Clone BO09133 Report

Search the DGRC for BO09133

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG8180-RA
Protein status:BO09133.pep: validated full length
Sequenced Size:1765

Clone Sequence Records

BO09133.3prime Sequence

873 bp (805 high quality bases) assembled on 2006-01-11

> BO09133.3prime
ATGGTCTAGAAAGCTTGCGTTCGTTGGCTGTTCCTGTTGCTGATGTTGCT
GCGCGGAATCGCTGGGTGTTGCTCCTGCCAGCGCAGTTGCTGCTGCAGTG
GCTGCTGCGGCTGTTGCTGCTGCGGCCGCCGCTGCTGCAGCAGCTGCTGT
TGTGCTGGCCGCCGTGGCATCCAGGTTCAGTGTGGTGCTACTGGCGGCCT
TTTGGTTGGGAAAGAGCACCGAGTAGGCCGGCGGCGGATCCAGCTCTTCA
TAGTTGGGCGGCGAGGTGGCTCCCAGGTGGTCCCCGCCACCATTTCCTCC
TCCATTGGCAGCGGCCAGCGCCGCCTCCCGCTCGTTGTTGACCGCATGCT
GCGATGCGGAGGCCCAAAGGCCGCAGATGAGCAGTGCCCCACCGCACAGG
AGCATGCCGAGCATCAGGTAGCCCCACGGGCCGTACTTCGATAGGTCCGA
GTGCAGACCGGAGCGCGTTGAGTTCCTGCGGGTGAAGCCGCTGCCAGCTC
CAGTGCCCACTCCCATTTCAGTCGTATCGTTATCCGGCCTCTGCTGATCC
CCTTCCGTGAGCAGTTTGGGGTCAATTGAGATCGGTGACCCATCGCCACC
GGCTTTCTTCATATCTTTGGTTTGCACTTTGCGCAGCGTGGTCGTCGAGG
TGGCCGTTGAATTGCCCAAACCTTCGCCTCCATCGCTCCCGTTGCGAGGC
AGATCCTCCGGTGCCGTTGGAGCATCGTTGGCGAACAGATTGCGAAACAC
TTCCAGGGCAAACTGCTCGAATAGATCCGACTCCAGGCCGGCGGCCAGCT
TACCGGCTCCCGGGCGACGCTGCTTCGAGCACAGCTCGTAGTCCTCATCG
CTGTCGTACTCGTTGCTGTACGG

BO09133.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PA 1734 CG8180-RA 877..1731 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 2563 CG8180-RC 1294..2148 873..19 4275 100 Minus
CG8180-RA 2273 CG8180-RA 1294..2148 873..19 4275 100 Minus
CG8180-RB 2324 CG8180-RB 1294..1804 873..363 2555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15473177..15473687 363..873 2555 100 Plus
2R 25286936 2R 15472590..15472934 19..363 1725 100 Plus
Blast to na_te.dros performed 2015-02-11 18:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2405 113..15 179 69.6 Minus

BO09133.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:50 Download gff for BO09133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 877..1734 18..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:32 Download gff for BO09133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 877..1734 18..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:37:20 Download gff for BO09133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1294..2152 13..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:05:27 Download gff for BO09133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1294..2152 13..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:05:27 Download gff for BO09133.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15472586..15472933 13..362 99 <- Plus
2R 15473177..15473687 363..873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:37:20 Download gff for BO09133.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11360091..11360438 13..362 99 <- Plus
arm_2R 11360682..11361192 363..873 100   Plus

BO09133.5prime Sequence

980 bp (871 high quality bases) assembled on 2006-01-10

> BO09133.5prime
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCACCGTC
GCCCGGGAGCCGGTAAGCTGGCCGCCGGGC

BO09133.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PA 1734 CG8180-RA 1..962 17..978 4785 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 2563 CG8180-RC 416..1379 15..978 4805 99.9 Plus
CG8180-RB 2324 CG8180-RB 416..1379 15..978 4805 99.9 Plus
CG8180-RA 2273 CG8180-RA 416..1379 15..978 4805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15475941..15476354 613..200 2070 100 Minus
2R 25286936 2R 15473885..15474105 834..614 1105 100 Minus
2R 25286936 2R 15482233..15482419 201..15 935 100 Minus
2R 25286936 2R 15473602..15473746 978..834 710 99.3 Minus
Blast to na_te.dros performed on 2015-02-02 09:38:14 has no hits.

