 | 17..978 | 4785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 2563 | CG8180-RC | 416..1379 | 15..978 | 4805 | 99.9 | Plus |
CG8180-RB | 2324 | CG8180-RB | 416..1379 | 15..978 | 4805 | 99.9 | Plus |
CG8180-RA | 2273 | CG8180-RA | 416..1379 | 15..978 | 4805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15475941..15476354 | 613..200 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 15473885..15474105 | 834..614 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 15482233..15482419 | 201..15 | 935 | 100 | Minus |
2R | 25286936 | 2R | 15473602..15473746 | 978..834 | 710 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:38:14 has no hits.
BO09133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:51 Download gff for
BO09133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 1..963 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:34 Download gff for
BO09133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-PA | 1..963 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:22 Download gff for
BO09133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 412..1380 | 10..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:36 Download gff for
BO09133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 412..1380 | 10..980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:36 Download gff for
BO09133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15473600..15473745 | 835..980 | 98 | <- | Minus |
2R | 15473885..15474105 | 614..834 | 100 | <- | Minus |
2R | 15475941..15476353 | 201..613 | 100 | <- | Minus |
2R | 15482234..15482423 | 10..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:22 Download gff for
BO09133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11361390..11361610 | 614..834 | 100 | <- | Minus |
arm_2R | 11361105..11361250 | 835..980 | 98 | <- | Minus |
arm_2R | 11369739..11369928 | 10..200 | 98 | | Minus |
arm_2R | 11363446..11363858 | 201..613 | 100 | <- | Minus |
BO09133.complete Sequence
1765 bp (1765 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631406
> BO09133.complete
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCAGCGTC
GCCCGGGAGCCGGTAAGCTGGCCGCCGGCCTGGAGTCGGATCTATTCGAG
CAGTTTGCCCTGGAAGTGTTTCGCAATCTGTTCGCCAACGATGCTCCAAC
GGCACCGGAGGATCTGCCTCGCAACGGGAGCGATGGAGGCGAAGGTTTGG
GCAATTCAACGGCCACCTCGACGACCACGCTGCGCAAAGTGCAAACCAAA
GATATGAAGAAAGCCGGTGGCGATGGGTCACCGATCTCAATTGACCCCAA
ACTGCTCACGGAAGGGGATCAGCAGAGGCCGGATAACGATACGACTGAAA
TGGGAGTGGGCACTGGAGCTGGCAGCGGCTTCACCCGCAGGAACTCAACG
CGCTCCGGTCTGCACTCGGACCTATCGAAGTACGGCCCGTGGGGCTACCT
GATGCTCGGCATGCTCCTGTGCGGTGGGGCACTGCTCATCTGCGGCCTTT
GGGCCTCCGCATCGCAGCATGCGGTCAACAACGAGCGGGAGGCGGCGCTG
GCCGCTGCCAATGGAGGAGGAAATGGTGGCGGGGACCACCTGGGAGCCAC
CTCGCCGCCCAACTATGAAGAGCTGGATCCGCCGCCGGCCTACTCGGTGC
TCTTTCCCAACCAAAAGGCCGCCAGTAGCACCACACTGAACCTGGATGCC
ACGGCGGCCAGCACAACAGCAGCTGCTGCAGCAGCGGCGGCCGCAGCAGC
AACAGCCGCAGCAGCCACTGCAGCAGCAACTGCGCTGGCAGGAGCAACAC
CCAGCGATTCCGCGCAGCAACATCAGCAACAGGAACAGCCAACGAACGCA
AGCTTTCTAGACCAT
BO09133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 1734 | CG8180-PC | 1..1731 | 17..1747 | 8655 | 100 | Plus |
CG8180-RA | 1734 | CG8180-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
CG8180-RB | 1785 | CG8180-PB | 1..1387 | 17..1403 | 6935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-RC | 2563 | CG8180-RC | 416..2148 | 15..1747 | 8665 | 100 | Plus |
CG8180-RA | 2273 | CG8180-RA | 416..2148 | 15..1747 | 8665 | 100 | Plus |
CG8180-RB | 2324 | CG8180-RB | 416..1804 | 15..1403 | 6945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15473177..15473746 | 1403..834 | 2850 | 100 | Minus |
2R | 25286936 | 2R | 15475941..15476354 | 613..200 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 15472590..15472934 | 1747..1403 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 15473885..15474105 | 834..614 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 15482233..15482419 | 201..15 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 12:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2405 | 1653..1751 | 179 | 69.6 | Plus |
BO09133.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:34 Download gff for
BO09133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 1..1734 | 17..1748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:35 Download gff for
BO09133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 411..2151 | 10..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:28 Download gff for
BO09133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 418..2148 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:34 Download gff for
BO09133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 411..2151 | 10..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:08 Download gff for
BO09133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8180-RA | 418..2148 | 17..1749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:08 Download gff for
BO09133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15482234..15482417 | 17..200 | 100 | | Minus |
2R | 15472586..15472933 | 1404..1749 | 99 | <- | Minus |
2R | 15473177..15473745 | 835..1403 | 100 | <- | Minus |
2R | 15473885..15474105 | 614..834 | 100 | <- | Minus |
2R | 15475941..15476353 | 201..613 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:28 Download gff for
BO09133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11360091..11360438 | 1404..1749 | 99 | <- | Minus |
arm_2R | 11360682..11361250 | 835..1403 | 100 | <- | Minus |
arm_2R | 11361390..11361610 | 614..834 | 100 | <- | Minus |
arm_2R | 11363446..11363858 | 201..613 | 100 | <- | Minus |
arm_2R | 11369739..11369922 | 17..200 | 100 | | Minus |
BO09133.pep Sequence
Translation from 16 to 1765
> BO09133.pep
MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA
SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY
GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA
AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF
SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL
MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS
DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL
PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG
DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML
LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY
EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA
TAAATALAGATPSDSAQQHQQQEQPTNASFLDH
BO09133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8180-PC | 577 | CG8180-PC | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PA | 577 | CG8180-PA | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PB | 594 | CG8180-PB | 1..594 | 1..577 | 2985 | 97.1 | Plus |