Clone Sequence Records
BO09137.3prime Sequence
955 bp (863 high quality bases) assembled on 2006-01-11
> BO09137.3prime
ATGGTCTAGAAAGCTTGCAGCACCTTTGATATCCATGGCATAGTGGTCCT
CCAGCCGCAGGTCGTGCCTCTTTATTAGCTGGCACTCTGCGCCCTCGACG
GTGGGAATGGAATACACGTACAAGTACCCATCCTGCGAGGCAATCAAAAG
TCTTAGCTGCTTTTGTATCGTGGCAATAGCGCACATCCTGCGCACTCCCG
CCTCCGGCAGAGTGACCGAGGCGAAGGCACGGCCTTGGCTAAACACGTCG
GTCACCTGCGTGGGCAGGTAGCTGGTGACCGTTTTGCTTAAGAATCTAAA
AAACGAGTAACCCATCCAGTCGTCGCTCGACTGCTTGCTGCCATGGCCTT
CGGCTGTTTCCGTGGCACTGCGATCCAGCCGGAAGATGTGAACCGTCTCG
GTGTTGGAGCTGGACACCAGATATTCGGCGCACGTGCTAAACGACAGCGA
AACGATGGACACACAGCGCTTTAGTCCCCGTCGCAGTTCAAAGAGTCGAC
TGCCATCCTGGGAGCTGAAGACTCGGATCACCGTGCCACGCTCACTGGCC
GTGGCTATCTCCGTGCCCGAGGGACTAAAGGCCAATGCCGCCAGAGGTGT
GTCGTGGGCGGGAATCATGGTCTTGGCGTGCAAGTTGATGGCATCAAAGA
TCTGTACCTCGCCAGCAGTCACGCTGCCTGGGTAGGCCAGATAGCAGTGC
TCCGACGACGAGGAGAGGGCACAAAGACCCTGCGGATTGCACGGTGTGTC
GCGTATGGTGTGCACCACCTTCATGTCCTGGATATTGTGGATATACAATG
ACTCCTCCAGGCACACAATCAATCGCTCGCGATTGAGCTTCACGGCCAGT
ATTGTGTTTGCATACGAGTAGTTGCAGATCTCGCTCTGCTTCTTAAGTGG
CACACCTTGAGCTTGCGTGGTGCTCGCTGGGAAACTATTGCCACCAAGGA
GCTCT
BO09137.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7986-PA | 1134 | Atg18-RA | 254..1131 | 896..19 | 4390 | 100 | Minus |
CG7986-PB | 1134 | Atg18-RB | 254..1131 | 896..19 | 4390 | 100 | Minus |
CG7986-PC | 1134 | Atg18-RC | 254..1131 | 896..19 | 4390 | 100 | Minus |
CG7986-PA | 1134 | Atg18-RA | 194..254 | 955..895 | 305 | 100 | Minus |
CG7986-PB | 1134 | Atg18-RB | 194..254 | 955..895 | 305 | 100 | Minus |
CG7986-PC | 1134 | Atg18-RC | 194..254 | 955..895 | 305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RG | 2235 | CG7986-RG | 558..1495 | 955..19 | 4665 | 99.9 | Minus |
Atg18a-RC | 2526 | CG7986-RC | 445..1382 | 955..19 | 4665 | 99.9 | Minus |
Atg18a-RB | 2382 | CG7986-RB | 705..1642 | 955..19 | 4665 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8187935..8188580 | 955..311 | 3180 | 99.8 | Minus |
3L | 28110227 | 3L | 8189286..8189445 | 311..152 | 800 | 100 | Minus |
3L | 28110227 | 3L | 8189840..8189974 | 153..19 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:41:41 has no hits.
BO09137.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:55 Download gff for
BO09137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-PB | 194..1134 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:40 Download gff for
BO09137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7986-PC | 194..1134 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:37:40 Download gff for
BO09137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RA | 420..1366 | 9..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:40 Download gff for
BO09137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18a-RB | 705..1651 | 9..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:40 Download gff for
BO09137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8189842..8189983 | 9..151 | 97 | | Minus |
3L | 8187935..8188580 | 311..955 | 99 | -> | Minus |
3L | 8189287..8189445 | 152..310 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:40 Download gff for
BO09137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8182387..8182545 | 152..310 | 100 | -> | Minus |
arm_3L | 8182942..8183083 | 9..151 | 97 | | Minus |
arm_3L | 8181035..8181680 | 311..955 | 99 | -> | Minus |
BO09137.5prime Sequence
905 bp (803 high quality bases) assembled on 2006-01-10
> BO09137.5prime
GAAGTTATCAGTCGACATGATGAGCCTGCTGGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAAGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTCGTTTTTTAGATCTTTAGCAAAACGGTCACCAGCTACCTG
CCCAC
BO09137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7986-PA | 1134 | Atg18-RA | 1..856 | 17..872 | 4230 | 99.7 | Plus |
CG7986-PB | 1134 | Atg18-RB | 1..856 | 17..872 | 4230 | 99.7 | Plus |
CG7986-PC | 1134 | Atg18-RC | 1..856 | 17..872 | 4230 | 99.7 | Plus |
CG7986-PA | 1134 | Atg18-RA | 862..890 | 877..905 | 145 | 100 | Plus |
CG7986-PB | 1134 | Atg18-RB | 862..890 | 877..905 | 145 | 100 | Plus |
CG7986-PC | 1134 | Atg18-RC | 862..890 | 877..905 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RE | 2267 | CG7986-RE | 226..1116 | 16..905 | 4385 | 99.6 | Plus |
Atg18a-RG | 2235 | CG7986-RG | 364..1254 | 16..905 | 4385 | 99.6 | Plus |
Atg18a-RC | 2526 | CG7986-RC | 251..1141 | 16..905 | 4385 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8187813..8188580 | 88..855 | 3825 | 99.9 | Plus |
3L | 28110227 | 3L | 8187505..8187576 | 16..87 | 345 | 98.6 | Plus |
3L | 28110227 | 3L | 8189286..8189337 | 855..905 | 195 | 96.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:46:57 has no hits.