BO09133.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:51 Download gff for BO09133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 1..963 17..980 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:34 Download gff for BO09133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-PA 1..963 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:22 Download gff for BO09133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 412..1380 10..980 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:36 Download gff for BO09133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 412..1380 10..980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:36 Download gff for BO09133.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15473600..15473745 835..980 98 <- Minus
2R 15473885..15474105 614..834 100 <- Minus
2R 15475941..15476353 201..613 100 <- Minus
2R 15482234..15482423 10..200 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:22 Download gff for BO09133.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11361390..11361610 614..834 100 <- Minus
arm_2R 11361105..11361250 835..980 98 <- Minus
arm_2R 11369739..11369928 10..200 98   Minus
arm_2R 11363446..11363858 201..613 100 <- Minus

BO09133.complete Sequence

1765 bp (1765 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631406

> BO09133.complete
GAAGTTATCAGTCGACATGGCGACCGCCGCCTGCGTCCGCTGCGCCCAAC
AACAACAACAGAAGCAACAACAACATGCGGCGCATGCGCAGCAGCAGCAG
CGACGCAACAGCCCGCGGATTCTGCACATTTACTGCGCGTGGGCGTTGAT
CACTCTGTTGGCCGCCAGTGCCGCCATGGTCCAAAGTGCAGCGGTATTCG
GCGATCTGCTGTCCCATCCCACTTTCAAGCCACTATGCAGCGCTCAGCAC
GAGCATTTCATCGAGAGCGATGGCAAAGAATCTAGTCTCATCATCGAACT
GAAGCCGGGACTCTATGGGGCGGAGCACGCCTCCTGTTCCCGCATCCTGA
GTGCCCCGCCCAACTATGGATTCATAGTGCGCCTCATCCTGCCAAAGCTG
CCGCACGGTCAGCCGTTGGATGCGGCCACCACCAGAAGTCCCCCCACGAA
CATCATGGCTGCCGCAGCCGGAGGCAACAACTCGTCCAAACTCCGGCGCA
CTGGCAAGTCCGGCGAAATGACAACTGACTCCTCGGAGCCACTCAACACG
ACGAGGGCCATCGTCTCATCGGCGCCTACGCGGTTGTTGGGACGCACCTG
CCCTCTGAACATATTTAGCTCGCTCGATCCGCACACGGCACAGTGGCGAG
TGGATCCCTGCCAGCTGGAGGACACTGCCTCCGAGATGGAGGATCCGGTG
CGGCTCTTTCATGGCCGCGTCAAGATCGTCTGGGAACATGGCCAGCACGC
CCTCCGATCCAAACTGATGGTCACGGTGCTGGGCAAGGGCGAGCAGTGCA
AGGATGGCAGCAAGCACCAGTGCTTGAAGATCGGTGATGAGCCCATTCTG
TGCATCTCCAAGGAGCTGTCTTGCGACGGGATCCGCCATTGTCCGTACAG
CAACGAGTACGACAGCGATGAGGACTACGAGCTGTGCTCGAAGCAGCGTC
GCCCGGGAGCCGGTAAGCTGGCCGCCGGCCTGGAGTCGGATCTATTCGAG
CAGTTTGCCCTGGAAGTGTTTCGCAATCTGTTCGCCAACGATGCTCCAAC
GGCACCGGAGGATCTGCCTCGCAACGGGAGCGATGGAGGCGAAGGTTTGG
GCAATTCAACGGCCACCTCGACGACCACGCTGCGCAAAGTGCAAACCAAA
GATATGAAGAAAGCCGGTGGCGATGGGTCACCGATCTCAATTGACCCCAA
ACTGCTCACGGAAGGGGATCAGCAGAGGCCGGATAACGATACGACTGAAA
TGGGAGTGGGCACTGGAGCTGGCAGCGGCTTCACCCGCAGGAACTCAACG
CGCTCCGGTCTGCACTCGGACCTATCGAAGTACGGCCCGTGGGGCTACCT
GATGCTCGGCATGCTCCTGTGCGGTGGGGCACTGCTCATCTGCGGCCTTT
GGGCCTCCGCATCGCAGCATGCGGTCAACAACGAGCGGGAGGCGGCGCTG
GCCGCTGCCAATGGAGGAGGAAATGGTGGCGGGGACCACCTGGGAGCCAC
CTCGCCGCCCAACTATGAAGAGCTGGATCCGCCGCCGGCCTACTCGGTGC
TCTTTCCCAACCAAAAGGCCGCCAGTAGCACCACACTGAACCTGGATGCC
ACGGCGGCCAGCACAACAGCAGCTGCTGCAGCAGCGGCGGCCGCAGCAGC
AACAGCCGCAGCAGCCACTGCAGCAGCAACTGCGCTGGCAGGAGCAACAC
CCAGCGATTCCGCGCAGCAACATCAGCAACAGGAACAGCCAACGAACGCA
AGCTTTCTAGACCAT

