Clone BO09137 Report

Search the DGRC for BO09137

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptAtg18-RA
Protein status:BO09137.pep: Imported from assembly
Sequenced Size:1165

Clone Sequence Records

BO09137.3prime Sequence

955 bp (863 high quality bases) assembled on 2006-01-11

> BO09137.3prime
ATGGTCTAGAAAGCTTGCAGCACCTTTGATATCCATGGCATAGTGGTCCT
CCAGCCGCAGGTCGTGCCTCTTTATTAGCTGGCACTCTGCGCCCTCGACG
GTGGGAATGGAATACACGTACAAGTACCCATCCTGCGAGGCAATCAAAAG
TCTTAGCTGCTTTTGTATCGTGGCAATAGCGCACATCCTGCGCACTCCCG
CCTCCGGCAGAGTGACCGAGGCGAAGGCACGGCCTTGGCTAAACACGTCG
GTCACCTGCGTGGGCAGGTAGCTGGTGACCGTTTTGCTTAAGAATCTAAA
AAACGAGTAACCCATCCAGTCGTCGCTCGACTGCTTGCTGCCATGGCCTT
CGGCTGTTTCCGTGGCACTGCGATCCAGCCGGAAGATGTGAACCGTCTCG
GTGTTGGAGCTGGACACCAGATATTCGGCGCACGTGCTAAACGACAGCGA
AACGATGGACACACAGCGCTTTAGTCCCCGTCGCAGTTCAAAGAGTCGAC
TGCCATCCTGGGAGCTGAAGACTCGGATCACCGTGCCACGCTCACTGGCC
GTGGCTATCTCCGTGCCCGAGGGACTAAAGGCCAATGCCGCCAGAGGTGT
GTCGTGGGCGGGAATCATGGTCTTGGCGTGCAAGTTGATGGCATCAAAGA
TCTGTACCTCGCCAGCAGTCACGCTGCCTGGGTAGGCCAGATAGCAGTGC
TCCGACGACGAGGAGAGGGCACAAAGACCCTGCGGATTGCACGGTGTGTC
GCGTATGGTGTGCACCACCTTCATGTCCTGGATATTGTGGATATACAATG
ACTCCTCCAGGCACACAATCAATCGCTCGCGATTGAGCTTCACGGCCAGT
ATTGTGTTTGCATACGAGTAGTTGCAGATCTCGCTCTGCTTCTTAAGTGG
CACACCTTGAGCTTGCGTGGTGCTCGCTGGGAAACTATTGCCACCAAGGA
GCTCT

BO09137.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7986-PA 1134 Atg18-RA 254..1131 896..19 4390 100 Minus
CG7986-PB 1134 Atg18-RB 254..1131 896..19 4390 100 Minus
CG7986-PC 1134 Atg18-RC 254..1131 896..19 4390 100 Minus
CG7986-PA 1134 Atg18-RA 194..254 955..895 305 100 Minus
CG7986-PB 1134 Atg18-RB 194..254 955..895 305 100 Minus
CG7986-PC 1134 Atg18-RC 194..254 955..895 305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RG 2235 CG7986-RG 558..1495 955..19 4665 99.9 Minus
Atg18a-RC 2526 CG7986-RC 445..1382 955..19 4665 99.9 Minus
Atg18a-RB 2382 CG7986-RB 705..1642 955..19 4665 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8187935..8188580 955..311 3180 99.8 Minus
3L 28110227 3L 8189286..8189445 311..152 800 100 Minus
3L 28110227 3L 8189840..8189974 153..19 675 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:41:41 has no hits.

BO09137.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:55 Download gff for BO09137.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-PB 194..1134 15..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:40 Download gff for BO09137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7986-PC 194..1134 15..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:37:40 Download gff for BO09137.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 420..1366 9..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:40 Download gff for BO09137.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RB 705..1651 9..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:40 Download gff for BO09137.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8189842..8189983 9..151 97   Minus
3L 8187935..8188580 311..955 99 -> Minus
3L 8189287..8189445 152..310 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:40 Download gff for BO09137.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8182387..8182545 152..310 100 -> Minus
arm_3L 8182942..8183083 9..151 97   Minus
arm_3L 8181035..8181680 311..955 99 -> Minus

BO09137.5prime Sequence

905 bp (803 high quality bases) assembled on 2006-01-10

> BO09137.5prime
GAAGTTATCAGTCGACATGATGAGCCTGCTGGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAAGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTCGTTTTTTAGATCTTTAGCAAAACGGTCACCAGCTACCTG
CCCAC