BO09137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:56 Download gff for
BO09137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-PB | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:41 Download gff for
BO09137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7986-PC | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:28:02 Download gff for
BO09137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RB | 504..1401 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:31 Download gff for
BO09137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18a-RC | 244..1141 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:31 Download gff for
BO09137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8187498..8187576 | 9..87 | 93 | -> | Plus |
3L | 8187813..8188580 | 88..855 | 99 | -> | Plus |
3L | 8189287..8189337 | 856..905 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:28:02 Download gff for
BO09137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8180598..8180676 | 9..87 | 93 | -> | Plus |
arm_3L | 8180913..8181680 | 88..855 | 99 | -> | Plus |
arm_3L | 8182387..8182437 | 856..905 | 96 | | Plus |
BO09137.complete Sequence
1165 bp assembled on 2008-08-15
GenBank Submission: FJ631407
> BO09137.complete
GAAGTTATCAGTCGACATGATGAGCCTGCTGGGGCGCACCGATGTGGATG
CGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGCCGTG
GCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACTCGAC
CCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATCGAGC
GTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACCACGC
AAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACTACTC
GTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTGATTG
TGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAAGGTG
GTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTGCCCT
CTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTGACTG
CTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGACCATG
ATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCTCGGG
CACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTCTTCA
GCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAAGCGC
TGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATCTGGT
GTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGCAGTG
CCACGGAAACAGCCGAAGGCCATGGCAGCAAGCAGTCGAGCGACGACTGG
ATGGGTTACTCGTTTTTTAGATTCTTAAGCAAAACGGTCACCAGCTACCT
GCCCACGCAGGTGACCGACGTGTTTAGCCAAGGCCGTGCCTTCGCCTCGG
TCACTCTGCCGGAGGCGGGAGTGCGCAGGATGTGCGCTATTGCCACGATA
CAAAAGCAGCTAAGACTTTTGATTGCCTCGCAGGATGGGTACTTGTACGT
GTATTCCATTCCCACCGTCGAGGGCGCAGAGTGCCAGCTAATAAAGAGGC
ACGACCTGCGGCTGGAGGACCACTATGCCATGGATATCAAAGGTGCTGCA
AGCTTTCTAGACCAT
BO09137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RG | 1134 | CG7986-PG | 1..1131 | 17..1147 | 5640 | 99.9 | Plus |
Atg18a-RC | 1134 | CG7986-PC | 1..1131 | 17..1147 | 5640 | 99.9 | Plus |
Atg18a-RB | 1134 | CG7986-PB | 1..1131 | 17..1147 | 5640 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-RG | 2235 | CG7986-RG | 364..1495 | 16..1147 | 5645 | 99.9 | Plus |
Atg18a-RC | 2526 | CG7986-RC | 251..1382 | 16..1147 | 5645 | 99.9 | Plus |
Atg18a-RB | 2382 | CG7986-RB | 511..1642 | 16..1147 | 5645 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8187813..8188580 | 88..855 | 3840 | 100 | Plus |
3L | 28110227 | 3L | 8189286..8189445 | 855..1014 | 800 | 100 | Plus |
3L | 28110227 | 3L | 8189840..8189974 | 1013..1147 | 675 | 100 | Plus |
3L | 28110227 | 3L | 8187505..8187576 | 16..87 | 345 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:02:14 has no hits.
BO09137.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:51 Download gff for
BO09137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RC | 238..1385 | 9..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:18 Download gff for
BO09137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RA | 227..1357 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:12 Download gff for
BO09137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18-RC | 246..1376 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:22 Download gff for
BO09137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18a-RB | 512..1642 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:22 Download gff for
BO09137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8187506..8187576 | 17..87 | 98 | -> | Plus |
3L | 8187813..8188580 | 88..855 | 100 | -> | Plus |
3L | 8189287..8189445 | 856..1014 | 100 | -> | Plus |
3L | 8189842..8189974 | 1015..1149 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:18 Download gff for
BO09137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8182942..8183074 | 1015..1149 | 98 | | Plus |
arm_3L | 8180606..8180676 | 17..87 | 98 | -> | Plus |
arm_3L | 8180913..8181680 | 88..855 | 100 | -> | Plus |
arm_3L | 8182387..8182545 | 856..1014 | 100 | -> | Plus |
BO09137.pep Sequence
Translation from 16 to 1165
> BO09137.pep
MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY
HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI
LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE
HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT
ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT
ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT
DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT
VEGAECQLIKRHDLRLEDHYAMDIKGAASFLDH
BO09137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18a-PG | 377 | CG7986-PG | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PC | 377 | CG7986-PC | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PB | 377 | CG7986-PB | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PA | 377 | CG7986-PA | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PE | 447 | CG7986-PE | 1..375 | 1..375 | 1907 | 100 | Plus |