BO09133.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 1734 CG8180-PC 1..1731 17..1747 8655 100 Plus
CG8180-RA 1734 CG8180-PA 1..1731 17..1747 8655 100 Plus
CG8180-RB 1785 CG8180-PB 1..1387 17..1403 6935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RC 2563 CG8180-RC 416..2148 15..1747 8665 100 Plus
CG8180-RA 2273 CG8180-RA 416..2148 15..1747 8665 100 Plus
CG8180-RB 2324 CG8180-RB 416..1804 15..1403 6945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15473177..15473746 1403..834 2850 100 Minus
2R 25286936 2R 15475941..15476354 613..200 2070 100 Minus
2R 25286936 2R 15472590..15472934 1747..1403 1725 100 Minus
2R 25286936 2R 15473885..15474105 834..614 1105 100 Minus
2R 25286936 2R 15482233..15482419 201..15 935 100 Minus
Blast to na_te.dros performed 2014-11-27 12:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2405 1653..1751 179 69.6 Plus

BO09133.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:34 Download gff for BO09133.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1..1734 17..1748 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:35 Download gff for BO09133.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 411..2151 10..1753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:28 Download gff for BO09133.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 418..2148 17..1749 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:34 Download gff for BO09133.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 411..2151 10..1753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:08 Download gff for BO09133.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 418..2148 17..1749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:08 Download gff for BO09133.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15482234..15482417 17..200 100   Minus
2R 15472586..15472933 1404..1749 99 <- Minus
2R 15473177..15473745 835..1403 100 <- Minus
2R 15473885..15474105 614..834 100 <- Minus
2R 15475941..15476353 201..613 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:28 Download gff for BO09133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11360091..11360438 1404..1749 99 <- Minus
arm_2R 11360682..11361250 835..1403 100 <- Minus
arm_2R 11361390..11361610 614..834 100 <- Minus
arm_2R 11363446..11363858 201..613 100 <- Minus
arm_2R 11369739..11369922 17..200 100   Minus

BO09133.pep Sequence

Translation from 16 to 1765

> BO09133.pep
MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA
SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY
GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA
AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF
SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL
MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS
DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL
PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG
DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML
LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY
EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA
TAAATALAGATPSDSAQQHQQQEQPTNASFLDH

BO09133.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PC 577 CG8180-PC 1..577 1..577 3013 100 Plus
CG8180-PA 577 CG8180-PA 1..577 1..577 3013 100 Plus
CG8180-PB 594 CG8180-PB 1..594 1..577 2985 97.1 Plus