BO09137.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7986-PA 1134 Atg18-RA 1..856 17..872 4230 99.7 Plus
CG7986-PB 1134 Atg18-RB 1..856 17..872 4230 99.7 Plus
CG7986-PC 1134 Atg18-RC 1..856 17..872 4230 99.7 Plus
CG7986-PA 1134 Atg18-RA 862..890 877..905 145 100 Plus
CG7986-PB 1134 Atg18-RB 862..890 877..905 145 100 Plus
CG7986-PC 1134 Atg18-RC 862..890 877..905 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RE 2267 CG7986-RE 226..1116 16..905 4385 99.6 Plus
Atg18a-RG 2235 CG7986-RG 364..1254 16..905 4385 99.6 Plus
Atg18a-RC 2526 CG7986-RC 251..1141 16..905 4385 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8187813..8188580 88..855 3825 99.9 Plus
3L 28110227 3L 8187505..8187576 16..87 345 98.6 Plus
3L 28110227 3L 8189286..8189337 855..905 195 96.2 Plus
Blast to na_te.dros performed on 2015-02-12 11:46:57 has no hits.

BO09137.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:56 Download gff for BO09137.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-PB 1..890 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:41 Download gff for BO09137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7986-PC 1..890 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:02 Download gff for BO09137.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18-RB 504..1401 9..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:31 Download gff for BO09137.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RC 244..1141 9..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:31 Download gff for BO09137.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8187498..8187576 9..87 93 -> Plus
3L 8187813..8188580 88..855 99 -> Plus
3L 8189287..8189337 856..905 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:02 Download gff for BO09137.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8180598..8180676 9..87 93 -> Plus
arm_3L 8180913..8181680 88..855 99 -> Plus
arm_3L 8182387..8182437 856..905 96   Plus

BO09137.complete Sequence

1165 bp assembled on 2008-08-15

GenBank Submission: FJ631407

> BO09137.complete
GAAGTTATCAGTCGACATGATGAGCCTGCTGGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAGGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTCGTTTTTTAGATTCTTAAGCAAAACGGTCACCAGCTACCT
GCCCACGCAGGTGACCGACGTGTTTAGCCAAGGCCGTGCCTTCGCCTCGG
TCACTCTGCCGGAGGCGGGAGTGCGCAGGATGTGCGCTATTGCCACGATA
CAAAAGCAGCTAAGACTTTTGATTGCCTCGCAGGATGGGTACTTGTACGT
GTATTCCATTCCCACCGTCGAGGGCGCAGAGTGCCAGCTAATAAAGAGGC
ACGACCTGCGGCTGGAGGACCACTATGCCATGGATATCAAAGGTGCTGCA
AGCTTTCTAGACCAT

BO09137.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RG 1134 CG7986-PG 1..1131 17..1147 5640 99.9 Plus
Atg18a-RC 1134 CG7986-PC 1..1131 17..1147 5640 99.9 Plus
Atg18a-RB 1134 CG7986-PB 1..1131 17..1147 5640 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-RG 2235 CG7986-RG 364..1495 16..1147 5645 99.9 Plus
Atg18a-RC 2526 CG7986-RC 251..1382 16..1147 5645 99.9 Plus
Atg18a-RB 2382 CG7986-RB 511..1642 16..1147 5645 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8187813..8188580 88..855 3840 100 Plus
3L 28110227 3L 8189286..8189445 855..1014 800 100 Plus
3L 28110227 3L 8189840..8189974 1013..1147 675 100 Plus
3L 28110227 3L 8187505..8187576 16..87 345 98.6 Plus
Blast to na_te.dros performed on 2014-11-27 21:02:14 has no hits.

BO09137.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:51 Download gff for BO09137.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 238..1385 9..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:18 Download gff for BO09137.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 227..1357 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:12 Download gff for BO09137.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 246..1376 17..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:22 Download gff for BO09137.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RB 512..1642 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:22 Download gff for BO09137.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8187506..8187576 17..87 98 -> Plus
3L 8187813..8188580 88..855 100 -> Plus
3L 8189287..8189445 856..1014 100 -> Plus
3L 8189842..8189974 1015..1149 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:18 Download gff for BO09137.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8182942..8183074 1015..1149 98   Plus
arm_3L 8180606..8180676 17..87 98 -> Plus
arm_3L 8180913..8181680 88..855 100 -> Plus
arm_3L 8182387..8182545 856..1014 100 -> Plus

BO09137.pep Sequence

Translation from 16 to 1165

> BO09137.pep
MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY
HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI
LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE
HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT
ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT
ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT
DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT
VEGAECQLIKRHDLRLEDHYAMDIKGAASFLDH

BO09137.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-PG 377 CG7986-PG 1..377 1..377 1917 100 Plus
Atg18a-PC 377 CG7986-PC 1..377 1..377 1917 100 Plus
Atg18a-PB 377 CG7986-PB 1..377 1..377 1917 100 Plus
Atg18a-PA 377 CG7986-PA 1..377 1..377 1917 100 Plus
Atg18a-PE 447 CG7986-PE 1..375 1..375 1907 100 Plus